Wall clock time and date at job start Wed Apr 1 2020 02:47:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 103.00261 * 2 1 4 4 H 1.08995 * 110.87421 * 57.39004 * 3 2 1 5 5 C 1.55141 * 110.99010 * 293.54222 * 3 2 1 6 6 C 1.54312 * 103.01946 * 206.25253 * 5 3 2 7 7 N 1.47447 * 107.23358 * 22.28640 * 6 5 3 8 8 C 1.46898 * 110.99793 * 123.25520 * 7 6 5 9 9 C 1.50704 * 109.47344 * 69.87688 * 8 7 6 10 10 N 1.29822 * 118.34516 * 359.97438 * 9 8 7 11 11 C 1.35635 * 121.62605 * 179.97438 * 10 9 8 12 12 C 1.39635 * 121.62915 * 179.97438 * 11 10 9 13 13 C 1.37706 * 119.69884 * 180.02562 * 12 11 10 14 14 C 1.38877 * 120.82480 * 0.02562 * 13 12 11 15 15 C 1.37792 * 120.57028 * 359.97438 * 14 13 12 16 16 C 1.39376 * 119.51947 * 0.02562 * 15 14 13 17 17 C 1.46964 * 121.90567 * 179.71830 * 16 15 14 18 18 O 1.21720 * 121.28839 * 0.27592 * 17 16 15 19 19 N 1.35342 * 117.42483 * 179.78086 * 17 16 15 20 20 C 1.37094 * 119.72029 * 180.23356 * 19 17 16 21 21 H 1.08005 * 120.00251 * 220.97900 * 20 19 17 22 22 C 1.39077 * 120.00013 * 40.97510 * 20 19 17 23 23 N 1.31259 * 120.00045 * 204.25429 * 22 20 19 24 24 Si 1.86803 * 119.99876 * 24.25711 * 22 20 19 25 25 H 1.48499 * 109.46867 * 96.56804 * 24 22 20 26 26 H 1.48497 * 109.47202 * 216.57073 * 24 22 20 27 27 H 1.48501 * 109.46877 * 336.57291 * 24 22 20 28 28 C 1.47847 * 108.56716 * 0.98679 * 7 6 5 29 29 H 1.08995 * 109.47156 * 300.00385 * 1 2 3 30 30 H 1.09009 * 109.46680 * 60.00114 * 1 2 3 31 31 H 1.08997 * 109.47330 * 179.97438 * 1 2 3 32 32 H 1.08998 * 110.70282 * 87.87041 * 5 3 2 33 33 H 1.09000 * 110.85358 * 324.71059 * 5 3 2 34 34 H 1.08999 * 109.89460 * 262.87752 * 6 5 3 35 35 H 1.09001 * 110.02315 * 141.76228 * 6 5 3 36 36 H 1.08996 * 109.47593 * 309.87010 * 8 7 6 37 37 H 1.09008 * 109.46995 * 189.87294 * 8 7 6 38 38 H 1.08008 * 120.14538 * 0.02562 * 12 11 10 39 39 H 1.07994 * 119.58778 * 180.02562 * 13 12 11 40 40 H 1.07995 * 119.71446 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.24069 * 180.02562 * 15 14 13 42 42 H 0.96996 * 119.99399 * 180.02562 * 23 22 20 43 43 H 1.08997 * 110.36948 * 94.73311 * 28 7 6 44 44 H 1.08998 * 110.37389 * 217.07793 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7747 2.2694 0.8579 5 6 1.7834 2.4391 -1.3279 6 6 2.7504 3.6357 -1.4483 7 7 3.9364 3.3229 -0.6300 8 6 5.1624 3.3784 -1.4373 9 6 5.4538 4.8091 -1.8107 10 7 4.6393 5.7319 -1.3979 11 6 4.8380 7.0404 -1.6946 12 6 3.9617 8.0331 -1.2511 13 6 4.2014 9.3496 -1.5762 14 6 5.3049 9.7042 -2.3412 15 6 6.1841 8.7431 -2.7906 16 6 5.9599 7.4048 -2.4728 17 6 6.8600 6.3366 -2.9296 18 8 7.8438 6.5836 -3.6025 19 7 6.5586 5.0687 -2.5644 20 6 7.3690 4.0364 -2.9605 21 1 6.9342 3.1044 -3.2903 22 6 8.7512 4.1893 -2.9378 23 7 9.5057 3.4546 -3.7212 24 14 9.5338 5.4403 -1.7923 25 1 9.9768 4.7624 -0.5476 26 1 10.7051 6.0602 -2.4623 27 1 8.5413 6.4926 -1.4564 28 6 3.7558 1.9828 -0.0322 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7511 2.7829 -1.2632 33 1 1.9088 1.7562 -2.1681 34 1 2.2700 4.5399 -1.0745 35 1 3.0441 3.7750 -2.4887 36 1 5.0284 2.7866 -2.3427 37 1 5.9957 2.9765 -0.8606 38 1 3.0999 7.7694 -0.6559 39 1 3.5228 10.1159 -1.2319 40 1 5.4759 10.7422 -2.5852 41 1 7.0408 9.0249 -3.3848 42 1 10.4697 3.5610 -3.7050 43 1 4.2327 1.2235 -0.6519 44 1 4.1635 1.9601 0.9785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830884000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:30 Heat of formation + Delta-G solvation = 42.992806 kcal Electronic energy + Delta-G solvation = -28250.692279 eV Core-core repulsion = 24487.941062 eV Total energy + Delta-G solvation = -3762.751217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.89010 -38.84630 -37.85092 -36.56398 -33.90942 -32.45639 -32.24119 -30.62570 -29.49788 -28.89531 -28.73946 -26.32993 -25.89109 -23.09621 -22.32480 -21.50468 -21.14971 -20.41747 -18.88909 -18.00279 -17.25071 -16.74899 -16.17742 -15.98505 -15.30643 -15.13000 -14.71901 -14.46512 -14.20268 -13.93329 -13.71641 -13.65028 -13.51169 -13.39385 -13.36437 -13.09655 -12.94910 -12.58345 -12.41196 -12.03269 -11.96866 -11.64274 -11.46936 -11.32229 -11.18940 -11.16308 -10.94501 -10.81698 -10.66492 -10.13071 -10.00227 -9.50052 -9.11343 -9.00192 -8.73623 -8.54182 -8.08897 -7.85038 -7.29004 -6.82911 -4.59562 1.27593 1.41646 1.48500 2.38027 2.89578 3.10143 3.21480 3.27674 3.61738 3.64655 4.11103 4.24839 4.42762 4.55651 4.58452 4.69262 4.89707 4.90998 4.92044 5.01795 5.16503 5.25632 5.31209 5.37627 5.38683 5.45399 5.55716 5.60751 5.67911 5.73939 5.83173 5.90847 5.95141 6.01476 6.03145 6.26640 6.36677 6.49389 6.63019 6.85875 6.88419 7.09610 7.16417 7.21029 7.35254 7.40540 7.90094 8.25345 8.60716 8.93836 9.10269 10.17630 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.003894 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.651812 B = 7188.695866 C = 9226.445243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.253 6.253 3 C -0.063 4.063 4 H 0.100 0.900 5 C -0.139 4.139 6 C 0.063 3.937 7 N -0.502 5.502 8 C 0.118 3.882 9 C 0.361 3.639 10 N -0.532 5.532 11 C 0.167 3.833 12 C -0.126 4.126 13 C -0.087 4.087 14 C -0.172 4.172 15 C -0.039 4.039 16 C -0.213 4.213 17 C 0.510 3.490 18 O -0.526 6.526 19 N -0.366 5.366 20 C -0.388 4.388 21 H 0.119 0.881 22 C 0.109 3.891 23 N -0.811 5.811 24 Si 0.921 3.079 25 H -0.290 1.290 26 H -0.275 1.275 27 H -0.270 1.270 28 C 0.066 3.934 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.118 0.882 41 H 0.125 0.875 42 H 0.286 0.714 43 H 0.058 0.942 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.314 -1.075 7.018 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.026 6.026 3 C -0.193 4.193 4 H 0.119 0.881 5 C -0.180 4.180 6 C -0.066 4.066 7 N -0.226 5.226 8 C -0.012 4.012 9 C 0.098 3.902 10 N -0.258 5.258 11 C 0.051 3.949 12 C -0.146 4.146 13 C -0.107 4.107 14 C -0.191 4.191 15 C -0.059 4.059 16 C -0.221 4.221 17 C 0.307 3.693 18 O -0.404 6.404 19 N -0.070 5.070 20 C -0.513 4.513 21 H 0.137 0.863 22 C -0.109 4.109 23 N -0.439 5.439 24 Si 0.749 3.251 25 H -0.218 1.218 26 H -0.200 1.200 27 H -0.195 1.195 28 C -0.063 4.063 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.127 0.873 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.143 0.857 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.392 -1.643 7.306 16.224 hybrid contribution 0.308 1.264 -0.799 1.527 sum -14.084 -0.379 6.507 15.519 Atomic orbital electron populations 1.23354 0.94471 1.06223 1.04921 1.86861 1.07117 1.10734 1.97901 1.24345 1.00437 0.92975 1.01494 0.88132 1.23240 1.00367 0.98370 0.96001 1.22702 0.89951 0.97178 0.96794 1.63431 1.01690 1.24829 1.32699 1.20992 0.93604 0.89458 0.97106 1.22719 0.85555 0.96149 0.85768 1.68510 1.30434 0.98543 1.28295 1.18859 0.91890 0.91154 0.93031 1.20625 0.99940 0.91247 1.02753 1.21028 0.96904 0.95714 0.97068 1.20880 0.96666 0.98816 1.02727 1.20917 0.97817 0.91110 0.96016 1.20760 0.99384 0.95032 1.06904 1.18367 0.86779 0.82783 0.81329 1.90552 1.28237 1.81723 1.39931 1.42522 1.20380 1.08437 1.35658 1.19248 0.88212 0.95247 1.48606 0.86315 1.25310 0.96115 0.95607 0.93866 1.69699 1.07029 1.37802 1.29396 0.86077 0.79503 0.80772 0.78773 1.21773 1.20021 1.19508 1.22832 0.91749 0.90321 1.01348 0.90576 0.90494 0.88312 0.90876 0.90429 0.89488 0.92703 0.91695 0.87322 0.85436 0.86244 0.86355 0.85704 0.90387 0.92388 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 10.64 101.05 1.08 0.19 16 2 S -0.25 -2.66 21.84 -107.50 -2.35 -5.01 16 3 C -0.06 -0.67 3.56 -24.59 -0.09 -0.76 16 4 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 5 C -0.14 -1.48 6.31 -24.91 -0.16 -1.64 16 6 C 0.06 0.84 5.47 -2.84 -0.02 0.82 16 7 N -0.50 -7.36 4.77 -232.69 -1.11 -8.46 16 8 C 0.12 2.02 3.66 -4.97 -0.02 2.01 16 9 C 0.36 7.50 7.13 -154.87 -1.10 6.40 16 10 N -0.53 -10.62 8.33 -8.10 -0.07 -10.69 16 11 C 0.17 3.37 6.63 -84.50 -0.56 2.81 16 12 C -0.13 -2.08 10.03 -39.25 -0.39 -2.48 16 13 C -0.09 -1.27 10.00 -39.54 -0.40 -1.67 16 14 C -0.17 -2.69 10.02 -39.51 -0.40 -3.08 16 15 C -0.04 -0.76 9.68 -39.32 -0.38 -1.14 16 16 C -0.21 -4.75 5.89 -104.77 -0.62 -5.37 16 17 C 0.51 12.99 5.16 -12.47 -0.06 12.92 16 18 O -0.53 -14.66 12.80 5.17 0.07 -14.59 16 19 N -0.37 -8.87 2.32 -59.56 -0.14 -9.01 16 20 C -0.39 -9.94 8.67 -14.89 -0.13 -10.07 16 21 H 0.12 3.01 7.21 -52.48 -0.38 2.63 16 22 C 0.11 2.92 4.72 -17.49 -0.08 2.83 16 23 N -0.81 -22.14 13.95 55.50 0.77 -21.36 16 24 Si 0.92 23.14 25.65 -169.99 -4.36 18.78 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.27 -7.12 5.38 56.52 0.30 -6.81 16 28 C 0.07 0.82 6.16 -2.30 -0.01 0.80 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.85 8.04 -51.93 -0.42 0.44 16 34 H 0.09 1.21 8.09 -51.93 -0.42 0.78 16 35 H 0.05 0.81 7.31 -51.93 -0.38 0.43 16 36 H 0.07 1.10 7.40 -51.93 -0.38 0.71 16 37 H 0.11 1.86 7.97 -51.92 -0.41 1.45 16 38 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 39 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 41 H 0.13 2.39 7.83 -52.49 -0.41 1.98 16 42 H 0.29 7.25 8.30 -40.82 -0.34 6.91 16 43 H 0.06 0.74 7.70 -51.93 -0.40 0.34 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 365.87 15.07 5.51 5.51 Total: -1.00 -29.95 365.87 -11.25 -41.21 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.24 Total: 1.04 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -3.34 Total: 2.59 kcal Atomic # 7 Polarization: -48.98 SS G_CDS: -0.54 Total: -49.52 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.07 Total: -14.59 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -4.36 Total: 18.78 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -2.35 Total: -5.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.95 -11.25 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830884000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.199 kcal (2) G-P(sol) polarization free energy of solvation -29.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds