Wall clock time and date at job start Wed Apr 1 2020 03:52:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 N 1.30773 * 126.36272 * 2 1
4 4 N 1.28422 * 110.64071 * 179.97438 * 3 2 1
5 5 N 1.28941 * 110.20543 * 0.02562 * 4 3 2
6 6 N 1.35056 * 126.36952 * 179.97438 * 2 1 3
7 7 C 1.40168 * 127.38375 * 359.75785 * 6 2 1
8 8 C 1.35366 * 120.00197 * 173.86817 * 7 6 2
9 9 C 1.47024 * 119.99889 * 173.56206 * 8 7 6
10 10 C 1.39931 * 120.15050 * 326.46852 * 9 8 7
11 11 C 1.37784 * 119.84652 * 179.74399 * 10 9 8
12 12 C 1.38674 * 120.15254 * 0.53507 * 11 10 9
13 13 F 1.35104 * 119.85378 * 179.69809 * 12 11 10
14 14 C 1.38685 * 120.30045 * 359.71652 * 12 11 10
15 15 C 1.37798 * 120.14722 * 0.02784 * 14 12 11
16 16 C 1.46840 * 120.00180 * 353.87313 * 7 6 2
17 17 O 1.21672 * 119.99793 * 288.46730 * 16 7 6
18 18 N 1.34779 * 120.00442 * 108.46172 * 16 7 6
19 19 C 1.46501 * 119.99666 * 4.37281 * 18 16 7
20 20 C 1.46496 * 120.00207 * 184.36896 * 18 16 7
21 21 C 1.50706 * 109.46962 * 90.00216 * 20 18 16
22 22 H 1.07999 * 119.99621 * 359.97438 * 21 20 18
23 23 C 1.37872 * 119.99995 * 179.97438 * 21 20 18
24 24 N 1.31522 * 120.00048 * 0.02562 * 23 21 20
25 25 Si 1.86798 * 120.00008 * 179.97438 * 23 21 20
26 26 H 1.48498 * 109.47204 * 0.02562 * 25 23 21
27 27 H 1.48500 * 109.47167 * 120.00376 * 25 23 21
28 28 H 1.48503 * 109.47421 * 240.00130 * 25 23 21
29 29 H 1.09002 * 109.46901 * 270.89028 * 1 2 3
30 30 H 1.08996 * 109.47327 * 30.89365 * 1 2 3
31 31 H 1.09001 * 109.46706 * 150.89736 * 1 2 3
32 32 H 1.07997 * 119.99821 * 353.56327 * 8 7 6
33 33 H 1.08002 * 120.06718 * 359.97438 * 10 9 8
34 34 H 1.07999 * 119.92356 * 180.27325 * 11 10 9
35 35 H 1.07992 * 119.92836 * 179.97438 * 14 12 11
36 36 H 1.07996 * 120.07548 * 180.02562 * 15 14 12
37 37 H 1.09003 * 109.46952 * 94.16958 * 19 18 16
38 38 H 1.08997 * 109.46720 * 214.16923 * 19 18 16
39 39 H 1.09003 * 109.47155 * 334.17434 * 19 18 16
40 40 H 1.09000 * 109.47167 * 210.00388 * 20 18 16
41 41 H 1.09003 * 109.47284 * 330.00451 * 20 18 16
42 42 H 0.96998 * 119.99912 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2823 1.0531 0.0000
4 7 3.5185 0.7051 0.0005
5 7 3.6193 -0.5804 0.0004
6 7 2.3079 -1.0875 0.0005
7 6 1.9157 -2.4332 0.0058
8 6 2.8450 -3.4095 -0.1197
9 6 2.4545 -4.8193 0.0273
10 6 1.4379 -5.1776 0.9197
11 6 1.0733 -6.5001 1.0486
12 6 1.7189 -7.4763 0.3047
13 9 1.3607 -8.7719 0.4404
14 6 2.7308 -7.1287 -0.5776
15 6 3.1017 -5.8093 -0.7202
16 6 0.4969 -2.7839 0.1474
17 8 -0.0635 -2.6322 1.2167
18 7 -0.1847 -3.2739 -0.9071
19 6 0.5117 -3.5467 -2.1667
20 6 -1.6220 -3.5338 -0.7935
21 6 -2.3887 -2.2993 -1.1926
22 1 -1.8584 -1.4100 -1.4997
23 6 -3.7672 -2.3052 -1.1658
24 7 -4.4130 -3.3880 -0.7914
25 14 -4.7175 -0.7748 -1.6598
26 1 -3.7643 0.2998 -2.0365
27 1 -5.5928 -1.0879 -2.8179
28 1 -5.5512 -0.3197 -0.5182
29 1 -0.3633 0.0160 1.0276
30 1 -0.3634 0.8818 -0.5276
31 1 -0.3633 -0.8980 -0.4998
32 1 3.8731 -3.1528 -0.3278
33 1 0.9378 -4.4188 1.5032
34 1 0.2859 -6.7775 1.7337
35 1 3.2297 -7.8939 -1.1537
36 1 3.8896 -5.5399 -1.4080
37 1 0.8179 -4.5925 -2.1936
38 1 -0.1567 -3.3421 -3.0031
39 1 1.3923 -2.9084 -2.2407
40 1 -1.8950 -4.3594 -1.4508
41 1 -1.8639 -3.7944 0.2369
42 1 -5.3828 -3.3920 -0.7721
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000843418990.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:52:13
Heat of formation + Delta-G solvation = 82.526393 kcal
Electronic energy + Delta-G solvation = -30935.747529 eV
Core-core repulsion = 26640.790192 eV
Total energy + Delta-G solvation = -4294.957337 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.134 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-49.98721 -44.46008 -41.68405 -39.76920 -37.25618 -36.79406 -34.96252 -34.57101
-33.76459 -32.27163 -30.72115 -29.83770 -29.43464 -27.63452 -26.43817 -25.28160
-24.23002 -23.85966 -23.16285 -21.94387 -20.59561 -18.94981 -18.74756 -18.63163
-18.10914 -17.68627 -17.36120 -17.02990 -16.67664 -16.49516 -16.41995 -16.11127
-15.72913 -15.17716 -14.91979 -14.67897 -14.40801 -14.32059 -14.22984 -14.08553
-13.98634 -13.81869 -13.68373 -13.53339 -13.30079 -13.23091 -13.11177 -13.05091
-12.80127 -12.56634 -12.28945 -12.10097 -12.01791 -11.62222 -11.37350 -11.15569
-10.75825 -10.60072 -10.20407 -9.59169 -9.27773 -8.19545 -6.32414 -1.10439
-0.09703 0.16944 0.28800 0.77510 1.01809 1.42566 1.45835 1.53603
1.57064 2.00175 2.42278 2.51306 2.71029 3.01092 3.14300 3.16898
3.37346 3.42207 3.62238 3.76300 3.83307 4.10819 4.13564 4.18606
4.22002 4.34619 4.45379 4.50640 4.57655 4.63324 4.78062 4.84115
4.85730 4.91608 4.98683 5.06444 5.11565 5.19897 5.25930 5.32906
5.49350 5.76875 5.77630 6.04324 6.40789 6.74017 6.99002 7.12876
7.38606 8.88146
Molecular weight = 345.13amu
Principal moments of inertia in cm(-1)
A = 0.007790 B = 0.005444 C = 0.003444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3593.688899 B = 5142.361390 C = 8127.748035
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.095 4.095
2 C 0.264 3.736
3 N -0.344 5.344
4 N -0.048 5.048
5 N -0.083 5.083
6 N -0.312 5.312
7 C 0.024 3.976
8 C -0.002 4.002
9 C -0.097 4.097
10 C -0.087 4.087
11 C -0.163 4.163
12 C 0.105 3.895
13 F -0.143 7.143
14 C -0.147 4.147
15 C -0.039 4.039
16 C 0.563 3.437
17 O -0.561 6.561
18 N -0.576 5.576
19 C 0.071 3.929
20 C 0.263 3.737
21 C -0.537 4.537
22 H 0.071 0.929
23 C 0.017 3.983
24 N -0.925 5.925
25 Si 0.953 3.047
26 H -0.256 1.256
27 H -0.280 1.280
28 H -0.286 1.286
29 H 0.102 0.898
30 H 0.122 0.878
31 H 0.098 0.902
32 H 0.182 0.818
33 H 0.121 0.879
34 H 0.131 0.869
35 H 0.173 0.827
36 H 0.184 0.816
37 H 0.076 0.924
38 H 0.080 0.920
39 H 0.076 0.924
40 H 0.028 0.972
41 H 0.012 0.988
42 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.595 -6.026 -3.567 17.095
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.011 4.011
3 N -0.196 5.196
4 N -0.042 5.042
5 N -0.068 5.068
6 N -0.102 5.102
7 C -0.072 4.072
8 C -0.025 4.025
9 C -0.098 4.098
10 C -0.106 4.106
11 C -0.182 4.182
12 C 0.086 3.914
13 F -0.122 7.122
14 C -0.165 4.165
15 C -0.057 4.057
16 C 0.348 3.652
17 O -0.442 6.442
18 N -0.305 5.305
19 C -0.071 4.071
20 C 0.143 3.857
21 C -0.576 4.576
22 H 0.089 0.911
23 C -0.182 4.182
24 N -0.565 5.565
25 Si 0.778 3.222
26 H -0.180 1.180
27 H -0.206 1.206
28 H -0.212 1.212
29 H 0.121 0.879
30 H 0.140 0.860
31 H 0.116 0.884
32 H 0.199 0.801
33 H 0.138 0.862
34 H 0.149 0.851
35 H 0.190 0.810
36 H 0.201 0.799
37 H 0.094 0.906
38 H 0.099 0.901
39 H 0.095 0.905
40 H 0.046 0.954
41 H 0.030 0.970
42 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 16.338 -5.353 -3.024 17.457
hybrid contribution -2.000 -0.166 0.363 2.040
sum 14.338 -5.519 -2.661 15.592
Atomic orbital electron populations
1.21024 0.80910 1.07248 1.06236 1.26160 0.98703 0.82058 0.94183
1.74487 0.96199 1.24924 1.23978 1.77931 1.11780 1.04259 1.10217
1.82478 0.96429 1.04779 1.23093 1.48675 1.05907 1.06223 1.49371
1.19790 0.94944 0.79854 1.12575 1.22425 0.99664 0.89478 0.90920
1.18786 0.98638 0.92146 1.00213 1.21685 0.94995 0.96264 0.97611
1.21102 1.02108 0.92697 1.02331 1.18170 0.97008 0.77821 0.98392
1.91501 1.91125 1.34758 1.94799 1.21417 0.97267 0.98622 0.99194
1.21524 0.97932 0.89875 0.96361 1.17466 0.84306 0.78719 0.84683
1.90867 1.69599 1.55901 1.27784 1.48038 1.10274 1.60648 1.11559
1.22034 0.97610 1.02053 0.85396 1.18935 0.73828 0.96217 0.96746
1.21715 0.91496 0.99187 1.45170 0.91121 1.25678 0.98681 0.98869
0.95020 1.70044 1.08639 1.29523 1.48269 0.85578 0.78904 0.80023
0.77713 1.17990 1.20578 1.21234 0.87925 0.85980 0.88394 0.80070
0.86170 0.85071 0.80959 0.79862 0.90594 0.90135 0.90521 0.95399
0.96979 0.92601
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -3.10 8.94 71.24 0.64 -2.47 16
2 C 0.26 8.77 8.09 138.04 1.12 9.88 16
3 N -0.34 -11.80 12.16 -50.28 -0.61 -12.41 16
4 N -0.05 -1.59 13.39 37.02 0.50 -1.10 16
5 N -0.08 -2.54 13.31 37.02 0.49 -2.04 16
6 N -0.31 -9.73 3.85 -175.15 -0.67 -10.40 16
7 C 0.02 0.71 4.95 39.40 0.20 0.90 16
8 C 0.00 -0.05 8.68 23.91 0.21 0.16 16
9 C -0.10 -1.98 4.40 -20.15 -0.09 -2.07 16
10 C -0.09 -2.37 8.24 22.57 0.19 -2.18 16
11 C -0.16 -4.21 10.01 22.27 0.22 -3.99 16
12 C 0.11 2.28 7.31 22.48 0.16 2.45 16
13 F -0.14 -3.35 17.26 44.97 0.78 -2.57 16
14 C -0.15 -2.16 10.01 22.27 0.22 -1.93 16
15 C -0.04 -0.52 9.79 22.58 0.22 -0.30 16
16 C 0.56 19.91 1.20 86.49 0.10 20.01 16
17 O -0.56 -24.32 14.36 -4.26 -0.06 -24.38 16
18 N -0.58 -20.32 2.39 -855.69 -2.04 -22.36 16
19 C 0.07 1.85 9.36 127.77 1.20 3.05 16
20 C 0.26 12.02 5.21 85.64 0.45 12.47 16
21 C -0.54 -26.22 8.82 25.60 0.23 -25.99 16
22 H 0.07 3.28 6.17 -2.91 -0.02 3.26 16
23 C 0.02 0.89 5.46 84.65 0.46 1.35 16
24 N -0.93 -51.08 13.29 21.45 0.28 -50.80 16
25 Si 0.95 40.43 29.54 68.60 2.03 42.46 16
26 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16
27 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16
28 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16
29 H 0.10 3.46 8.09 -2.39 -0.02 3.44 16
30 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16
31 H 0.10 3.61 2.99 -2.39 -0.01 3.60 16
32 H 0.18 2.79 7.74 -2.91 -0.02 2.77 16
33 H 0.12 4.07 4.99 -2.91 -0.01 4.05 16
34 H 0.13 3.46 8.06 -2.91 -0.02 3.43 16
35 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16
36 H 0.18 0.89 8.06 -2.91 -0.02 0.87 16
37 H 0.08 1.65 7.72 -2.39 -0.02 1.63 16
38 H 0.08 2.14 8.10 -2.39 -0.02 2.12 16
39 H 0.08 1.69 6.38 -2.39 -0.02 1.67 16
40 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16
41 H 0.01 0.65 7.36 -2.39 -0.02 0.63 16
42 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16
Total: -1.00 -64.85 359.55 7.29 -57.56
By element:
Atomic # 1 Polarization: 13.62 SS G_CDS: 1.09 Total: 14.71 kcal
Atomic # 6 Polarization: 5.83 SS G_CDS: 5.52 Total: 11.35 kcal
Atomic # 7 Polarization: -97.07 SS G_CDS: -2.05 Total: -99.12 kcal
Atomic # 8 Polarization: -24.32 SS G_CDS: -0.06 Total: -24.38 kcal
Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal
Atomic # 14 Polarization: 40.43 SS G_CDS: 2.03 Total: 42.46 kcal
Total: -64.85 7.29 -57.56 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000843418990.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 140.083 kcal
(2) G-P(sol) polarization free energy of solvation -64.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.233 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.293 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.557 kcal
(6) G-S(sol) free energy of system = (1) + (5) 82.526 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds