Wall clock time and date at job start Wed Apr 1 2020 02:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81400 * 103.00261 * 2 1 4 4 H 1.08995 * 110.87421 * 57.39004 * 3 2 1 5 5 C 1.55141 * 110.99010 * 293.54222 * 3 2 1 6 6 C 1.54312 * 103.01946 * 206.25253 * 5 3 2 7 7 N 1.47447 * 107.23358 * 22.28640 * 6 5 3 8 8 C 1.46898 * 110.99793 * 123.25520 * 7 6 5 9 9 C 1.50704 * 109.47344 * 69.87688 * 8 7 6 10 10 N 1.29822 * 118.34516 * 359.97438 * 9 8 7 11 11 C 1.35635 * 121.62605 * 179.97438 * 10 9 8 12 12 C 1.39635 * 121.62915 * 179.97438 * 11 10 9 13 13 C 1.37706 * 119.69884 * 180.02562 * 12 11 10 14 14 C 1.38877 * 120.82480 * 0.02562 * 13 12 11 15 15 C 1.37792 * 120.57028 * 359.97438 * 14 13 12 16 16 C 1.39376 * 119.51947 * 0.02562 * 15 14 13 17 17 C 1.46964 * 121.90567 * 179.71830 * 16 15 14 18 18 O 1.21720 * 121.28839 * 0.27592 * 17 16 15 19 19 N 1.35342 * 117.42483 * 179.78086 * 17 16 15 20 20 C 1.37094 * 119.72029 * 180.23356 * 19 17 16 21 21 H 1.08005 * 120.00251 * 220.97900 * 20 19 17 22 22 C 1.39077 * 120.00013 * 40.97510 * 20 19 17 23 23 N 1.31259 * 120.00045 * 204.25429 * 22 20 19 24 24 Si 1.86803 * 119.99876 * 24.25711 * 22 20 19 25 25 H 1.48499 * 109.46867 * 96.56804 * 24 22 20 26 26 H 1.48497 * 109.47202 * 216.57073 * 24 22 20 27 27 H 1.48501 * 109.46877 * 336.57291 * 24 22 20 28 28 C 1.47847 * 108.56716 * 0.98679 * 7 6 5 29 29 H 1.08995 * 109.47156 * 300.00385 * 1 2 3 30 30 H 1.09009 * 109.46680 * 60.00114 * 1 2 3 31 31 H 1.08997 * 109.47330 * 179.97438 * 1 2 3 32 32 H 1.08998 * 110.70282 * 87.87041 * 5 3 2 33 33 H 1.09000 * 110.85358 * 324.71059 * 5 3 2 34 34 H 1.08999 * 109.89460 * 262.87752 * 6 5 3 35 35 H 1.09001 * 110.02315 * 141.76228 * 6 5 3 36 36 H 1.08996 * 109.47593 * 309.87010 * 8 7 6 37 37 H 1.09008 * 109.46995 * 189.87294 * 8 7 6 38 38 H 1.08008 * 120.14538 * 0.02562 * 12 11 10 39 39 H 1.07994 * 119.58778 * 180.02562 * 13 12 11 40 40 H 1.07995 * 119.71446 * 180.02562 * 14 13 12 41 41 H 1.08000 * 120.24069 * 180.02562 * 15 14 13 42 42 H 0.96996 * 119.99399 * 180.02562 * 23 22 20 43 43 H 1.08997 * 110.36948 * 94.73311 * 28 7 6 44 44 H 1.08998 * 110.37389 * 217.07793 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7747 2.2694 0.8579 5 6 1.7834 2.4391 -1.3279 6 6 2.7504 3.6357 -1.4483 7 7 3.9364 3.3229 -0.6300 8 6 5.1624 3.3784 -1.4373 9 6 5.4538 4.8091 -1.8107 10 7 4.6393 5.7319 -1.3979 11 6 4.8380 7.0404 -1.6946 12 6 3.9617 8.0331 -1.2511 13 6 4.2014 9.3496 -1.5762 14 6 5.3049 9.7042 -2.3412 15 6 6.1841 8.7431 -2.7906 16 6 5.9599 7.4048 -2.4728 17 6 6.8600 6.3366 -2.9296 18 8 7.8438 6.5836 -3.6025 19 7 6.5586 5.0687 -2.5644 20 6 7.3690 4.0364 -2.9605 21 1 6.9342 3.1044 -3.2903 22 6 8.7512 4.1893 -2.9378 23 7 9.5057 3.4546 -3.7212 24 14 9.5338 5.4403 -1.7923 25 1 9.9768 4.7624 -0.5476 26 1 10.7051 6.0602 -2.4623 27 1 8.5413 6.4926 -1.4564 28 6 3.7558 1.9828 -0.0322 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 0.7511 2.7829 -1.2632 33 1 1.9088 1.7562 -2.1681 34 1 2.2700 4.5399 -1.0745 35 1 3.0441 3.7750 -2.4887 36 1 5.0284 2.7866 -2.3427 37 1 5.9957 2.9765 -0.8606 38 1 3.0999 7.7694 -0.6559 39 1 3.5228 10.1159 -1.2319 40 1 5.4759 10.7422 -2.5852 41 1 7.0408 9.0249 -3.3848 42 1 10.4697 3.5610 -3.7050 43 1 4.2327 1.2235 -0.6519 44 1 4.1635 1.9601 0.9785 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830884000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:29 Heat of formation + Delta-G solvation = 25.247403 kcal Electronic energy + Delta-G solvation = -28251.461777 eV Core-core repulsion = 24487.941062 eV Total energy + Delta-G solvation = -3763.520715 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.125 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.58102 -40.00878 -39.41260 -38.23654 -35.68154 -34.13345 -33.63014 -32.09981 -30.70148 -29.84497 -29.61106 -27.78572 -27.59836 -24.75633 -23.73864 -22.81241 -22.28620 -21.63648 -20.68726 -19.64098 -18.80728 -18.07024 -17.56788 -17.15727 -16.90452 -16.52829 -16.15099 -15.88128 -15.71091 -15.31933 -15.07063 -14.96971 -14.80635 -14.70274 -14.53570 -14.28523 -14.19319 -14.07859 -13.53738 -13.49108 -13.04219 -12.98731 -12.86037 -12.73183 -12.65360 -12.52231 -12.36622 -12.06370 -12.02916 -11.75796 -11.32510 -10.99200 -10.79562 -10.68029 -10.59418 -10.00654 -9.27624 -8.92305 -8.79143 -8.65456 -6.60634 -0.25171 -0.08932 0.71595 1.03916 1.16844 1.20883 1.40715 1.66441 1.90217 1.97821 2.22410 2.65730 3.07327 3.11160 3.23418 3.47190 3.61526 3.63551 3.87768 4.05275 4.09593 4.17735 4.29373 4.33360 4.38800 4.40552 4.41380 4.47108 4.51021 4.60123 4.71337 4.82561 4.87020 4.94281 4.97379 5.03134 5.07081 5.19598 5.30655 5.31761 5.48920 5.50269 5.57692 5.88764 5.96240 6.02960 6.12402 6.35439 6.68494 7.19266 7.28271 8.21593 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.003894 C = 0.003034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.651812 B = 7188.695866 C = 9226.445243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 S -0.294 6.294 3 C -0.049 4.049 4 H 0.111 0.889 5 C -0.127 4.127 6 C 0.064 3.936 7 N -0.507 5.507 8 C 0.126 3.874 9 C 0.358 3.642 10 N -0.512 5.512 11 C 0.138 3.862 12 C -0.118 4.118 13 C -0.067 4.067 14 C -0.143 4.143 15 C -0.070 4.070 16 C -0.239 4.239 17 C 0.490 3.510 18 O -0.571 6.571 19 N -0.384 5.384 20 C -0.393 4.393 21 H 0.111 0.889 22 C 0.080 3.920 23 N -0.850 5.850 24 Si 0.955 3.045 25 H -0.271 1.271 26 H -0.284 1.284 27 H -0.290 1.290 28 C 0.064 3.936 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.161 0.839 41 H 0.114 0.886 42 H 0.288 0.712 43 H 0.051 0.949 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.393 1.106 9.191 21.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.067 6.067 3 C -0.178 4.178 4 H 0.129 0.871 5 C -0.168 4.168 6 C -0.065 4.065 7 N -0.231 5.231 8 C -0.004 4.004 9 C 0.094 3.906 10 N -0.236 5.236 11 C 0.023 3.977 12 C -0.137 4.137 13 C -0.086 4.086 14 C -0.161 4.161 15 C -0.089 4.089 16 C -0.245 4.245 17 C 0.289 3.711 18 O -0.454 6.454 19 N -0.090 5.090 20 C -0.519 4.519 21 H 0.128 0.872 22 C -0.133 4.133 23 N -0.480 5.480 24 Si 0.783 3.217 25 H -0.198 1.198 26 H -0.210 1.210 27 H -0.217 1.217 28 C -0.064 4.064 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.115 0.885 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.053 0.947 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.175 0.825 39 H 0.193 0.807 40 H 0.178 0.822 41 H 0.132 0.868 42 H 0.099 0.901 43 H 0.069 0.931 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.530 0.548 9.527 20.843 hybrid contribution 1.238 0.867 -1.382 2.048 sum -17.292 1.414 8.146 19.167 Atomic orbital electron populations 1.23423 0.91049 1.07357 1.05951 1.87059 1.10900 1.10754 1.97999 1.24193 0.98791 0.93096 1.01759 0.87093 1.23154 1.00836 0.96930 0.95845 1.22675 0.89991 0.98490 0.95351 1.63428 1.01063 1.26438 1.32215 1.20908 0.94918 0.87265 0.97323 1.23346 0.83959 0.97867 0.85383 1.68598 1.29214 0.98762 1.27046 1.19364 0.92523 0.91946 0.93836 1.21074 0.99553 0.91239 1.01816 1.21660 0.96462 0.96013 0.94504 1.21427 0.94991 0.99866 0.99827 1.21083 0.99244 0.90948 0.97658 1.20923 0.99830 0.95426 1.08332 1.19027 0.87026 0.83893 0.81188 1.90487 1.30182 1.82507 1.42247 1.42528 1.21326 1.07844 1.37312 1.19135 0.88223 0.95427 1.49096 0.87197 1.25693 0.96802 0.96292 0.94539 1.69731 1.07314 1.39801 1.31199 0.85579 0.78065 0.79393 0.78670 1.19825 1.20984 1.21673 1.22865 0.93500 0.88884 1.01119 0.89320 0.89636 0.87158 0.88482 0.90916 0.89483 0.94716 0.91951 0.87695 0.82542 0.80714 0.82171 0.86759 0.90143 0.93098 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.64 113.37 1.21 -0.08 16 2 S -0.29 -5.71 21.84 -56.49 -1.23 -6.94 16 3 C -0.05 -0.95 3.56 31.98 0.11 -0.84 16 4 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 5 C -0.13 -2.44 6.31 31.77 0.20 -2.24 16 6 C 0.06 1.63 5.47 86.64 0.47 2.11 16 7 N -0.51 -14.58 4.77 -890.09 -4.24 -18.82 16 8 C 0.13 4.45 3.66 85.56 0.31 4.76 16 9 C 0.36 15.28 7.13 137.94 0.98 16.26 16 10 N -0.51 -20.13 8.33 -179.53 -1.50 -21.62 16 11 C 0.14 5.35 6.63 39.65 0.26 5.62 16 12 C -0.12 -3.35 10.03 22.48 0.23 -3.13 16 13 C -0.07 -1.53 10.00 22.30 0.22 -1.31 16 14 C -0.14 -3.80 10.02 22.32 0.22 -3.58 16 15 C -0.07 -2.63 9.68 22.44 0.22 -2.41 16 16 C -0.24 -10.69 5.89 -19.96 -0.12 -10.80 16 17 C 0.49 26.12 5.16 86.44 0.45 26.57 16 18 O -0.57 -33.84 12.80 -4.41 -0.06 -33.90 16 19 N -0.38 -19.51 2.32 -460.24 -1.07 -20.58 16 20 C -0.39 -21.39 8.67 84.07 0.73 -20.66 16 21 H 0.11 5.97 7.21 -2.91 -0.02 5.95 16 22 C 0.08 4.54 4.72 84.98 0.40 4.94 16 23 N -0.85 -49.03 13.95 21.68 0.30 -48.72 16 24 Si 0.95 49.82 25.65 68.60 1.76 51.58 16 25 H -0.27 -12.98 7.11 99.48 0.71 -12.28 16 26 H -0.28 -14.96 7.11 99.48 0.71 -14.25 16 27 H -0.29 -16.02 5.38 99.48 0.54 -15.49 16 28 C 0.06 1.55 6.16 86.77 0.53 2.08 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.49 8.04 -2.39 -0.02 1.48 16 34 H 0.09 2.22 8.09 -2.39 -0.02 2.20 16 35 H 0.03 1.02 7.31 -2.39 -0.02 1.01 16 36 H 0.06 2.23 7.40 -2.39 -0.02 2.21 16 37 H 0.11 3.77 7.97 -2.38 -0.02 3.75 16 38 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 39 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 40 H 0.16 2.99 8.06 -2.91 -0.02 2.97 16 41 H 0.11 4.48 7.83 -2.91 -0.02 4.45 16 42 H 0.29 15.50 8.30 -92.71 -0.77 14.73 16 43 H 0.05 1.30 7.70 -2.39 -0.02 1.29 16 44 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -70.89 365.87 1.24 -69.65 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.84 Total: 12.06 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 6.44 Total: 17.30 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -6.51 Total: -109.75 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -0.06 Total: -33.90 kcal Atomic # 14 Polarization: 49.82 SS G_CDS: 1.76 Total: 51.58 kcal Atomic # 16 Polarization: -5.71 SS G_CDS: -1.23 Total: -6.94 kcal Total: -70.89 1.24 -69.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830884000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.898 kcal (2) G-P(sol) polarization free energy of solvation -70.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds