Wall clock time and date at job start Wed Apr 1 2020 03:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31424 * 1 3 3 Si 1.86793 * 120.00133 * 2 1 4 4 H 1.48504 * 109.47126 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47531 * 300.00135 * 3 2 1 6 6 H 1.48500 * 109.47344 * 60.00285 * 3 2 1 7 7 C 1.38891 * 119.99796 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99989 * 193.35698 * 7 2 1 9 9 N 1.37144 * 119.99995 * 13.35309 * 7 2 1 10 10 C 1.34770 * 120.00201 * 201.11454 * 9 7 2 11 11 O 1.21282 * 120.00242 * 183.19109 * 10 9 7 12 12 C 1.50703 * 120.00085 * 3.19431 * 10 9 7 13 13 O 1.45200 * 109.47226 * 179.97438 * 12 10 9 14 14 C 1.34797 * 116.99585 * 179.97438 * 13 12 10 15 15 O 1.21539 * 120.00553 * 0.02562 * 14 13 12 16 16 C 1.46956 * 119.99960 * 180.02562 * 14 13 12 17 17 C 1.33082 * 120.00256 * 187.36337 * 16 14 13 18 18 C 1.50705 * 120.00058 * 17.19594 * 17 16 14 19 19 H 1.09000 * 110.45157 * 8.23495 * 18 17 16 20 20 C 1.54505 * 110.51045 * 130.83606 * 18 17 16 21 21 C 1.54478 * 104.06141 * 118.64456 * 20 18 17 22 22 O 1.44426 * 104.80342 * 23.98198 * 21 20 18 23 23 C 1.44431 * 105.27325 * 319.48504 * 22 21 20 24 24 C 1.39789 * 119.99850 * 21.12006 * 9 7 2 25 25 C 1.38963 * 120.07644 * 249.16955 * 24 9 7 26 26 C 1.38080 * 119.92270 * 179.97438 * 25 24 9 27 27 C 1.38317 * 120.07735 * 359.97438 * 26 25 24 28 28 C 1.38307 * 120.15358 * 359.97438 * 27 26 25 29 29 C 1.38080 * 120.07917 * 0.02562 * 28 27 26 30 30 H 0.97000 * 119.99875 * 4.96252 * 1 2 3 31 31 H 1.09003 * 109.46831 * 300.00150 * 12 10 9 32 32 H 1.09002 * 109.47008 * 59.99608 * 12 10 9 33 33 H 1.07998 * 119.99564 * 7.36195 * 16 14 13 34 34 H 1.08001 * 120.00244 * 197.19513 * 17 16 14 35 35 H 1.08996 * 110.51118 * 237.28950 * 20 18 17 36 36 H 1.08997 * 110.51137 * 359.97438 * 20 18 17 37 37 H 1.09001 * 110.37146 * 142.80706 * 21 20 18 38 38 H 1.08998 * 110.37216 * 265.14452 * 21 20 18 39 39 H 1.09003 * 110.37303 * 281.68398 * 23 22 21 40 40 H 1.08995 * 110.37248 * 159.34780 * 23 22 21 41 41 H 1.07999 * 120.03696 * 359.94736 * 25 24 9 42 42 H 1.07994 * 119.96435 * 180.02562 * 26 25 24 43 43 H 1.08000 * 119.92078 * 179.72294 * 27 26 25 44 44 H 1.08005 * 119.95905 * 179.97438 * 28 27 26 45 45 H 1.08002 * 120.03723 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7083 1.3463 -0.0006 5 1 1.8896 2.3964 -1.2124 6 1 1.8896 2.3964 1.2125 7 6 2.0087 -1.2029 -0.0005 8 1 3.0667 -1.2156 0.2155 9 7 1.3507 -2.3744 -0.2754 10 6 1.8734 -3.5506 0.1241 11 8 1.3217 -4.5901 -0.1689 12 6 3.1435 -3.5741 0.9350 13 8 3.4981 -4.9489 1.2392 14 6 4.6177 -5.1461 1.9635 15 8 5.2792 -4.1950 2.3311 16 6 5.0386 -6.5111 2.3087 17 6 6.0572 -6.7023 3.1436 18 6 6.5280 -5.5766 4.0282 19 1 5.8426 -4.7314 3.9662 20 6 6.6637 -6.0575 5.4902 21 6 8.1616 -5.8605 5.8126 22 8 8.6051 -4.8372 4.8949 23 6 7.9598 -5.1459 3.6401 24 6 0.1379 -2.3484 -0.9700 25 6 -1.0447 -2.6781 -0.3189 26 6 -2.2410 -2.6510 -1.0080 27 6 -2.2632 -2.2956 -2.3445 28 6 -1.0882 -1.9658 -2.9954 29 6 0.1116 -1.9909 -2.3125 30 1 -0.4850 0.8369 -0.0727 31 1 3.9474 -3.1088 0.3646 32 1 2.9917 -3.0243 1.8639 33 1 4.5213 -7.3591 1.8849 34 1 6.5465 -7.6641 3.1873 35 1 6.0474 -5.4484 6.1514 36 1 6.3899 -7.1093 5.5733 37 1 8.2873 -5.5267 6.8426 38 1 8.7112 -6.7864 5.6431 39 1 8.4785 -5.9622 3.1374 40 1 7.9306 -4.2633 3.0013 41 1 -1.0281 -2.9557 0.7246 42 1 -3.1605 -2.9067 -0.5026 43 1 -3.1997 -2.2795 -2.8822 44 1 -1.1092 -1.6892 -4.0392 45 1 1.0287 -1.7328 -2.8213 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838046289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:16:22 Heat of formation + Delta-G solvation = -111.349982 kcal Electronic energy + Delta-G solvation = -29585.910587 eV Core-core repulsion = 25341.420942 eV Total energy + Delta-G solvation = -4244.489645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.78688 -41.13105 -40.26860 -39.05267 -37.63946 -36.66200 -35.37868 -33.67845 -32.12922 -31.58864 -31.31632 -29.91582 -29.01584 -26.94980 -25.15496 -23.79809 -23.31818 -23.14554 -22.09627 -21.26524 -20.82376 -19.71101 -18.76402 -17.99448 -17.77465 -17.41911 -17.25788 -17.15513 -16.62517 -16.32494 -16.25605 -16.10622 -15.77349 -15.27002 -15.08509 -14.99678 -14.58377 -14.20000 -14.11657 -13.84005 -13.80184 -13.64842 -13.37709 -13.27128 -12.91141 -12.82973 -12.77337 -12.48113 -12.25884 -12.22699 -12.06913 -11.99716 -11.96325 -11.81276 -11.30528 -10.98009 -10.76736 -10.62289 -10.33760 -10.16072 -9.57986 -9.30883 -8.18910 -6.12259 0.01033 0.72825 0.77894 1.33060 1.41582 1.48942 1.56928 1.74136 1.84592 2.25179 2.83216 2.99766 3.03580 3.24961 3.60023 3.70464 3.79163 3.95175 3.97459 4.11059 4.16576 4.18979 4.24035 4.28188 4.33413 4.36832 4.39281 4.49930 4.74018 4.77182 4.84310 4.87270 4.88120 5.03821 5.04854 5.06532 5.15343 5.20676 5.30729 5.34538 5.61397 5.62672 5.75519 5.78773 5.84792 5.96632 6.19954 6.48610 6.67534 6.97314 7.32124 7.74410 8.64316 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014536 B = 0.002595 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.773939 B =10788.288835 C =12169.505592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.013 3.987 3 Si 0.983 3.017 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.410 5.410 10 C 0.454 3.546 11 O -0.607 6.607 12 C 0.086 3.914 13 O -0.348 6.348 14 C 0.479 3.521 15 O -0.528 6.528 16 C -0.206 4.206 17 C -0.014 4.014 18 C -0.136 4.136 19 H 0.092 0.908 20 C -0.142 4.142 21 C 0.039 3.961 22 O -0.405 6.405 23 C 0.063 3.937 24 C 0.207 3.793 25 C -0.109 4.109 26 C -0.118 4.118 27 C -0.141 4.141 28 C -0.116 4.116 29 C -0.144 4.144 30 H 0.273 0.727 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.166 0.834 34 H 0.186 0.814 35 H 0.071 0.929 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.137 0.863 43 H 0.150 0.850 44 H 0.143 0.857 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.018 -10.515 5.456 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.193 4.193 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.505 4.505 8 H 0.127 0.873 9 N -0.127 5.127 10 C 0.244 3.756 11 O -0.494 6.494 12 C 0.010 3.990 13 O -0.263 6.263 14 C 0.328 3.672 15 O -0.420 6.420 16 C -0.224 4.224 17 C -0.032 4.032 18 C -0.155 4.155 19 H 0.110 0.890 20 C -0.180 4.180 21 C -0.037 4.037 22 O -0.324 6.324 23 C -0.014 4.014 24 C 0.116 3.884 25 C -0.129 4.129 26 C -0.136 4.136 27 C -0.158 4.158 28 C -0.134 4.134 29 C -0.164 4.164 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.184 0.816 34 H 0.203 0.797 35 H 0.090 0.910 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.101 0.899 42 H 0.155 0.845 43 H 0.168 0.832 44 H 0.161 0.839 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.901 -10.390 5.526 14.755 hybrid contribution 0.052 1.368 0.064 1.371 sum 8.953 -9.022 5.591 13.885 Atomic orbital electron populations 1.70076 1.06957 1.28837 1.43855 1.26062 0.96126 1.02421 0.94722 0.85024 0.78963 0.77499 0.77874 1.18325 1.20054 1.20516 1.20000 0.94410 0.83615 1.52458 0.87292 1.41394 1.18952 1.05696 1.46637 1.20191 0.88143 0.83521 0.83715 1.90564 1.64846 1.32960 1.60981 1.22302 0.95828 0.80339 1.00577 1.86623 1.42630 1.30560 1.66527 1.22588 0.77436 0.92390 0.74788 1.90758 1.54454 1.45353 1.51455 1.22179 1.01692 0.92001 1.06544 1.24135 0.90182 1.00623 0.88268 1.22342 0.99313 0.98607 0.95205 0.89033 1.23030 0.97458 1.03806 0.93682 1.23671 0.93308 0.92024 0.94695 1.89115 1.69888 1.51342 1.22065 1.23320 0.90087 1.01193 0.86797 1.17478 0.85437 0.94864 0.90575 1.20827 0.92972 1.01148 0.97925 1.21088 0.96667 1.00415 0.95438 1.21240 0.98683 1.01447 0.94476 1.21125 0.91740 1.00223 1.00327 1.21078 0.98796 1.03053 0.93451 0.91679 0.88392 0.88642 0.81607 0.79681 0.91034 0.87399 0.88210 0.89911 0.90016 0.90645 0.89903 0.84525 0.83223 0.83910 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -44.57 10.70 21.65 0.23 -44.34 16 2 C 0.01 0.65 5.17 84.91 0.44 1.09 16 3 Si 0.98 39.36 29.58 68.60 2.03 41.39 16 4 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 5 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 6 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.38 -19.15 8.98 84.02 0.75 -18.39 16 8 H 0.11 5.17 6.56 -2.91 -0.02 5.15 16 9 N -0.41 -21.33 2.68 -458.90 -1.23 -22.56 16 10 C 0.45 23.12 7.59 87.66 0.67 23.79 16 11 O -0.61 -33.93 16.27 15.76 0.26 -33.67 16 12 C 0.09 3.70 4.52 71.24 0.32 4.03 16 13 O -0.35 -13.87 9.77 -50.69 -0.50 -14.37 16 14 C 0.48 15.65 7.68 70.11 0.54 16.19 16 15 O -0.53 -18.80 13.16 19.71 0.26 -18.54 16 16 C -0.21 -4.43 10.12 23.40 0.24 -4.19 16 17 C -0.01 -0.22 8.55 24.53 0.21 -0.01 16 18 C -0.14 -2.75 2.56 -10.52 -0.03 -2.78 16 19 H 0.09 2.59 5.11 -2.50 -0.01 2.58 16 20 C -0.14 -2.07 6.73 31.61 0.21 -1.86 16 21 C 0.04 0.57 7.63 72.48 0.55 1.12 16 22 O -0.40 -9.42 11.65 -148.98 -1.74 -11.16 16 23 C 0.06 1.32 7.15 72.48 0.52 1.84 16 24 C 0.21 10.51 2.49 38.22 0.10 10.61 16 25 C -0.11 -5.30 8.83 22.41 0.20 -5.11 16 26 C -0.12 -4.68 10.04 22.25 0.22 -4.45 16 27 C -0.14 -4.97 10.04 22.30 0.22 -4.75 16 28 C -0.12 -4.39 10.04 22.25 0.22 -4.17 16 29 C -0.14 -6.64 9.54 22.40 0.21 -6.42 16 30 H 0.27 13.43 8.32 -92.71 -0.77 12.66 16 31 H 0.10 3.98 7.55 -2.39 -0.02 3.96 16 32 H 0.10 4.04 8.12 -2.39 -0.02 4.03 16 33 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 34 H 0.19 1.12 8.06 -2.91 -0.02 1.10 16 35 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 0.95 7.73 -2.39 -0.02 0.93 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.08 1.29 7.86 -2.39 -0.02 1.28 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.08 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 43 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 44 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 45 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 Total: -1.00 -71.32 382.99 5.92 -65.40 By element: Atomic # 1 Polarization: 30.30 SS G_CDS: 1.00 Total: 31.30 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 5.60 Total: 6.54 kcal Atomic # 7 Polarization: -65.90 SS G_CDS: -1.00 Total: -66.90 kcal Atomic # 8 Polarization: -76.02 SS G_CDS: -1.72 Total: -77.73 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -71.32 5.92 -65.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838046289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.950 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds