Wall clock time and date at job start Wed Apr 1 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50705 * 109.49586 * 2 1 4 4 O 1.21286 * 119.99980 * 264.99479 * 3 2 1 5 5 N 1.34775 * 119.99749 * 85.00375 * 3 2 1 6 6 C 1.47018 * 125.64993 * 359.97196 * 5 3 2 7 7 C 1.54325 * 107.40412 * 178.90064 * 6 5 3 8 8 C 1.55405 * 102.82616 * 337.97548 * 7 6 5 9 9 O 1.42894 * 110.89418 * 277.26698 * 8 7 6 10 10 C 1.50697 * 111.03892 * 153.47058 * 8 7 6 11 11 H 1.08005 * 120.00327 * 247.68453 * 10 8 7 12 12 C 1.37881 * 120.00177 * 67.68091 * 10 8 7 13 13 N 1.31517 * 119.99417 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00128 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47105 * 60.00787 * 14 12 10 16 16 H 1.48503 * 109.46919 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47516 * 300.00419 * 14 12 10 18 18 C 1.47426 * 125.64489 * 180.02562 * 5 3 2 19 19 C 1.52906 * 109.50003 * 239.93442 * 2 1 3 20 20 C 1.50608 * 110.30856 * 289.85744 * 19 2 1 21 21 C 1.38090 * 119.89074 * 158.93250 * 20 19 2 22 22 C 1.38328 * 120.13462 * 179.57467 * 21 20 19 23 23 C 1.38394 * 120.47093 * 0.02562 * 22 21 20 24 24 C 1.38027 * 120.04137 * 0.10679 * 23 22 21 25 25 C 1.39397 * 119.65959 * 359.97438 * 24 23 22 26 26 C 1.48117 * 120.39301 * 179.79903 * 25 24 23 27 27 O 1.21470 * 121.44780 * 350.30372 * 26 25 24 28 28 O 1.35760 * 117.11384 * 170.27738 * 26 25 24 29 29 H 1.09003 * 109.46863 * 60.00003 * 1 2 3 30 30 H 1.09004 * 109.46666 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46785 * 299.99779 * 1 2 3 32 32 H 1.09002 * 109.88241 * 298.39592 * 6 5 3 33 33 H 1.09000 * 109.88049 * 59.40721 * 6 5 3 34 34 H 1.09000 * 110.72188 * 96.24097 * 7 6 5 35 35 H 1.09002 * 110.72265 * 219.52294 * 7 6 5 36 36 H 0.96698 * 114.00346 * 292.23261 * 9 8 7 37 37 H 0.97002 * 119.99725 * 179.97438 * 13 12 10 38 38 H 1.08999 * 110.36956 * 322.93474 * 18 5 3 39 39 H 1.09001 * 110.36709 * 85.14667 * 18 5 3 40 40 H 1.08999 * 109.33416 * 50.15204 * 19 2 1 41 41 H 1.08999 * 109.33149 * 169.63914 * 19 2 1 42 42 H 1.07995 * 119.93351 * 359.55747 * 21 20 19 43 43 H 1.08002 * 119.76107 * 179.97438 * 22 21 20 44 44 H 1.07995 * 119.97424 * 180.12512 * 23 22 21 45 45 H 1.08000 * 120.16542 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0330 1.4206 0.0000 4 8 2.3218 1.9617 -1.0464 5 7 2.1620 2.0898 1.1628 6 6 1.8492 1.5574 2.4970 7 6 2.1757 2.6628 3.5232 8 6 3.1856 3.5597 2.7546 9 8 4.5075 3.0230 2.8347 10 6 3.1485 4.9769 3.2658 11 1 2.7732 5.7690 2.6347 12 6 3.5937 5.2624 4.5391 13 7 4.0511 4.2979 5.3074 14 14 3.5483 7.0191 5.1725 15 1 2.1478 7.5127 5.1631 16 1 4.0785 7.0592 6.5590 17 1 4.3831 7.8821 4.2987 18 6 2.6393 3.4771 1.3073 19 6 2.0404 -0.7221 -1.2474 20 6 1.7627 -2.1989 -1.1469 21 6 1.7281 -2.9721 -2.2906 22 6 1.4821 -4.3305 -2.2033 23 6 1.2682 -4.9274 -0.9732 24 6 1.2971 -4.1668 0.1782 25 6 1.5430 -2.7973 0.0943 26 6 1.5732 -1.9649 1.3191 27 8 1.2182 -2.4058 2.3939 28 8 2.0153 -0.6880 1.1887 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7919 1.2989 2.5544 33 1 2.4577 0.6753 2.6962 34 1 1.2792 3.2263 3.7815 35 1 2.6355 2.2373 4.4153 36 1 4.8912 3.0532 3.7218 37 1 4.3646 4.4988 6.2031 38 1 3.4337 3.6818 0.5896 39 1 1.8156 4.1778 1.1703 40 1 1.5397 -0.3193 -2.1278 41 1 3.1146 -0.5632 -1.3422 42 1 1.8931 -2.5152 -3.2551 43 1 1.4560 -4.9294 -3.1017 44 1 1.0789 -5.9890 -0.9142 45 1 1.1300 -4.6305 1.1392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844013806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:32:01 Heat of formation + Delta-G solvation = -147.208795 kcal Electronic energy + Delta-G solvation = -31343.571918 eV Core-core repulsion = 27097.527319 eV Total energy + Delta-G solvation = -4246.044600 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.62409 -41.00336 -39.52135 -39.26370 -38.40415 -36.19100 -34.62486 -34.14698 -32.49706 -32.24300 -31.39136 -30.05717 -28.37035 -27.33897 -25.42734 -25.23416 -23.70829 -22.91559 -21.76116 -21.19329 -20.12193 -19.50995 -19.09607 -18.27249 -17.88866 -17.15324 -16.96157 -16.92128 -16.44666 -16.41571 -16.13880 -15.92510 -15.54313 -15.36858 -15.10625 -14.91286 -14.46870 -14.23505 -14.05274 -13.90256 -13.70167 -13.59667 -13.41832 -13.27860 -13.20578 -13.00063 -12.90468 -12.79726 -12.59163 -12.51034 -12.29109 -12.14627 -12.03176 -11.90982 -11.53819 -11.31210 -10.87396 -10.63013 -10.16912 -10.09947 -9.82388 -9.68291 -8.25149 -6.40767 -0.49379 0.28250 0.91612 1.28436 1.44247 1.45710 1.53132 1.79633 1.98044 2.39352 2.64608 2.96262 2.99206 3.04223 3.24856 3.42756 3.63533 3.78383 3.82319 3.98697 4.13485 4.23356 4.27496 4.30889 4.34447 4.37021 4.40262 4.51406 4.57060 4.59676 4.68438 4.79757 4.84276 4.92967 4.96813 5.12181 5.16537 5.21015 5.31836 5.41116 5.42014 5.46411 5.68486 5.75762 5.85454 6.02189 6.19142 6.41941 6.63214 6.83911 7.30472 7.42409 8.81186 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.002869 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.100070 B = 9756.238566 C =10354.491874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.118 3.882 3 C 0.539 3.461 4 O -0.559 6.559 5 N -0.594 5.594 6 C 0.116 3.884 7 C -0.131 4.131 8 C 0.235 3.765 9 O -0.596 6.596 10 C -0.559 4.559 11 H 0.063 0.937 12 C 0.032 3.968 13 N -0.913 5.913 14 Si 0.965 3.035 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.275 1.275 18 C 0.124 3.876 19 C -0.091 4.091 20 C -0.038 4.038 21 C -0.123 4.123 22 C -0.068 4.068 23 C -0.129 4.129 24 C -0.061 4.061 25 C -0.197 4.197 26 C 0.527 3.473 27 O -0.481 6.481 28 O -0.363 6.363 29 H 0.110 0.890 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.381 0.619 37 H 0.272 0.728 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.133 0.867 41 H 0.092 0.908 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.162 0.838 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 -17.909 -14.604 24.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.079 3.921 3 C 0.327 3.673 4 O -0.439 6.439 5 N -0.325 5.325 6 C -0.006 4.006 7 C -0.170 4.170 8 C 0.195 3.805 9 O -0.406 6.406 10 C -0.598 4.598 11 H 0.081 0.919 12 C -0.169 4.169 13 N -0.552 5.552 14 Si 0.791 3.209 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.201 1.201 18 C 0.002 3.998 19 C -0.128 4.128 20 C -0.038 4.038 21 C -0.141 4.141 22 C -0.086 4.086 23 C -0.147 4.147 24 C -0.079 4.079 25 C -0.199 4.199 26 C 0.371 3.629 27 O -0.366 6.366 28 O -0.284 6.284 29 H 0.128 0.872 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.151 0.849 41 H 0.110 0.890 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.180 0.820 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.821 -17.897 -15.009 24.968 hybrid contribution 0.471 1.232 1.673 2.131 sum -8.350 -16.665 -13.336 22.919 Atomic orbital electron populations 1.22481 0.89544 1.05110 1.05778 1.22476 0.97276 0.88195 0.84158 1.19789 0.78017 0.87005 0.82535 1.90698 1.52117 1.69839 1.31281 1.48594 1.62253 1.14778 1.06841 1.22145 1.00167 0.97126 0.81144 1.23091 1.00342 0.96111 0.97452 1.19834 0.80241 0.91181 0.89244 1.86078 1.32396 1.85339 1.36790 1.21677 1.44220 0.93863 1.00001 0.91876 1.25700 0.93401 1.01459 0.96321 1.69648 1.42209 1.33512 1.09836 0.85498 0.78677 0.79624 0.77139 1.19371 1.20722 1.20088 1.22281 0.97944 0.81814 0.97798 1.20960 1.03938 0.90895 0.97005 1.19923 0.96239 0.94710 0.92970 1.21363 1.00290 0.94424 0.98003 1.21883 0.93144 0.94383 0.99144 1.21575 1.00083 1.01643 0.91377 1.21416 0.94428 0.91212 1.00822 1.19999 1.11748 0.95851 0.92313 1.21441 0.71439 0.81165 0.88826 1.90776 1.40362 1.73458 1.31993 1.87162 1.67939 1.27370 1.45880 0.87185 0.89465 0.90926 0.90765 0.91497 0.91349 0.91633 0.76778 0.91851 0.92608 0.89815 0.84941 0.89016 0.82243 0.81448 0.82040 0.84764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.85 8.19 71.98 0.59 -3.26 16 2 C 0.12 3.36 0.81 -11.57 -0.01 3.35 16 3 C 0.54 19.71 6.77 87.66 0.59 20.30 16 4 O -0.56 -22.32 16.52 -3.05 -0.05 -22.37 16 5 N -0.59 -24.10 3.33 -811.75 -2.70 -26.80 16 6 C 0.12 4.63 5.68 86.73 0.49 5.12 16 7 C -0.13 -5.97 5.66 31.87 0.18 -5.79 16 8 C 0.24 11.75 0.89 -10.06 -0.01 11.74 16 9 O -0.60 -32.25 13.18 -148.98 -1.96 -34.22 16 10 C -0.56 -29.44 8.25 25.60 0.21 -29.23 16 11 H 0.06 3.26 7.77 -2.91 -0.02 3.23 16 12 C 0.03 1.65 5.30 84.66 0.45 2.10 16 13 N -0.91 -48.14 10.79 21.45 0.23 -47.91 16 14 Si 0.97 41.38 29.54 68.60 2.03 43.41 16 15 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 16 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 18 C 0.12 5.60 6.08 86.86 0.53 6.13 16 19 C -0.09 -2.02 4.17 29.79 0.12 -1.90 16 20 C -0.04 -0.73 5.32 -19.62 -0.10 -0.83 16 21 C -0.12 -1.50 9.71 22.26 0.22 -1.28 16 22 C -0.07 -0.60 10.03 22.33 0.22 -0.38 16 23 C -0.13 -1.44 10.04 22.26 0.22 -1.21 16 24 C -0.06 -1.10 9.64 22.50 0.22 -0.89 16 25 C -0.20 -4.56 5.18 -20.06 -0.10 -4.66 16 26 C 0.53 16.21 6.73 70.45 0.47 16.68 16 27 O -0.48 -17.16 17.40 19.78 0.34 -16.82 16 28 O -0.36 -12.10 6.94 -67.46 -0.47 -12.57 16 29 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.09 1.74 6.46 -2.38 -0.02 1.72 16 31 H 0.07 1.74 7.29 -2.39 -0.02 1.73 16 32 H 0.07 2.59 7.29 -2.39 -0.02 2.57 16 33 H 0.07 2.83 6.40 -2.39 -0.02 2.81 16 34 H 0.07 3.04 8.03 -2.39 -0.02 3.02 16 35 H 0.06 3.19 7.86 -2.39 -0.02 3.18 16 36 H 0.38 20.95 6.93 -74.06 -0.51 20.44 16 37 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.06 2.68 8.04 -2.39 -0.02 2.66 16 39 H 0.08 3.57 8.02 -2.39 -0.02 3.55 16 40 H 0.13 2.33 8.10 -2.39 -0.02 2.31 16 41 H 0.09 2.27 8.10 -2.39 -0.02 2.25 16 42 H 0.16 1.13 8.06 -2.91 -0.02 1.10 16 43 H 0.17 0.31 8.06 -2.91 -0.02 0.28 16 44 H 0.16 0.83 8.06 -2.91 -0.02 0.81 16 45 H 0.13 2.46 7.77 -2.91 -0.02 2.44 16 Total: -1.00 -67.17 366.14 2.24 -64.93 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: 0.52 Total: 36.33 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 4.30 Total: 16.00 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.47 Total: -74.71 kcal Atomic # 8 Polarization: -83.84 SS G_CDS: -2.14 Total: -85.97 kcal Atomic # 14 Polarization: 41.38 SS G_CDS: 2.03 Total: 43.41 kcal Total: -67.17 2.24 -64.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844013806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.276 kcal (2) G-P(sol) polarization free energy of solvation -67.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds