Wall clock time and date at job start Wed Apr 1 2020 02:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99833 * 2 1 4 4 H 1.48497 * 109.46882 * 275.21142 * 3 2 1 5 5 H 1.48506 * 109.47359 * 35.21142 * 3 2 1 6 6 H 1.48498 * 109.47356 * 155.21398 * 3 2 1 7 7 C 1.38809 * 120.00444 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99791 * 336.77258 * 7 2 1 9 9 N 1.36936 * 120.00369 * 156.75949 * 7 2 1 10 10 C 1.46504 * 119.99977 * 322.28739 * 9 7 2 11 11 C 1.50697 * 109.46669 * 262.66779 * 10 9 7 12 12 O 1.20827 * 120.00240 * 0.02562 * 11 10 9 13 13 O 1.34233 * 119.99870 * 179.97438 * 11 10 9 14 14 C 1.46495 * 119.99970 * 142.27492 * 9 7 2 15 15 C 1.53002 * 109.47590 * 270.00665 * 14 9 7 16 16 H 1.08999 * 109.47138 * 304.99910 * 15 14 9 17 17 O 1.42898 * 109.46856 * 65.00075 * 15 14 9 18 18 C 1.52996 * 109.47022 * 184.99898 * 15 14 9 19 19 O 1.42906 * 109.46997 * 174.99830 * 18 15 14 20 20 C 1.35886 * 117.00198 * 179.97438 * 19 18 15 21 21 C 1.39852 * 119.56401 * 0.02562 * 20 19 18 22 22 C 1.35986 * 120.93129 * 179.97438 * 21 20 19 23 23 C 1.40594 * 119.73234 * 359.97438 * 22 21 20 24 24 C 1.40522 * 121.22692 * 180.02562 * 23 22 21 25 25 C 1.36101 * 119.67226 * 179.97438 * 24 23 22 26 26 C 1.39368 * 120.99953 * 359.97438 * 25 24 23 27 27 C 1.36091 * 120.97691 * 0.02562 * 26 25 24 28 28 C 1.40576 * 119.65842 * 359.97438 * 27 26 25 29 29 C 1.36566 * 119.57306 * 179.73297 * 20 19 18 30 30 H 0.97002 * 120.00580 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46735 * 22.66745 * 10 9 7 32 32 H 1.09000 * 109.46862 * 142.67268 * 10 9 7 33 33 H 0.96699 * 116.99670 * 180.02562 * 13 11 10 34 34 H 1.09007 * 109.47308 * 30.01021 * 14 9 7 35 35 H 1.09002 * 109.46951 * 150.00578 * 14 9 7 36 36 H 0.96697 * 114.00337 * 59.99963 * 17 15 14 37 37 H 1.08996 * 109.47861 * 295.00024 * 18 15 14 38 38 H 1.09002 * 109.47309 * 55.00318 * 18 15 14 39 39 H 1.08001 * 119.53819 * 0.02562 * 21 20 19 40 40 H 1.08005 * 120.13563 * 179.97438 * 22 21 20 41 41 H 1.07997 * 120.16145 * 359.95433 * 24 23 22 42 42 H 1.08004 * 119.50068 * 180.02562 * 25 24 23 43 43 H 1.07997 * 119.51648 * 179.97438 * 26 25 24 44 44 H 1.07997 * 120.17352 * 179.97438 * 27 26 25 45 45 H 1.08010 * 120.18054 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3874 2.1100 -1.3943 5 1 1.5070 2.6185 0.8073 6 1 3.5984 1.4110 0.5869 7 6 2.0103 -1.2021 0.0005 8 1 1.5360 -2.0994 0.3698 9 7 3.2963 -1.2504 -0.4674 10 6 3.6838 -0.4464 -1.6292 11 6 3.6349 -1.3006 -2.8698 12 8 3.3094 -2.4615 -2.7916 13 8 3.9521 -0.7713 -4.0619 14 6 4.2848 -2.1057 0.1940 15 6 4.9877 -1.3134 1.2981 16 1 5.4135 -0.4027 0.8770 17 8 4.0430 -0.9719 2.3144 18 6 6.1042 -2.1652 1.9052 19 8 6.8353 -1.3861 2.8543 20 6 7.8688 -1.9982 3.4897 21 6 8.1670 -3.3324 3.1951 22 6 9.1952 -3.9719 3.8139 23 6 9.9725 -3.2859 4.7636 24 6 11.0425 -3.9159 5.4215 25 6 11.7744 -3.2216 6.3350 26 6 11.4799 -1.8917 6.6296 27 6 10.4513 -1.2487 6.0125 28 6 9.6728 -1.9332 5.0630 29 6 8.6064 -1.3007 4.4032 30 1 -0.4851 0.8400 -0.0004 31 1 2.9948 0.3912 -1.7374 32 1 4.6963 -0.0684 -1.4880 33 1 3.9056 -1.3582 -4.8291 34 1 3.7837 -2.9702 0.6298 35 1 5.0206 -2.4424 -0.5363 36 1 3.6234 -1.7354 2.7341 37 1 5.6701 -3.0317 2.4039 38 1 6.7765 -2.4998 1.1151 39 1 7.5728 -3.8621 2.4652 40 1 9.4139 -5.0027 3.5768 41 1 11.2826 -4.9460 5.2035 42 1 12.5965 -3.7085 6.8387 43 1 12.0762 -1.3636 7.3589 44 1 10.2343 -0.2180 6.2510 45 1 8.3696 -0.2691 4.6185 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:59 Heat of formation + Delta-G solvation = -103.089006 kcal Electronic energy + Delta-G solvation = -29346.975899 eV Core-core repulsion = 25102.844477 eV Total energy + Delta-G solvation = -4244.131422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.76641 -39.50533 -39.11018 -37.30006 -35.77171 -35.40163 -34.71651 -32.89880 -31.84631 -30.52110 -30.03510 -29.03039 -27.70185 -25.87649 -23.82050 -23.07789 -22.33903 -22.08098 -21.45750 -20.26185 -18.42021 -17.48647 -17.45846 -17.21250 -16.94954 -16.28020 -16.24481 -15.71200 -15.38806 -15.31533 -14.94318 -14.61906 -14.36746 -14.27971 -14.03626 -13.66441 -13.51067 -13.39991 -13.30102 -13.09948 -12.72140 -12.41917 -12.34590 -11.90683 -11.73402 -11.47897 -11.42689 -11.01061 -10.97678 -10.83690 -10.73326 -10.63313 -10.47463 -10.32619 -9.98426 -9.87303 -9.82301 -9.42705 -8.63734 -8.59003 -7.82603 -7.12783 -6.10428 -3.55289 0.34449 0.85596 1.87164 2.80510 2.96010 3.12228 3.24878 3.46844 3.54708 3.70140 3.93529 4.36994 4.43997 4.59349 4.66617 4.69883 4.70949 4.85095 4.96270 5.01686 5.04464 5.11463 5.17239 5.20567 5.31250 5.43542 5.56158 5.59749 5.70321 5.74434 5.76842 5.82023 5.96901 6.01682 6.05157 6.08293 6.17031 6.23704 6.28765 6.33073 6.54828 6.56771 6.74585 7.10927 7.37213 7.80887 8.21198 8.30453 8.57272 8.79397 9.54564 9.84801 11.03659 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.017091 B = 0.002320 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.904633 B =12063.755651 C =12861.540313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.044 3.956 3 Si 0.867 3.133 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.254 1.254 7 C -0.266 4.266 8 H 0.082 0.918 9 N -0.561 5.561 10 C 0.139 3.861 11 C 0.443 3.557 12 O -0.507 6.507 13 O -0.535 6.535 14 C 0.127 3.873 15 C 0.089 3.911 16 H 0.097 0.903 17 O -0.530 6.530 18 C 0.025 3.975 19 O -0.301 6.301 20 C 0.140 3.860 21 C -0.188 4.188 22 C -0.068 4.068 23 C -0.089 4.089 24 C -0.093 4.093 25 C -0.135 4.135 26 C -0.109 4.109 27 C -0.115 4.115 28 C -0.011 4.011 29 C -0.162 4.162 30 H 0.266 0.734 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.390 0.610 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.368 0.632 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.121 0.879 44 H 0.127 0.873 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.991 -5.914 7.464 23.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.158 4.158 3 Si 0.696 3.304 4 H -0.216 1.216 5 H -0.223 1.223 6 H -0.178 1.178 7 C -0.395 4.395 8 H 0.100 0.900 9 N -0.280 5.280 10 C 0.009 3.991 11 C 0.282 3.718 12 O -0.393 6.393 13 O -0.346 6.346 14 C 0.000 4.000 15 C 0.026 3.974 16 H 0.115 0.885 17 O -0.334 6.334 18 C -0.051 4.051 19 O -0.214 6.214 20 C 0.094 3.906 21 C -0.206 4.206 22 C -0.086 4.086 23 C -0.089 4.089 24 C -0.111 4.111 25 C -0.153 4.153 26 C -0.127 4.127 27 C -0.133 4.133 28 C -0.011 4.011 29 C -0.181 4.181 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.214 0.786 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.145 0.855 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 21.806 -5.099 7.712 23.685 hybrid contribution 0.155 -0.284 -0.587 0.670 sum 21.960 -5.383 7.125 23.707 Atomic orbital electron populations 1.69879 1.06153 1.27110 1.49664 1.25459 0.95057 0.97954 0.97374 0.87073 0.82044 0.84447 0.76823 1.21600 1.22334 1.17775 1.18634 0.86116 0.94647 1.40062 0.90042 1.43651 1.08691 1.51187 1.24462 1.21268 1.01563 0.93875 0.82375 1.26242 0.72085 0.88684 0.84808 1.90611 1.43133 1.19115 1.86483 1.84695 1.82336 1.48877 1.18652 1.21538 0.91882 0.93469 0.93117 1.22809 0.86273 0.99019 0.89259 0.88502 1.86686 1.57892 1.35806 1.52978 1.23886 0.94652 0.95656 0.90947 1.86254 1.41319 1.40247 1.53541 1.18798 0.88255 0.91042 0.92482 1.21165 1.01017 0.94647 1.03806 1.20884 0.93872 0.99401 0.94465 1.18057 0.97834 0.93774 0.99206 1.20985 0.94499 0.99532 0.96078 1.20781 1.00506 0.94872 0.99141 1.20843 0.97428 0.94908 0.99550 1.20996 0.95754 0.99961 0.96578 1.17787 0.94775 0.92785 0.95791 1.20171 0.97311 1.00984 0.99667 0.92423 0.88037 0.90184 0.75248 0.91574 0.92984 0.78617 0.91697 0.91551 0.85022 0.85194 0.85768 0.86195 0.86085 0.85508 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.97 55.49 0.78 -25.62 16 2 C 0.04 1.21 5.23 -17.43 -0.09 1.12 16 3 Si 0.87 21.23 25.14 -169.99 -4.27 16.96 16 4 H -0.29 -6.76 6.67 56.52 0.38 -6.38 16 5 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 6 H -0.25 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.27 -7.05 9.41 -15.06 -0.14 -7.19 16 8 H 0.08 2.36 8.06 -52.48 -0.42 1.93 16 9 N -0.56 -12.43 1.57 -174.61 -0.27 -12.70 16 10 C 0.14 2.85 4.85 -5.19 -0.03 2.83 16 11 C 0.44 8.80 8.37 36.00 0.30 9.10 16 12 O -0.51 -11.50 17.10 -18.75 -0.32 -11.82 16 13 O -0.53 -8.57 13.42 -39.27 -0.53 -9.09 16 14 C 0.13 2.24 5.26 -4.04 -0.02 2.22 16 15 C 0.09 1.46 3.49 -26.73 -0.09 1.37 16 16 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 17 O -0.53 -10.03 12.78 -40.08 -0.51 -10.54 16 18 C 0.02 0.32 4.36 37.16 0.16 0.49 16 19 O -0.30 -4.47 10.08 -24.23 -0.24 -4.72 16 20 C 0.14 1.86 6.63 -39.58 -0.26 1.60 16 21 C -0.19 -2.10 8.93 -39.79 -0.36 -2.45 16 22 C -0.07 -0.68 9.76 -39.50 -0.39 -1.07 16 23 C -0.09 -0.96 5.74 -106.81 -0.61 -1.57 16 24 C -0.09 -0.82 9.77 -39.49 -0.39 -1.21 16 25 C -0.13 -1.10 9.95 -39.93 -0.40 -1.49 16 26 C -0.11 -0.92 9.95 -39.93 -0.40 -1.31 16 27 C -0.11 -1.12 9.77 -39.47 -0.39 -1.51 16 28 C -0.01 -0.13 5.74 -106.84 -0.61 -0.74 16 29 C -0.16 -2.06 9.68 -39.35 -0.38 -2.44 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.10 2.29 3.76 -51.93 -0.20 2.09 16 32 H 0.08 1.39 8.12 -51.93 -0.42 0.96 16 33 H 0.39 4.43 9.10 45.56 0.41 4.85 16 34 H 0.07 1.15 8.04 -51.93 -0.42 0.73 16 35 H 0.05 0.82 8.07 -51.93 -0.42 0.40 16 36 H 0.37 5.80 9.05 45.56 0.41 6.21 16 37 H 0.06 0.74 7.63 -51.93 -0.40 0.35 16 38 H 0.07 0.74 7.63 -51.93 -0.40 0.34 16 39 H 0.13 1.25 6.21 -52.49 -0.33 0.92 16 40 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 44 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 45 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -34.73 382.31 -7.99 -42.72 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -4.29 Total: 11.32 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -4.09 Total: -2.28 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.50 Total: -38.32 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.60 Total: -36.17 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.27 Total: 16.96 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.73 -7.99 -42.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.368 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds