Wall clock time and date at job start Wed Apr 1 2020 03:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86793 * 120.00133 * 2 1 4 4 H 1.48504 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47531 * 300.00135 * 3 2 1 6 6 H 1.48500 * 109.47344 * 60.00285 * 3 2 1 7 7 C 1.38891 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99989 * 193.35698 * 7 2 1 9 9 N 1.37144 * 119.99995 * 13.35309 * 7 2 1 10 10 C 1.34770 * 120.00201 * 201.11454 * 9 7 2 11 11 O 1.21282 * 120.00242 * 183.19109 * 10 9 7 12 12 C 1.50703 * 120.00085 * 3.19431 * 10 9 7 13 13 O 1.45200 * 109.47226 * 179.97438 * 12 10 9 14 14 C 1.34797 * 116.99585 * 179.97438 * 13 12 10 15 15 O 1.21539 * 120.00553 * 0.02562 * 14 13 12 16 16 C 1.46956 * 119.99960 * 180.02562 * 14 13 12 17 17 C 1.33082 * 120.00256 * 187.36337 * 16 14 13 18 18 C 1.50705 * 120.00058 * 17.19594 * 17 16 14 19 19 H 1.09000 * 110.45157 * 8.23495 * 18 17 16 20 20 C 1.54505 * 110.51045 * 130.83606 * 18 17 16 21 21 C 1.54478 * 104.06141 * 118.64456 * 20 18 17 22 22 O 1.44426 * 104.80342 * 23.98198 * 21 20 18 23 23 C 1.44431 * 105.27325 * 319.48504 * 22 21 20 24 24 C 1.39789 * 119.99850 * 21.12006 * 9 7 2 25 25 C 1.38963 * 120.07644 * 249.16955 * 24 9 7 26 26 C 1.38080 * 119.92270 * 179.97438 * 25 24 9 27 27 C 1.38317 * 120.07735 * 359.97438 * 26 25 24 28 28 C 1.38307 * 120.15358 * 359.97438 * 27 26 25 29 29 C 1.38080 * 120.07917 * 0.02562 * 28 27 26 30 30 H 0.97000 * 119.99875 * 4.96252 * 1 2 3 31 31 H 1.09003 * 109.46831 * 300.00150 * 12 10 9 32 32 H 1.09002 * 109.47008 * 59.99608 * 12 10 9 33 33 H 1.07998 * 119.99564 * 7.36195 * 16 14 13 34 34 H 1.08001 * 120.00244 * 197.19513 * 17 16 14 35 35 H 1.08996 * 110.51118 * 237.28950 * 20 18 17 36 36 H 1.08997 * 110.51137 * 359.97438 * 20 18 17 37 37 H 1.09001 * 110.37146 * 142.80706 * 21 20 18 38 38 H 1.08998 * 110.37216 * 265.14452 * 21 20 18 39 39 H 1.09003 * 110.37303 * 281.68398 * 23 22 21 40 40 H 1.08995 * 110.37248 * 159.34780 * 23 22 21 41 41 H 1.07999 * 120.03696 * 359.94736 * 25 24 9 42 42 H 1.07994 * 119.96435 * 180.02562 * 26 25 24 43 43 H 1.08000 * 119.92078 * 179.72294 * 27 26 25 44 44 H 1.08005 * 119.95905 * 179.97438 * 28 27 26 45 45 H 1.08002 * 120.03723 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7083 1.3463 -0.0006 5 1 1.8896 2.3964 -1.2124 6 1 1.8896 2.3964 1.2125 7 6 2.0087 -1.2029 -0.0005 8 1 3.0667 -1.2156 0.2155 9 7 1.3507 -2.3744 -0.2754 10 6 1.8734 -3.5506 0.1241 11 8 1.3217 -4.5901 -0.1689 12 6 3.1435 -3.5741 0.9350 13 8 3.4981 -4.9489 1.2392 14 6 4.6177 -5.1461 1.9635 15 8 5.2792 -4.1950 2.3311 16 6 5.0386 -6.5111 2.3087 17 6 6.0572 -6.7023 3.1436 18 6 6.5280 -5.5766 4.0282 19 1 5.8426 -4.7314 3.9662 20 6 6.6637 -6.0575 5.4902 21 6 8.1616 -5.8605 5.8126 22 8 8.6051 -4.8372 4.8949 23 6 7.9598 -5.1459 3.6401 24 6 0.1379 -2.3484 -0.9700 25 6 -1.0447 -2.6781 -0.3189 26 6 -2.2410 -2.6510 -1.0080 27 6 -2.2632 -2.2956 -2.3445 28 6 -1.0882 -1.9658 -2.9954 29 6 0.1116 -1.9909 -2.3125 30 1 -0.4850 0.8369 -0.0727 31 1 3.9474 -3.1088 0.3646 32 1 2.9917 -3.0243 1.8639 33 1 4.5213 -7.3591 1.8849 34 1 6.5465 -7.6641 3.1873 35 1 6.0474 -5.4484 6.1514 36 1 6.3899 -7.1093 5.5733 37 1 8.2873 -5.5267 6.8426 38 1 8.7112 -6.7864 5.6431 39 1 8.4785 -5.9622 3.1374 40 1 7.9306 -4.2633 3.0013 41 1 -1.0281 -2.9557 0.7246 42 1 -3.1605 -2.9067 -0.5026 43 1 -3.1997 -2.2795 -2.8822 44 1 -1.1092 -1.6892 -4.0392 45 1 1.0287 -1.7328 -2.8213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838046289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:23 Heat of formation + Delta-G solvation = -95.275308 kcal Electronic energy + Delta-G solvation = -29585.213537 eV Core-core repulsion = 25341.420942 eV Total energy + Delta-G solvation = -4243.792595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48911 -39.58267 -39.20226 -37.40232 -36.25143 -34.82217 -34.43131 -31.79282 -31.26355 -29.93319 -29.73308 -29.02216 -27.47759 -25.07892 -24.04777 -22.97608 -21.75177 -21.53438 -21.16199 -19.76990 -19.37714 -18.02181 -17.50767 -16.68129 -16.40473 -16.20561 -16.00974 -15.55578 -15.36015 -15.04697 -14.80264 -14.55208 -14.37619 -14.15001 -13.69844 -13.47551 -13.34358 -12.97616 -12.83857 -12.49681 -12.22435 -12.22074 -11.98707 -11.73853 -11.64909 -11.56223 -11.35686 -11.21698 -11.15425 -11.02269 -10.59776 -10.41295 -10.36225 -10.26965 -10.07085 -9.81659 -9.49690 -9.48073 -8.73724 -8.33523 -7.90731 -7.55475 -6.35468 -4.20613 0.94610 2.38554 2.45428 2.81706 2.94419 3.03054 3.16050 3.18773 3.57105 3.78189 3.96865 4.38711 4.44991 4.50831 4.70757 4.76283 4.85029 4.90882 5.02591 5.05293 5.20026 5.23055 5.42555 5.50656 5.60264 5.65708 5.74673 5.76423 5.78612 5.83486 5.88266 5.89006 5.95886 5.98759 6.24734 6.37670 6.51528 6.59440 6.72125 6.76620 6.98823 7.19780 7.28729 7.41022 7.52113 7.68125 7.90702 7.92952 8.30593 8.86325 9.17705 9.60304 10.50176 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002595 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.773939 B =10788.288835 C =12169.505592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.050 3.950 3 Si 0.919 3.081 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.362 4.362 8 H 0.103 0.897 9 N -0.404 5.404 10 C 0.467 3.533 11 O -0.574 6.574 12 C 0.073 3.927 13 O -0.329 6.329 14 C 0.488 3.512 15 O -0.507 6.507 16 C -0.182 4.182 17 C -0.053 4.053 18 C -0.127 4.127 19 H 0.128 0.872 20 C -0.148 4.148 21 C 0.044 3.956 22 O -0.375 6.375 23 C 0.062 3.938 24 C 0.238 3.762 25 C -0.080 4.080 26 C -0.118 4.118 27 C -0.148 4.148 28 C -0.120 4.120 29 C -0.120 4.120 30 H 0.273 0.727 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.579 -9.493 5.591 13.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.159 4.159 3 Si 0.744 3.256 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.488 4.488 8 H 0.120 0.880 9 N -0.122 5.122 10 C 0.256 3.744 11 O -0.457 6.457 12 C -0.004 4.004 13 O -0.244 6.244 14 C 0.334 3.666 15 O -0.399 6.399 16 C -0.201 4.201 17 C -0.071 4.071 18 C -0.145 4.145 19 H 0.146 0.854 20 C -0.186 4.186 21 C -0.033 4.033 22 O -0.294 6.294 23 C -0.015 4.015 24 C 0.147 3.853 25 C -0.099 4.099 26 C -0.137 4.137 27 C -0.166 4.166 28 C -0.139 4.139 29 C -0.140 4.140 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.116 0.884 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.454 -9.369 5.654 13.828 hybrid contribution 0.185 1.065 -0.044 1.082 sum 8.639 -8.304 5.610 13.231 Atomic orbital electron populations 1.69937 1.05766 1.28327 1.43485 1.25283 0.95423 0.99828 0.95376 0.85995 0.79876 0.81529 0.78157 1.19034 1.20316 1.20461 1.19662 0.93883 0.83280 1.51993 0.87982 1.41160 1.18698 1.05435 1.46871 1.19607 0.87166 0.83988 0.83630 1.90623 1.63553 1.32027 1.59483 1.22627 0.97389 0.78991 1.01352 1.86608 1.40702 1.31782 1.65305 1.21625 0.78672 0.90537 0.75731 1.90751 1.54163 1.44217 1.50810 1.22082 0.99752 0.94248 1.03970 1.23716 0.92485 0.99546 0.91373 1.22383 1.00231 0.98888 0.92989 0.85404 1.23038 0.97420 1.02298 0.95857 1.23429 0.93276 0.91787 0.94839 1.89147 1.69469 1.49560 1.21212 1.23347 0.89706 1.01410 0.87005 1.17128 0.85286 0.93337 0.89533 1.20790 0.91586 0.99079 0.98484 1.20694 0.96827 1.01602 0.94544 1.20750 0.97172 1.03652 0.95061 1.20677 0.92623 1.01843 0.98735 1.20925 0.97536 1.01797 0.93758 0.91553 0.89027 0.88432 0.83665 0.84635 0.90203 0.90326 0.89162 0.92387 0.92499 0.88172 0.87661 0.87462 0.87674 0.87500 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.32 10.70 55.49 0.59 -20.73 16 2 C 0.05 1.21 5.17 -17.48 -0.09 1.12 16 3 Si 0.92 19.02 29.58 -169.99 -5.03 13.99 16 4 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 7 C -0.36 -8.83 8.98 -14.93 -0.13 -8.97 16 8 H 0.10 2.34 6.56 -52.49 -0.34 1.99 16 9 N -0.40 -10.02 2.68 -58.98 -0.16 -10.17 16 10 C 0.47 11.23 7.59 -10.99 -0.08 11.15 16 11 O -0.57 -15.16 16.27 -14.10 -0.23 -15.39 16 12 C 0.07 1.48 4.52 36.01 0.16 1.64 16 13 O -0.33 -6.25 9.77 -47.44 -0.46 -6.71 16 14 C 0.49 7.70 7.68 34.26 0.26 7.97 16 15 O -0.51 -8.61 13.16 -19.30 -0.25 -8.87 16 16 C -0.18 -2.06 10.12 -37.85 -0.38 -2.45 16 17 C -0.05 -0.48 8.55 -36.10 -0.31 -0.79 16 18 C -0.13 -1.35 2.56 -90.20 -0.23 -1.58 16 19 H 0.13 1.75 5.11 -51.94 -0.27 1.48 16 20 C -0.15 -1.25 6.73 -25.17 -0.17 -1.42 16 21 C 0.04 0.37 7.63 37.93 0.29 0.66 16 22 O -0.38 -4.54 11.65 -35.23 -0.41 -4.95 16 23 C 0.06 0.68 7.15 37.93 0.27 0.95 16 24 C 0.24 5.84 2.49 -83.69 -0.21 5.63 16 25 C -0.08 -1.88 8.83 -39.37 -0.35 -2.23 16 26 C -0.12 -2.40 10.04 -39.61 -0.40 -2.79 16 27 C -0.15 -2.81 10.04 -39.53 -0.40 -3.21 16 28 C -0.12 -2.38 10.04 -39.61 -0.40 -2.78 16 29 C -0.12 -2.74 9.54 -39.37 -0.38 -3.11 16 30 H 0.27 6.66 8.32 -40.82 -0.34 6.32 16 31 H 0.09 1.75 7.55 -51.93 -0.39 1.36 16 32 H 0.10 1.92 8.12 -51.93 -0.42 1.50 16 33 H 0.15 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.51 7.73 -51.93 -0.40 0.11 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.52 7.86 -51.93 -0.41 0.11 16 40 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.11 2.52 8.06 -52.49 -0.42 2.10 16 42 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 45 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -30.73 382.99 -8.73 -39.46 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -6.02 Total: 7.81 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.54 Total: -0.21 kcal Atomic # 7 Polarization: -31.34 SS G_CDS: 0.44 Total: -30.90 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.36 Total: -35.92 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.73 -8.73 -39.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838046289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.815 kcal (2) G-P(sol) polarization free energy of solvation -30.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds