Wall clock time and date at job start Wed Apr 1 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.49586 * 2 1 4 4 O 1.21286 * 119.99980 * 264.99479 * 3 2 1 5 5 N 1.34775 * 119.99749 * 85.00375 * 3 2 1 6 6 C 1.47018 * 125.64993 * 359.97196 * 5 3 2 7 7 C 1.54325 * 107.40412 * 178.90064 * 6 5 3 8 8 C 1.55405 * 102.82616 * 337.97548 * 7 6 5 9 9 O 1.42894 * 110.89418 * 277.26698 * 8 7 6 10 10 C 1.50697 * 111.03892 * 153.47058 * 8 7 6 11 11 H 1.08005 * 120.00327 * 247.68453 * 10 8 7 12 12 C 1.37881 * 120.00177 * 67.68091 * 10 8 7 13 13 N 1.31517 * 119.99417 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00128 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47105 * 60.00787 * 14 12 10 16 16 H 1.48503 * 109.46919 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47516 * 300.00419 * 14 12 10 18 18 C 1.47426 * 125.64489 * 180.02562 * 5 3 2 19 19 C 1.52906 * 109.50003 * 239.93442 * 2 1 3 20 20 C 1.50608 * 110.30856 * 289.85744 * 19 2 1 21 21 C 1.38090 * 119.89074 * 158.93250 * 20 19 2 22 22 C 1.38328 * 120.13462 * 179.57467 * 21 20 19 23 23 C 1.38394 * 120.47093 * 0.02562 * 22 21 20 24 24 C 1.38027 * 120.04137 * 0.10679 * 23 22 21 25 25 C 1.39397 * 119.65959 * 359.97438 * 24 23 22 26 26 C 1.48117 * 120.39301 * 179.79903 * 25 24 23 27 27 O 1.21470 * 121.44780 * 350.30372 * 26 25 24 28 28 O 1.35760 * 117.11384 * 170.27738 * 26 25 24 29 29 H 1.09003 * 109.46863 * 60.00003 * 1 2 3 30 30 H 1.09004 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46785 * 299.99779 * 1 2 3 32 32 H 1.09002 * 109.88241 * 298.39592 * 6 5 3 33 33 H 1.09000 * 109.88049 * 59.40721 * 6 5 3 34 34 H 1.09000 * 110.72188 * 96.24097 * 7 6 5 35 35 H 1.09002 * 110.72265 * 219.52294 * 7 6 5 36 36 H 0.96698 * 114.00346 * 292.23261 * 9 8 7 37 37 H 0.97002 * 119.99725 * 179.97438 * 13 12 10 38 38 H 1.08999 * 110.36956 * 322.93474 * 18 5 3 39 39 H 1.09001 * 110.36709 * 85.14667 * 18 5 3 40 40 H 1.08999 * 109.33416 * 50.15204 * 19 2 1 41 41 H 1.08999 * 109.33149 * 169.63914 * 19 2 1 42 42 H 1.07995 * 119.93351 * 359.55747 * 21 20 19 43 43 H 1.08002 * 119.76107 * 179.97438 * 22 21 20 44 44 H 1.07995 * 119.97424 * 180.12512 * 23 22 21 45 45 H 1.08000 * 120.16542 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4206 0.0000 4 8 2.3218 1.9617 -1.0464 5 7 2.1620 2.0898 1.1628 6 6 1.8492 1.5574 2.4970 7 6 2.1757 2.6628 3.5232 8 6 3.1856 3.5597 2.7546 9 8 4.5075 3.0230 2.8347 10 6 3.1485 4.9769 3.2658 11 1 2.7732 5.7690 2.6347 12 6 3.5937 5.2624 4.5391 13 7 4.0511 4.2979 5.3074 14 14 3.5483 7.0191 5.1725 15 1 2.1478 7.5127 5.1631 16 1 4.0785 7.0592 6.5590 17 1 4.3831 7.8821 4.2987 18 6 2.6393 3.4771 1.3073 19 6 2.0404 -0.7221 -1.2474 20 6 1.7627 -2.1989 -1.1469 21 6 1.7281 -2.9721 -2.2906 22 6 1.4821 -4.3305 -2.2033 23 6 1.2682 -4.9274 -0.9732 24 6 1.2971 -4.1668 0.1782 25 6 1.5430 -2.7973 0.0943 26 6 1.5732 -1.9649 1.3191 27 8 1.2182 -2.4058 2.3939 28 8 2.0153 -0.6880 1.1887 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7919 1.2989 2.5544 33 1 2.4577 0.6753 2.6962 34 1 1.2792 3.2263 3.7815 35 1 2.6355 2.2373 4.4153 36 1 4.8912 3.0532 3.7218 37 1 4.3646 4.4988 6.2031 38 1 3.4337 3.6818 0.5896 39 1 1.8156 4.1778 1.1703 40 1 1.5397 -0.3193 -2.1278 41 1 3.1146 -0.5632 -1.3422 42 1 1.8931 -2.5152 -3.2551 43 1 1.4560 -4.9294 -3.1017 44 1 1.0789 -5.9890 -0.9142 45 1 1.1300 -4.6305 1.1392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844013806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:02 Heat of formation + Delta-G solvation = -128.642648 kcal Electronic energy + Delta-G solvation = -31342.766830 eV Core-core repulsion = 27097.527319 eV Total energy + Delta-G solvation = -4245.239511 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.54018 -39.60430 -38.63651 -37.71031 -37.02471 -34.37840 -33.62726 -32.13280 -31.54225 -31.45506 -29.74667 -28.29345 -27.48848 -25.61866 -24.47490 -23.97408 -22.21979 -22.11935 -20.21132 -19.59541 -19.11227 -18.21828 -17.27805 -17.00390 -16.77925 -16.10151 -15.49860 -15.40602 -15.17958 -14.98253 -14.92530 -14.66589 -14.37104 -14.15077 -13.91952 -13.55191 -13.18924 -13.04312 -12.87105 -12.71157 -12.42951 -12.20021 -12.08269 -11.95159 -11.88691 -11.76609 -11.47192 -11.32891 -11.27981 -10.91349 -10.83732 -10.58992 -10.50322 -10.32778 -10.01177 -9.52046 -9.41136 -9.39971 -9.13348 -8.67583 -8.19476 -8.04784 -6.29230 -4.37576 0.33052 0.93125 1.99132 2.53313 3.12087 3.21494 3.24545 3.26968 3.31645 3.36754 3.94036 4.11119 4.23340 4.27778 4.48451 4.51998 4.58877 4.71161 4.91087 4.97843 5.05982 5.20889 5.28002 5.32277 5.36763 5.53949 5.59771 5.65445 5.76124 5.78533 5.88836 5.94980 5.98132 6.02469 6.10240 6.38975 6.41342 6.45082 6.62216 6.75617 6.89546 6.95472 7.28968 7.31783 7.34969 7.73746 7.94875 8.00895 8.35650 8.64070 9.31360 9.49175 10.78389 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.002869 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.100070 B = 9756.238566 C =10354.491874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.116 3.884 3 C 0.542 3.458 4 O -0.541 6.541 5 N -0.587 5.587 6 C 0.101 3.899 7 C -0.140 4.140 8 C 0.250 3.750 9 O -0.584 6.584 10 C -0.537 4.537 11 H 0.065 0.935 12 C 0.072 3.928 13 N -0.896 5.896 14 Si 0.905 3.095 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.117 3.883 19 C -0.096 4.096 20 C -0.030 4.030 21 C -0.127 4.127 22 C -0.082 4.082 23 C -0.136 4.136 24 C -0.050 4.050 25 C -0.175 4.175 26 C 0.527 3.473 27 O -0.445 6.445 28 O -0.336 6.336 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.386 0.614 37 H 0.270 0.730 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.130 0.870 44 H 0.132 0.868 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 -16.256 -12.291 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.076 3.924 3 C 0.327 3.673 4 O -0.420 6.420 5 N -0.316 5.316 6 C -0.021 4.021 7 C -0.179 4.179 8 C 0.210 3.790 9 O -0.394 6.394 10 C -0.575 4.575 11 H 0.083 0.917 12 C -0.130 4.130 13 N -0.535 5.535 14 Si 0.732 3.268 15 H -0.201 1.201 16 H -0.211 1.211 17 H -0.200 1.200 18 C -0.004 4.004 19 C -0.134 4.134 20 C -0.031 4.031 21 C -0.145 4.145 22 C -0.100 4.100 23 C -0.154 4.154 24 C -0.068 4.068 25 C -0.177 4.177 26 C 0.369 3.631 27 O -0.327 6.327 28 O -0.255 6.255 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.152 0.848 43 H 0.148 0.852 44 H 0.150 0.850 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -7.504 -16.228 -12.670 21.913 hybrid contribution 0.015 0.787 1.029 1.296 sum -7.489 -15.441 -11.640 20.737 Atomic orbital electron populations 1.22470 0.91686 1.04045 1.05233 1.22428 0.95803 0.90698 0.83457 1.19101 0.79042 0.85613 0.83548 1.90721 1.51558 1.68864 1.30879 1.48560 1.61511 1.15454 1.06105 1.22339 0.99024 0.98766 0.81968 1.23281 1.01119 0.95781 0.97687 1.19607 0.80641 0.91217 0.87571 1.86089 1.31119 1.85075 1.37129 1.21423 1.43511 0.93108 0.99480 0.91682 1.24999 0.93819 0.97965 0.96231 1.69561 1.42182 1.32073 1.09715 0.86447 0.78574 0.83967 0.77809 1.20056 1.21102 1.19996 1.22494 0.98201 0.80034 0.99654 1.20980 1.04645 0.89855 0.97878 1.20006 0.95073 0.95441 0.92556 1.21035 1.01512 0.93914 0.98020 1.21409 0.95821 0.94689 0.98063 1.21200 1.01721 1.00371 0.92145 1.21277 0.94040 0.91827 0.99665 1.20150 1.08797 0.95329 0.93424 1.20956 0.72602 0.81501 0.88046 1.90812 1.38332 1.73134 1.30397 1.87257 1.67477 1.26077 1.44696 0.89153 0.90830 0.90076 0.93126 0.90431 0.91478 0.89779 0.76158 0.91965 0.90835 0.90757 0.86971 0.87633 0.84783 0.85203 0.85020 0.84398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.09 8.19 37.16 0.30 -1.79 16 2 C 0.12 1.67 0.81 -91.82 -0.07 1.60 16 3 C 0.54 9.87 6.77 -10.98 -0.07 9.79 16 4 O -0.54 -10.81 16.52 5.55 0.09 -10.72 16 5 N -0.59 -11.68 3.33 -170.51 -0.57 -12.25 16 6 C 0.10 1.97 5.68 -3.07 -0.02 1.95 16 7 C -0.14 -3.09 5.66 -24.76 -0.14 -3.23 16 8 C 0.25 6.07 0.89 -89.48 -0.08 5.99 16 9 O -0.58 -15.18 13.18 -35.23 -0.46 -15.65 16 10 C -0.54 -13.86 8.25 -34.44 -0.28 -14.15 16 11 H 0.06 1.65 7.77 -52.48 -0.41 1.24 16 12 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 13 N -0.90 -23.20 10.79 55.43 0.60 -22.60 16 14 Si 0.90 20.11 29.54 -169.99 -5.02 15.08 16 15 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 16 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 C 0.12 2.59 6.08 -2.52 -0.02 2.57 16 19 C -0.10 -1.14 4.17 -27.98 -0.12 -1.25 16 20 C -0.03 -0.32 5.32 -104.24 -0.55 -0.88 16 21 C -0.13 -1.03 9.71 -39.60 -0.38 -1.41 16 22 C -0.08 -0.57 10.03 -39.49 -0.40 -0.96 16 23 C -0.14 -1.02 10.04 -39.60 -0.40 -1.42 16 24 C -0.05 -0.50 9.64 -39.23 -0.38 -0.87 16 25 C -0.18 -2.10 5.18 -104.93 -0.54 -2.65 16 26 C 0.53 7.95 6.73 34.79 0.23 8.18 16 27 O -0.44 -7.63 17.40 -19.08 -0.33 -7.96 16 28 O -0.34 -5.46 6.94 -43.46 -0.30 -5.76 16 29 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.07 0.79 6.46 -51.93 -0.34 0.45 16 31 H 0.08 1.01 7.29 -51.93 -0.38 0.63 16 32 H 0.05 0.88 7.29 -51.93 -0.38 0.50 16 33 H 0.08 1.58 6.40 -51.93 -0.33 1.24 16 34 H 0.07 1.46 8.03 -51.93 -0.42 1.04 16 35 H 0.08 1.97 7.86 -51.93 -0.41 1.56 16 36 H 0.39 10.17 6.93 45.56 0.32 10.48 16 37 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 38 H 0.07 1.70 8.04 -51.93 -0.42 1.29 16 39 H 0.07 1.56 8.02 -51.93 -0.42 1.14 16 40 H 0.11 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.11 1.33 8.10 -51.93 -0.42 0.91 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 45 H 0.14 1.29 7.77 -52.49 -0.41 0.89 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -29.96 366.14 -8.74 -38.70 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -5.25 Total: 12.40 kcal Atomic # 6 Polarization: 6.25 SS G_CDS: -3.01 Total: 3.24 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: 0.03 Total: -34.86 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -1.01 Total: -40.09 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.96 -8.74 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.942 kcal (2) G-P(sol) polarization free energy of solvation -29.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds