Wall clock time and date at job start Wed Apr 1 2020 03:07:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86797 * 119.99856 * 2 1 4 4 H 1.48503 * 109.47143 * 275.00273 * 3 2 1 5 5 H 1.48511 * 109.47191 * 34.99825 * 3 2 1 6 6 H 1.48498 * 109.47311 * 154.99850 * 3 2 1 7 7 C 1.39906 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00110 * 142.53651 * 7 2 1 9 9 C 1.41155 * 119.99834 * 322.52944 * 7 2 1 10 10 C 1.40870 * 120.16311 * 173.35599 * 9 7 2 11 11 C 1.36378 * 119.82651 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.16722 * 0.02562 * 11 10 9 13 13 N 1.39246 * 119.83191 * 179.97438 * 12 11 10 14 14 C 1.34782 * 119.99792 * 36.16583 * 13 12 11 15 15 O 1.21274 * 120.00230 * 355.35590 * 14 13 12 16 16 C 1.50702 * 119.99360 * 175.35059 * 14 13 12 17 17 O 1.45202 * 109.46426 * 180.02562 * 16 14 13 18 18 C 1.34803 * 116.99607 * 180.02562 * 17 16 14 19 19 O 1.21528 * 120.00283 * 359.97438 * 18 17 16 20 20 C 1.46952 * 119.99918 * 179.97438 * 18 17 16 21 21 C 1.33080 * 120.00446 * 187.69654 * 20 18 17 22 22 C 1.50704 * 119.99618 * 16.38405 * 21 20 18 23 23 H 1.09010 * 110.75381 * 12.43879 * 22 21 20 24 24 C 1.55299 * 111.02433 * 136.03889 * 22 21 20 25 25 C 1.54945 * 100.94485 * 152.40359 * 24 22 21 26 26 O 1.43648 * 105.13299 * 323.55181 * 25 24 22 27 27 C 1.43237 * 109.97263 * 24.43268 * 26 25 24 28 28 C 1.39480 * 120.33892 * 0.25025 * 12 11 10 29 29 C 1.36380 * 120.16447 * 359.48717 * 28 12 11 30 30 H 0.97000 * 120.00271 * 359.97438 * 1 2 3 31 31 H 1.07996 * 120.08679 * 359.97438 * 10 9 7 32 32 H 1.08001 * 119.91261 * 180.02562 * 11 10 9 33 33 H 0.96996 * 119.99995 * 216.17135 * 13 12 11 34 34 H 1.08996 * 109.47060 * 60.00368 * 16 14 13 35 35 H 1.08997 * 109.47327 * 299.99927 * 16 14 13 36 36 H 1.08005 * 120.00117 * 7.69614 * 20 18 17 37 37 H 1.07992 * 120.00902 * 196.38444 * 21 20 18 38 38 H 1.09005 * 111.12292 * 270.31830 * 24 22 21 39 39 H 1.09000 * 111.12527 * 34.48158 * 24 22 21 40 40 H 1.09000 * 110.31023 * 204.63806 * 25 24 22 41 41 H 1.08999 * 110.31329 * 82.47114 * 25 24 22 42 42 H 1.09001 * 109.83028 * 238.77135 * 27 26 25 43 43 H 1.08993 * 109.90811 * 117.83867 * 27 26 25 44 44 H 1.07994 * 119.91866 * 179.74986 * 28 12 11 45 45 H 1.08004 * 120.08747 * 180.25331 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6177 0.0000 4 1 2.3844 2.1075 -1.3948 5 1 1.4968 2.6199 0.8031 6 1 3.5890 1.4121 0.5917 7 6 2.0083 -1.2116 -0.0005 8 1 2.9212 -1.3078 -0.5695 9 6 1.5209 -2.3082 0.7427 10 6 2.1420 -3.5681 0.6352 11 6 1.6651 -4.6231 1.3560 12 6 0.5652 -4.4571 2.1975 13 7 0.0838 -5.5392 2.9298 14 6 0.9426 -6.4483 3.4323 15 8 2.1256 -6.3712 3.1765 16 6 0.4327 -7.5605 4.3122 17 8 1.5437 -8.4003 4.7232 18 6 1.2560 -9.4491 5.5196 19 8 0.1082 -9.6557 5.8615 20 6 2.3303 -10.3427 5.9745 21 6 2.0322 -11.4613 6.6310 22 6 0.6275 -12.0058 6.5927 23 1 0.0399 -11.5050 5.8231 24 6 0.6316 -13.5430 6.3719 25 6 -0.6954 -13.9433 7.0643 26 8 -0.8025 -13.0725 8.2017 27 6 -0.0504 -11.8750 7.9736 28 6 -0.0585 -3.2142 2.3048 29 6 0.4102 -2.1486 1.5943 30 1 -0.4850 0.8400 0.0004 31 1 2.9929 -3.6984 -0.0169 32 1 2.1405 -5.5895 1.2750 33 1 -0.8695 -5.6387 3.0782 34 1 -0.2904 -8.1592 3.7586 35 1 -0.0466 -7.1354 5.1940 36 1 3.3618 -10.0918 5.7760 37 1 2.7967 -11.9788 7.1912 38 1 0.6098 -13.7874 5.3099 39 1 1.4866 -14.0081 6.8627 40 1 -0.6551 -14.9837 7.3869 41 1 -1.5365 -13.7883 6.3886 42 1 0.7078 -11.7612 8.7484 43 1 -0.7161 -11.0120 7.9784 44 1 -0.9122 -3.0943 2.9553 45 1 -0.0712 -1.1857 1.6815 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838051168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:15 Heat of formation + Delta-G solvation = -133.368897 kcal Electronic energy + Delta-G solvation = -28170.876587 eV Core-core repulsion = 23925.432130 eV Total energy + Delta-G solvation = -4245.444456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.84112 -41.06604 -40.27600 -39.06899 -37.70859 -36.25870 -35.42612 -34.90390 -32.20103 -31.57964 -31.27566 -30.14231 -29.46596 -26.70952 -25.08308 -23.54613 -23.32027 -22.63821 -22.35211 -21.40142 -20.81948 -19.38653 -18.95915 -18.59586 -17.90635 -17.69516 -17.43083 -17.36691 -16.99707 -16.24940 -16.19030 -15.79173 -15.72302 -15.17348 -15.15463 -14.95617 -14.50451 -14.19792 -14.11402 -13.99178 -13.95092 -13.83081 -13.60451 -13.22816 -12.85930 -12.80321 -12.70720 -12.55292 -12.36623 -12.28368 -12.08028 -11.94513 -11.87458 -11.55070 -11.25772 -11.09111 -10.79672 -10.59195 -10.44198 -10.33529 -9.48180 -9.10696 -8.83158 -6.22843 -0.01935 0.78863 1.15626 1.29471 1.34027 1.40826 1.53019 1.71952 1.80386 2.16601 2.47899 2.57765 2.92791 3.50977 3.57937 3.61172 3.72384 3.80018 3.98293 4.02920 4.05088 4.22354 4.26379 4.33484 4.39724 4.48970 4.51702 4.74519 4.84786 4.88716 4.91995 4.96941 5.05836 5.06510 5.11762 5.17142 5.19791 5.28372 5.43700 5.50961 5.62459 5.88518 6.01066 6.02301 6.09185 6.31605 6.57126 6.61143 6.69434 6.86734 6.97587 7.31297 8.08773 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.038725 B = 0.001540 C = 0.001516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.882577 B =18172.728978 C =18464.966508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.054 3.946 3 Si 0.973 3.027 4 H -0.256 1.256 5 H -0.258 1.258 6 H -0.263 1.263 7 C -0.495 4.495 8 H 0.076 0.924 9 C 0.076 3.924 10 C -0.256 4.256 11 C -0.073 4.073 12 C -0.026 4.026 13 N -0.632 5.632 14 C 0.497 3.503 15 O -0.561 6.561 16 C 0.062 3.938 17 O -0.348 6.348 18 C 0.488 3.512 19 O -0.522 6.522 20 C -0.206 4.206 21 C -0.016 4.016 22 C -0.127 4.127 23 H 0.100 0.900 24 C -0.141 4.141 25 C 0.043 3.957 26 O -0.410 6.410 27 C 0.067 3.933 28 C -0.094 4.094 29 C -0.209 4.209 30 H 0.298 0.702 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.419 0.581 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.163 0.837 37 H 0.178 0.822 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.058 0.942 42 H 0.081 0.919 43 H 0.058 0.942 44 H 0.124 0.876 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.503 -21.615 13.535 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.401 5.401 2 C -0.168 4.168 3 Si 0.793 3.207 4 H -0.180 1.180 5 H -0.182 1.182 6 H -0.187 1.187 7 C -0.521 4.521 8 H 0.095 0.905 9 C 0.074 3.926 10 C -0.276 4.276 11 C -0.093 4.093 12 C -0.118 4.118 13 N -0.279 5.279 14 C 0.285 3.715 15 O -0.439 6.439 16 C -0.015 4.015 17 O -0.264 6.264 18 C 0.337 3.663 19 O -0.414 6.414 20 C -0.225 4.225 21 C -0.034 4.034 22 C -0.145 4.145 23 H 0.118 0.882 24 C -0.178 4.178 25 C -0.033 4.033 26 O -0.330 6.330 27 C -0.009 4.009 28 C -0.114 4.114 29 C -0.229 4.229 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.256 0.744 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.181 0.819 37 H 0.196 0.804 38 H 0.114 0.886 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.142 0.858 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.388 -21.526 13.614 25.508 hybrid contribution -0.196 1.027 -0.551 1.182 sum -1.584 -20.499 13.062 24.359 Atomic orbital electron populations 1.69944 1.09559 1.31872 1.28769 1.26849 0.95013 1.04766 0.90155 0.85344 0.79677 0.75803 0.79909 1.18042 1.18226 1.18693 1.19803 1.08693 0.96491 1.27095 0.90548 1.17948 0.91348 0.91930 0.91410 1.20600 1.05389 0.93802 1.07788 1.20441 0.96331 0.97843 0.94716 1.17053 1.03084 0.87945 1.03767 1.42577 1.10371 1.23248 1.51661 1.20672 0.86336 0.83652 0.80886 1.90708 1.18297 1.74730 1.60177 1.22655 0.87948 0.90761 1.00106 1.86671 1.39146 1.38684 1.61861 1.22296 0.89434 0.79743 0.74844 1.90783 1.23285 1.71558 1.55801 1.22171 0.98593 0.96590 1.05139 1.24012 0.97499 0.92396 0.89457 1.22443 0.95182 0.97430 0.99458 0.88169 1.23378 0.98789 0.92616 1.03038 1.23580 0.97167 0.95215 0.87320 1.88371 1.72850 1.30587 1.41173 1.23023 0.94733 0.87339 0.95844 1.20440 1.00086 0.91150 0.99710 1.20978 1.01140 0.98697 1.02098 0.89063 0.89112 0.87974 0.74380 0.85788 0.85913 0.81945 0.80441 0.88596 0.88095 0.87857 0.92370 0.90113 0.92398 0.85849 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -38.21 11.17 21.82 0.24 -37.97 16 2 C 0.05 2.63 4.87 85.24 0.41 3.05 16 3 Si 0.97 36.42 29.68 68.60 2.04 38.46 16 4 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 5 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 7 C -0.49 -26.75 8.94 23.39 0.21 -26.54 16 8 H 0.08 4.06 8.05 -2.91 -0.02 4.04 16 9 C 0.08 4.22 5.70 -21.27 -0.12 4.10 16 10 C -0.26 -13.63 9.74 22.48 0.22 -13.41 16 11 C -0.07 -3.65 8.61 22.13 0.19 -3.46 16 12 C -0.03 -1.14 6.29 38.56 0.24 -0.90 16 13 N -0.63 -21.05 5.30 -303.11 -1.61 -22.65 16 14 C 0.50 16.86 7.74 87.66 0.68 17.54 16 15 O -0.56 -24.76 13.97 15.79 0.22 -24.54 16 16 C 0.06 1.49 5.96 71.24 0.42 1.91 16 17 O -0.35 -9.32 9.77 -50.76 -0.50 -9.81 16 18 C 0.49 10.68 7.67 70.10 0.54 11.21 16 19 O -0.52 -12.33 12.89 19.74 0.25 -12.08 16 20 C -0.21 -2.99 10.12 23.40 0.24 -2.76 16 21 C -0.02 -0.16 8.76 24.53 0.21 0.06 16 22 C -0.13 -1.71 2.33 -10.28 -0.02 -1.74 16 23 H 0.10 1.86 5.34 -2.38 -0.01 1.85 16 24 C -0.14 -1.26 6.61 32.05 0.21 -1.05 16 25 C 0.04 0.53 7.78 72.65 0.56 1.09 16 26 O -0.41 -7.73 11.36 -148.98 -1.69 -9.42 16 27 C 0.07 1.10 7.28 72.45 0.53 1.62 16 28 C -0.09 -4.22 9.90 22.14 0.22 -4.00 16 29 C -0.21 -10.85 8.88 22.48 0.20 -10.65 16 30 H 0.30 12.80 8.30 -92.71 -0.77 12.03 16 31 H 0.09 4.68 8.06 -2.91 -0.02 4.66 16 32 H 0.10 5.06 6.28 -2.91 -0.02 5.04 16 33 H 0.42 10.08 8.82 -92.71 -0.82 9.26 16 34 H 0.12 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 37 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 38 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.10 0.53 8.04 -2.39 -0.02 0.51 16 40 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.08 1.07 7.81 -2.39 -0.02 1.05 16 43 H 0.06 1.16 7.90 -2.39 -0.02 1.14 16 44 H 0.12 4.59 8.06 -2.91 -0.02 4.57 16 45 H 0.12 6.02 5.72 -2.91 -0.02 6.00 16 Total: -1.00 -72.73 381.82 4.12 -68.61 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.22 Total: 33.32 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 4.95 Total: -23.90 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -1.36 Total: -60.62 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -1.71 Total: -55.86 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.04 Total: 38.46 kcal Total: -72.73 4.12 -68.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838051168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.758 kcal (2) G-P(sol) polarization free energy of solvation -72.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds