Wall clock time and date at job start Wed Apr 1 2020 03:52:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30773 * 126.36272 * 2 1
4 4 N 1.28422 * 110.64071 * 179.97438 * 3 2 1
5 5 N 1.28941 * 110.20543 * 0.02562 * 4 3 2
6 6 N 1.35056 * 126.36952 * 179.97438 * 2 1 3
7 7 C 1.40168 * 127.38375 * 359.75785 * 6 2 1
8 8 C 1.35366 * 120.00197 * 173.86817 * 7 6 2
9 9 C 1.47024 * 119.99889 * 173.56206 * 8 7 6
10 10 C 1.39931 * 120.15050 * 326.46852 * 9 8 7
11 11 C 1.37784 * 119.84652 * 179.74399 * 10 9 8
12 12 C 1.38674 * 120.15254 * 0.53507 * 11 10 9
13 13 F 1.35104 * 119.85378 * 179.69809 * 12 11 10
14 14 C 1.38685 * 120.30045 * 359.71652 * 12 11 10
15 15 C 1.37798 * 120.14722 * 0.02784 * 14 12 11
16 16 C 1.46840 * 120.00180 * 353.87313 * 7 6 2
17 17 O 1.21672 * 119.99793 * 288.46730 * 16 7 6
18 18 N 1.34779 * 120.00442 * 108.46172 * 16 7 6
19 19 C 1.46501 * 119.99666 * 4.37281 * 18 16 7
20 20 C 1.46496 * 120.00207 * 184.36896 * 18 16 7
21 21 C 1.50706 * 109.46962 * 90.00216 * 20 18 16
22 22 H 1.07999 * 119.99621 * 359.97438 * 21 20 18
23 23 C 1.37872 * 119.99995 * 179.97438 * 21 20 18
24 24 N 1.31522 * 120.00048 * 0.02562 * 23 21 20
25 25 Si 1.86798 * 120.00008 * 179.97438 * 23 21 20
26 26 H 1.48498 * 109.47204 * 0.02562 * 25 23 21
27 27 H 1.48500 * 109.47167 * 120.00376 * 25 23 21
28 28 H 1.48503 * 109.47421 * 240.00130 * 25 23 21
29 29 H 1.09002 * 109.46901 * 270.89028 * 1 2 3
30 30 H 1.08996 * 109.47327 * 30.89365 * 1 2 3
31 31 H 1.09001 * 109.46706 * 150.89736 * 1 2 3
32 32 H 1.07997 * 119.99821 * 353.56327 * 8 7 6
33 33 H 1.08002 * 120.06718 * 359.97438 * 10 9 8
34 34 H 1.07999 * 119.92356 * 180.27325 * 11 10 9
35 35 H 1.07992 * 119.92836 * 179.97438 * 14 12 11
36 36 H 1.07996 * 120.07548 * 180.02562 * 15 14 12
37 37 H 1.09003 * 109.46952 * 94.16958 * 19 18 16
38 38 H 1.08997 * 109.46720 * 214.16923 * 19 18 16
39 39 H 1.09003 * 109.47155 * 334.17434 * 19 18 16
40 40 H 1.09000 * 109.47167 * 210.00388 * 20 18 16
41 41 H 1.09003 * 109.47284 * 330.00451 * 20 18 16
42 42 H 0.96998 * 119.99912 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2823 1.0531 0.0000
4 7 3.5185 0.7051 0.0005
5 7 3.6193 -0.5804 0.0004
6 7 2.3079 -1.0875 0.0005
7 6 1.9157 -2.4332 0.0058
8 6 2.8450 -3.4095 -0.1197
9 6 2.4545 -4.8193 0.0273
10 6 1.4379 -5.1776 0.9197
11 6 1.0733 -6.5001 1.0486
12 6 1.7189 -7.4763 0.3047
13 9 1.3607 -8.7719 0.4404
14 6 2.7308 -7.1287 -0.5776
15 6 3.1017 -5.8093 -0.7202
16 6 0.4969 -2.7839 0.1474
17 8 -0.0635 -2.6322 1.2167
18 7 -0.1847 -3.2739 -0.9071
19 6 0.5117 -3.5467 -2.1667
20 6 -1.6220 -3.5338 -0.7935
21 6 -2.3887 -2.2993 -1.1926
22 1 -1.8584 -1.4100 -1.4997
23 6 -3.7672 -2.3052 -1.1658
24 7 -4.4130 -3.3880 -0.7914
25 14 -4.7175 -0.7748 -1.6598
26 1 -3.7643 0.2998 -2.0365
27 1 -5.5928 -1.0879 -2.8179
28 1 -5.5512 -0.3197 -0.5182
29 1 -0.3633 0.0160 1.0276
30 1 -0.3634 0.8818 -0.5276
31 1 -0.3633 -0.8980 -0.4998
32 1 3.8731 -3.1528 -0.3278
33 1 0.9378 -4.4188 1.5032
34 1 0.2859 -6.7775 1.7337
35 1 3.2297 -7.8939 -1.1537
36 1 3.8896 -5.5399 -1.4080
37 1 0.8179 -4.5925 -2.1936
38 1 -0.1567 -3.3421 -3.0031
39 1 1.3923 -2.9084 -2.2407
40 1 -1.8950 -4.3594 -1.4508
41 1 -1.8639 -3.7944 0.2369
42 1 -5.3828 -3.3920 -0.7721
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000843418990.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:52:14
Heat of formation + Delta-G solvation = 98.030982 kcal
Electronic energy + Delta-G solvation = -30935.075199 eV
Core-core repulsion = 26640.790192 eV
Total energy + Delta-G solvation = -4294.285008 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.134 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-49.03225 -43.18136 -40.42843 -38.72672 -36.00021 -35.31457 -33.66003 -32.87284
-32.52475 -31.37819 -29.52597 -28.40248 -28.00267 -26.36020 -25.17881 -23.72268
-23.17790 -22.78177 -21.83108 -20.78191 -19.29774 -17.85899 -17.52604 -16.93677
-16.84638 -16.46634 -16.13697 -15.88840 -15.70905 -15.10562 -15.04996 -14.70015
-14.46250 -14.05673 -13.76482 -13.58389 -13.35674 -13.00540 -12.95857 -12.76457
-12.69433 -12.53618 -12.39699 -12.18906 -12.15726 -12.08374 -11.81969 -11.44747
-11.11883 -11.06509 -10.96039 -10.81785 -10.37443 -10.08296 -9.90531 -9.74531
-9.60865 -9.31575 -8.65274 -8.25002 -8.08594 -6.27010 -4.34427 0.00719
1.00412 1.06994 1.50482 1.91232 2.30929 2.84829 3.16945 3.25840
3.26675 3.35811 3.43994 3.95138 4.07439 4.20888 4.32173 4.46194
4.53210 4.60620 4.71065 4.86287 5.04521 5.08909 5.11958 5.33053
5.39353 5.49905 5.65410 5.65854 5.68091 5.70729 5.76846 5.81648
5.92160 5.95890 6.07242 6.15505 6.23575 6.42085 6.65506 6.66596
7.03426 7.17212 7.65818 7.85113 7.92339 8.31639 8.42274 8.68924
9.32395 10.80899
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.007790 B = 0.005444 C = 0.003444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3593.688899 B = 5142.361390 C = 8127.748035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.100 4.100
2 C 0.274 3.726
3 N -0.335 5.335
4 N -0.035 5.035
5 N -0.092 5.092
6 N -0.319 5.319
7 C 0.063 3.937
8 C -0.052 4.052
9 C -0.082 4.082
10 C -0.073 4.073
11 C -0.144 4.144
12 C 0.111 3.889
13 F -0.138 7.138
14 C -0.158 4.158
15 C -0.064 4.064
16 C 0.553 3.447
17 O -0.520 6.520
18 N -0.574 5.574
19 C 0.074 3.926
20 C 0.244 3.756
21 C -0.539 4.539
22 H 0.063 0.937
23 C 0.068 3.932
24 N -0.887 5.887
25 Si 0.895 3.105
26 H -0.270 1.270
27 H -0.282 1.282
28 H -0.281 1.281
29 H 0.110 0.890
30 H 0.104 0.896
31 H 0.116 0.884
32 H 0.151 0.849
33 H 0.152 0.848
34 H 0.141 0.859
35 H 0.138 0.862
36 H 0.138 0.862
37 H 0.056 0.944
38 H 0.082 0.918
39 H 0.056 0.944
40 H 0.040 0.960
41 H 0.051 0.949
42 H 0.266 0.734
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.773 -5.649 -1.472 14.044
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.160 4.160
2 C -0.001 4.001
3 N -0.187 5.187
4 N -0.029 5.029
5 N -0.077 5.077
6 N -0.110 5.110
7 C -0.034 4.034
8 C -0.075 4.075
9 C -0.083 4.083
10 C -0.091 4.091
11 C -0.163 4.163
12 C 0.091 3.909
13 F -0.117 7.117
14 C -0.177 4.177
15 C -0.083 4.083
16 C 0.336 3.664
17 O -0.397 6.397
18 N -0.304 5.304
19 C -0.070 4.070
20 C 0.126 3.874
21 C -0.577 4.577
22 H 0.081 0.919
23 C -0.136 4.136
24 N -0.525 5.525
25 Si 0.722 3.278
26 H -0.195 1.195
27 H -0.208 1.208
28 H -0.207 1.207
29 H 0.128 0.872
30 H 0.122 0.878
31 H 0.134 0.866
32 H 0.169 0.831
33 H 0.169 0.831
34 H 0.159 0.841
35 H 0.156 0.844
36 H 0.156 0.844
37 H 0.074 0.926
38 H 0.101 0.899
39 H 0.074 0.926
40 H 0.058 0.942
41 H 0.069 0.931
42 H 0.076 0.924
Dipole moment (debyes) X Y Z Total
from point charges 13.478 -4.970 -0.903 14.393
hybrid contribution -1.216 -0.064 -0.335 1.264
sum 12.261 -5.035 -1.239 13.312
Atomic orbital electron populations
1.21126 0.80834 1.07395 1.06631 1.26202 0.98662 0.81807 0.93382
1.74534 0.96033 1.24527 1.23601 1.77957 1.11807 1.03870 1.09291
1.82558 0.96666 1.05105 1.23370 1.48692 1.06052 1.06034 1.50181
1.20184 0.96015 0.79647 1.07508 1.22032 0.99251 0.90068 0.96168
1.18692 0.98392 0.91719 0.99502 1.21898 0.93957 0.96706 0.96491
1.21122 1.01450 0.92348 1.01357 1.17958 0.96451 0.78375 0.98070
1.91512 1.90946 1.34478 1.94718 1.21016 0.98691 0.97530 1.00432
1.21077 0.98558 0.91054 0.97578 1.17319 0.83420 0.79968 0.85705
1.90897 1.68175 1.54522 1.26136 1.48227 1.11791 1.60412 1.09973
1.21836 0.97320 1.00396 0.87427 1.19514 0.71007 0.97256 0.99587
1.21374 0.91267 0.98476 1.46632 0.91876 1.24897 0.97492 0.96426
0.94738 1.69925 1.08537 1.27538 1.46468 0.86485 0.80099 0.82823
0.78371 1.19477 1.20839 1.20660 0.87220 0.87791 0.86579 0.83100
0.83108 0.84117 0.84365 0.84376 0.92568 0.89900 0.92561 0.94207
0.93106 0.92448
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -1.64 8.94 36.01 0.32 -1.32 16
2 C 0.27 4.64 8.09 -155.18 -1.25 3.39 16
3 N -0.34 -5.91 12.16 32.76 0.40 -5.51 16
4 N -0.03 -0.61 13.39 60.35 0.81 0.20 16
5 N -0.09 -1.51 13.31 60.35 0.80 -0.70 16
6 N -0.32 -5.21 3.85 -6.71 -0.03 -5.23 16
7 C 0.06 0.96 4.95 -81.59 -0.40 0.56 16
8 C -0.05 -0.63 8.68 -37.05 -0.32 -0.96 16
9 C -0.08 -0.96 4.40 -105.07 -0.46 -1.42 16
10 C -0.07 -0.99 8.24 -39.11 -0.32 -1.31 16
11 C -0.14 -1.83 10.01 -39.59 -0.40 -2.23 16
12 C 0.11 1.30 7.31 -39.26 -0.29 1.01 16
13 F -0.14 -1.70 17.26 2.25 0.04 -1.66 16
14 C -0.16 -1.51 10.01 -39.58 -0.40 -1.91 16
15 C -0.06 -0.59 9.79 -39.11 -0.38 -0.98 16
16 C 0.55 9.65 1.20 -12.78 -0.02 9.63 16
17 O -0.52 -10.66 14.36 5.21 0.07 -10.59 16
18 N -0.57 -10.06 2.39 -184.45 -0.44 -10.50 16
19 C 0.07 1.03 9.36 59.85 0.56 1.59 16
20 C 0.24 5.37 5.21 -5.19 -0.03 5.34 16
21 C -0.54 -12.90 8.82 -34.44 -0.30 -13.21 16
22 H 0.06 1.46 6.17 -52.49 -0.32 1.14 16
23 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16
24 N -0.89 -23.70 13.29 55.43 0.74 -22.96 16
25 Si 0.90 19.58 29.54 -169.99 -5.02 14.56 16
26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
29 H 0.11 1.79 8.09 -51.93 -0.42 1.37 16
30 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16
31 H 0.12 2.12 2.99 -51.93 -0.16 1.96 16
32 H 0.15 1.56 7.74 -52.49 -0.41 1.16 16
33 H 0.15 2.40 4.99 -52.49 -0.26 2.14 16
34 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16
35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16
36 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16
37 H 0.06 0.69 7.72 -51.93 -0.40 0.29 16
38 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16
39 H 0.06 0.70 6.38 -51.93 -0.33 0.37 16
40 H 0.04 0.91 8.07 -51.93 -0.42 0.49 16
41 H 0.05 1.26 7.36 -51.93 -0.38 0.88 16
42 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16
LS Contribution 359.55 15.07 5.42 5.42
Total: -1.00 -28.42 359.55 -5.35 -33.77
By element:
Atomic # 1 Polarization: 7.75 SS G_CDS: -4.35 Total: 3.40 kcal
Atomic # 6 Polarization: 3.61 SS G_CDS: -3.79 Total: -0.18 kcal
Atomic # 7 Polarization: -46.99 SS G_CDS: 2.28 Total: -44.71 kcal
Atomic # 8 Polarization: -10.66 SS G_CDS: 0.07 Total: -10.59 kcal
Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal
Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal
Total LS contribution 5.42 Total: 5.42 kcal
Total: -28.42 -5.35 -33.77 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000843418990.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 131.797 kcal
(2) G-P(sol) polarization free energy of solvation -28.420 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.377 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.346 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.766 kcal
(6) G-S(sol) free energy of system = (1) + (5) 98.031 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds