Wall clock time and date at job start Wed Apr 1 2020 03:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48503 * 109.47143 * 275.00273 * 3 2 1 5 5 H 1.48511 * 109.47191 * 34.99825 * 3 2 1 6 6 H 1.48498 * 109.47311 * 154.99850 * 3 2 1 7 7 C 1.39906 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00110 * 142.53651 * 7 2 1 9 9 C 1.41155 * 119.99834 * 322.52944 * 7 2 1 10 10 C 1.40870 * 120.16311 * 173.35599 * 9 7 2 11 11 C 1.36378 * 119.82651 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.16722 * 0.02562 * 11 10 9 13 13 N 1.39246 * 119.83191 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99792 * 36.16583 * 13 12 11 15 15 O 1.21274 * 120.00230 * 355.35590 * 14 13 12 16 16 C 1.50702 * 119.99360 * 175.35059 * 14 13 12 17 17 O 1.45202 * 109.46426 * 180.02562 * 16 14 13 18 18 C 1.34803 * 116.99607 * 180.02562 * 17 16 14 19 19 O 1.21528 * 120.00283 * 359.97438 * 18 17 16 20 20 C 1.46952 * 119.99918 * 179.97438 * 18 17 16 21 21 C 1.33080 * 120.00446 * 187.69654 * 20 18 17 22 22 C 1.50704 * 119.99618 * 16.38405 * 21 20 18 23 23 H 1.09010 * 110.75381 * 12.43879 * 22 21 20 24 24 C 1.55299 * 111.02433 * 136.03889 * 22 21 20 25 25 C 1.54945 * 100.94485 * 152.40359 * 24 22 21 26 26 O 1.43648 * 105.13299 * 323.55181 * 25 24 22 27 27 C 1.43237 * 109.97263 * 24.43268 * 26 25 24 28 28 C 1.39480 * 120.33892 * 0.25025 * 12 11 10 29 29 C 1.36380 * 120.16447 * 359.48717 * 28 12 11 30 30 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.08679 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91261 * 180.02562 * 11 10 9 33 33 H 0.96996 * 119.99995 * 216.17135 * 13 12 11 34 34 H 1.08996 * 109.47060 * 60.00368 * 16 14 13 35 35 H 1.08997 * 109.47327 * 299.99927 * 16 14 13 36 36 H 1.08005 * 120.00117 * 7.69614 * 20 18 17 37 37 H 1.07992 * 120.00902 * 196.38444 * 21 20 18 38 38 H 1.09005 * 111.12292 * 270.31830 * 24 22 21 39 39 H 1.09000 * 111.12527 * 34.48158 * 24 22 21 40 40 H 1.09000 * 110.31023 * 204.63806 * 25 24 22 41 41 H 1.08999 * 110.31329 * 82.47114 * 25 24 22 42 42 H 1.09001 * 109.83028 * 238.77135 * 27 26 25 43 43 H 1.08993 * 109.90811 * 117.83867 * 27 26 25 44 44 H 1.07994 * 119.91866 * 179.74986 * 28 12 11 45 45 H 1.08004 * 120.08747 * 180.25331 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3844 2.1075 -1.3948 5 1 1.4968 2.6199 0.8031 6 1 3.5890 1.4121 0.5917 7 6 2.0083 -1.2116 -0.0005 8 1 2.9212 -1.3078 -0.5695 9 6 1.5209 -2.3082 0.7427 10 6 2.1420 -3.5681 0.6352 11 6 1.6651 -4.6231 1.3560 12 6 0.5652 -4.4571 2.1975 13 7 0.0838 -5.5392 2.9298 14 6 0.9426 -6.4483 3.4323 15 8 2.1256 -6.3712 3.1765 16 6 0.4327 -7.5605 4.3122 17 8 1.5437 -8.4003 4.7232 18 6 1.2560 -9.4491 5.5196 19 8 0.1082 -9.6557 5.8615 20 6 2.3303 -10.3427 5.9745 21 6 2.0322 -11.4613 6.6310 22 6 0.6275 -12.0058 6.5927 23 1 0.0399 -11.5050 5.8231 24 6 0.6316 -13.5430 6.3719 25 6 -0.6954 -13.9433 7.0643 26 8 -0.8025 -13.0725 8.2017 27 6 -0.0504 -11.8750 7.9736 28 6 -0.0585 -3.2142 2.3048 29 6 0.4102 -2.1486 1.5943 30 1 -0.4850 0.8400 0.0004 31 1 2.9929 -3.6984 -0.0169 32 1 2.1405 -5.5895 1.2750 33 1 -0.8695 -5.6387 3.0782 34 1 -0.2904 -8.1592 3.7586 35 1 -0.0466 -7.1354 5.1940 36 1 3.3618 -10.0918 5.7760 37 1 2.7967 -11.9788 7.1912 38 1 0.6098 -13.7874 5.3099 39 1 1.4866 -14.0081 6.8627 40 1 -0.6551 -14.9837 7.3869 41 1 -1.5365 -13.7883 6.3886 42 1 0.7078 -11.7612 8.7484 43 1 -0.7161 -11.0120 7.9784 44 1 -0.9122 -3.0943 2.9553 45 1 -0.0712 -1.1857 1.6815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838051168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:16 Heat of formation + Delta-G solvation = -114.760244 kcal Electronic energy + Delta-G solvation = -28170.069655 eV Core-core repulsion = 23925.432130 eV Total energy + Delta-G solvation = -4244.637525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91321 -39.82773 -39.37477 -37.40516 -36.64946 -34.76805 -34.54014 -33.17429 -31.57678 -30.00855 -29.52569 -29.27125 -28.20003 -25.08750 -24.15552 -22.80986 -21.90566 -21.61942 -20.79674 -20.17187 -19.72157 -18.05205 -17.55098 -17.29897 -17.07197 -16.65902 -16.52909 -16.07319 -15.43367 -15.25053 -15.08301 -14.74754 -14.55463 -14.09378 -13.85347 -13.63291 -13.42290 -13.35553 -12.86891 -12.74066 -12.64425 -12.19297 -12.12382 -12.04453 -12.00094 -11.69307 -11.51529 -11.39377 -11.14669 -11.03933 -10.90840 -10.59869 -10.35431 -10.25334 -9.97555 -9.72086 -9.71754 -9.55780 -9.13268 -8.65757 -7.57062 -7.26623 -7.02437 -4.30173 0.62620 2.24936 2.50142 2.56402 2.87248 3.00018 3.05725 3.10579 3.30970 3.49849 3.70809 3.81165 4.07739 4.16444 4.38633 4.47927 4.58190 4.71682 4.77085 4.84679 4.91821 4.98534 5.01307 5.03826 5.26486 5.33242 5.40711 5.56414 5.62359 5.66526 5.72075 5.85825 6.17750 6.22555 6.43174 6.61371 6.74140 6.89871 6.92341 7.12851 7.27043 7.46663 7.54474 7.67733 7.87230 7.99480 8.19773 8.24756 8.50448 8.66732 8.79381 8.96475 9.85478 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.038725 B = 0.001540 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.882577 B =18172.728978 C =18464.966508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.755 5.755 2 C 0.089 3.911 3 Si 0.898 3.102 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.255 1.255 7 C -0.456 4.456 8 H 0.084 0.916 9 C 0.106 3.894 10 C -0.233 4.233 11 C -0.062 4.062 12 C -0.037 4.037 13 N -0.640 5.640 14 C 0.496 3.504 15 O -0.513 6.513 16 C 0.053 3.947 17 O -0.324 6.324 18 C 0.492 3.508 19 O -0.508 6.508 20 C -0.186 4.186 21 C -0.043 4.043 22 C -0.123 4.123 23 H 0.123 0.877 24 C -0.150 4.150 25 C 0.052 3.948 26 O -0.386 6.386 27 C 0.068 3.932 28 C -0.097 4.097 29 C -0.188 4.188 30 H 0.285 0.715 31 H 0.094 0.906 32 H 0.104 0.896 33 H 0.396 0.604 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.149 0.851 37 H 0.141 0.859 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.284 -20.464 11.996 23.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C -0.135 4.135 3 Si 0.721 3.279 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.179 1.179 7 C -0.482 4.482 8 H 0.102 0.898 9 C 0.103 3.897 10 C -0.253 4.253 11 C -0.082 4.082 12 C -0.128 4.128 13 N -0.285 5.285 14 C 0.281 3.719 15 O -0.388 6.388 16 C -0.025 4.025 17 O -0.238 6.238 18 C 0.339 3.661 19 O -0.400 6.400 20 C -0.205 4.205 21 C -0.061 4.061 22 C -0.141 4.141 23 H 0.141 0.859 24 C -0.188 4.188 25 C -0.024 4.024 26 O -0.305 6.305 27 C -0.008 4.008 28 C -0.117 4.117 29 C -0.207 4.207 30 H 0.096 0.904 31 H 0.112 0.888 32 H 0.122 0.878 33 H 0.229 0.771 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.114 -20.344 12.068 23.680 hybrid contribution -0.165 0.856 -0.135 0.882 sum -1.278 -19.488 11.933 22.887 Atomic orbital electron populations 1.69974 1.08374 1.30164 1.29154 1.26064 0.94279 1.02035 0.91097 0.86471 0.81722 0.80389 0.79343 1.19287 1.19733 1.17893 1.19596 1.08160 0.94876 1.25574 0.89839 1.17619 0.90363 0.91373 0.90352 1.20483 1.04759 0.93298 1.06757 1.20328 0.95377 0.98320 0.94149 1.17001 1.04368 0.86619 1.04833 1.42706 1.08937 1.24480 1.52357 1.19901 0.87121 0.83403 0.81514 1.90725 1.16054 1.73508 1.58516 1.22740 0.88039 0.91820 0.99904 1.86676 1.38481 1.37746 1.60945 1.21690 0.88694 0.80150 0.75540 1.90777 1.22563 1.71366 1.55250 1.22059 0.98874 0.96103 1.03455 1.23687 0.97550 0.93503 0.91377 1.22489 0.94766 0.96008 1.00807 0.85921 1.23381 0.98790 0.94338 1.02290 1.23374 0.96470 0.94740 0.87866 1.88398 1.72334 1.29986 1.39808 1.23036 0.94852 0.88172 0.94775 1.20162 0.99484 0.91864 1.00176 1.20927 1.00782 0.97991 1.01040 0.90382 0.88820 0.87756 0.77102 0.88466 0.88278 0.83341 0.84170 0.89587 0.90098 0.89613 0.91983 0.91451 0.90366 0.89304 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -18.37 11.17 55.55 0.62 -17.75 16 2 C 0.09 2.14 4.87 -17.34 -0.08 2.05 16 3 Si 0.90 17.73 29.68 -169.99 -5.05 12.68 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.46 -11.85 8.94 -37.85 -0.34 -12.19 16 8 H 0.08 2.10 8.05 -52.49 -0.42 1.68 16 9 C 0.11 2.81 5.70 -106.80 -0.61 2.20 16 10 C -0.23 -5.93 9.74 -39.26 -0.38 -6.31 16 11 C -0.06 -1.50 8.61 -39.79 -0.34 -1.84 16 12 C -0.04 -0.82 6.29 -83.57 -0.53 -1.34 16 13 N -0.64 -11.13 5.30 -9.74 -0.05 -11.19 16 14 C 0.50 8.65 7.74 -10.98 -0.08 8.56 16 15 O -0.51 -11.23 13.97 -14.10 -0.20 -11.43 16 16 C 0.05 0.68 5.96 36.01 0.21 0.89 16 17 O -0.32 -4.49 9.77 -47.46 -0.46 -4.96 16 18 C 0.49 5.67 7.67 34.26 0.26 5.93 16 19 O -0.51 -6.26 12.89 -19.29 -0.25 -6.51 16 20 C -0.19 -1.53 10.12 -37.85 -0.38 -1.92 16 21 C -0.04 -0.28 8.76 -36.10 -0.32 -0.59 16 22 C -0.12 -0.95 2.33 -89.82 -0.21 -1.16 16 23 H 0.12 1.20 5.34 -51.92 -0.28 0.92 16 24 C -0.15 -0.88 6.61 -24.49 -0.16 -1.04 16 25 C 0.05 0.36 7.78 38.18 0.30 0.66 16 26 O -0.39 -3.86 11.36 -35.23 -0.40 -4.26 16 27 C 0.07 0.60 7.28 37.88 0.28 0.87 16 28 C -0.10 -2.20 9.90 -39.79 -0.39 -2.59 16 29 C -0.19 -4.77 8.88 -39.25 -0.35 -5.12 16 30 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 31 H 0.09 2.26 8.06 -52.49 -0.42 1.84 16 32 H 0.10 2.50 6.28 -52.49 -0.33 2.17 16 33 H 0.40 5.27 8.82 -40.82 -0.36 4.91 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 37 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.37 8.04 -51.93 -0.42 -0.04 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.51 7.81 -51.93 -0.41 0.11 16 43 H 0.08 0.78 7.90 -51.93 -0.41 0.37 16 44 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.12 3.13 5.72 -52.48 -0.30 2.83 16 LS Contribution 381.82 15.07 5.75 5.75 Total: -1.00 -31.94 381.82 -9.02 -40.96 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.86 Total: 9.62 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -3.13 Total: -12.93 kcal Atomic # 7 Polarization: -29.51 SS G_CDS: 0.57 Total: -28.94 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -1.31 Total: -27.15 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.05 Total: 12.68 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.94 -9.02 -40.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838051168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.799 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds