Wall clock time and date at job start Wed Apr 1 2020 03:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48499 * 109.47352 * 269.99864 * 3 2 1 5 5 H 1.48500 * 109.47114 * 30.00579 * 3 2 1 6 6 H 1.48506 * 109.46860 * 149.99970 * 3 2 1 7 7 C 1.37878 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00123 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00022 * 359.97438 * 7 2 1 10 10 O 1.42909 * 110.77885 * 56.76084 * 9 7 2 11 11 C 1.55155 * 110.72080 * 293.52021 * 9 7 2 12 12 C 1.55132 * 101.48719 * 205.96703 * 11 9 7 13 13 N 1.47421 * 104.71877 * 37.29608 * 12 11 9 14 14 C 1.34784 * 125.64692 * 155.81657 * 13 12 11 15 15 O 1.21274 * 119.99897 * 179.42063 * 14 13 12 16 16 C 1.50695 * 119.99635 * 359.69104 * 14 13 12 17 17 H 1.08998 * 110.33156 * 300.69696 * 16 14 13 18 18 C 1.54500 * 110.36648 * 178.46089 * 16 14 13 19 19 C 1.54571 * 102.14668 * 225.81805 * 18 16 14 20 20 H 1.08997 * 110.43976 * 267.98472 * 19 18 16 21 21 C 1.50701 * 110.43931 * 145.58947 * 19 18 16 22 22 C 1.38239 * 119.99780 * 279.72784 * 21 19 18 23 23 C 1.38237 * 119.99597 * 179.76157 * 22 21 19 24 24 C 1.38233 * 120.00096 * 0.51615 * 23 22 21 25 25 C 1.38235 * 119.99748 * 359.73530 * 24 23 22 26 26 C 1.38230 * 120.00439 * 0.02562 * 25 24 23 27 27 O 1.45832 * 104.44164 * 26.84921 * 19 18 16 28 28 C 1.34311 * 109.92601 * 329.32392 * 27 19 18 29 29 O 1.20828 * 125.23340 * 200.92780 * 28 27 19 30 30 C 1.47026 * 108.70759 * 335.55192 * 13 12 11 31 31 H 0.97001 * 120.00505 * 359.97438 * 1 2 3 32 32 H 0.96696 * 113.99661 * 303.23512 * 10 9 7 33 33 H 1.08996 * 111.00640 * 324.21054 * 11 9 7 34 34 H 1.09007 * 111.00169 * 88.02572 * 11 9 7 35 35 H 1.09001 * 110.49783 * 278.45863 * 12 11 9 36 36 H 1.09000 * 110.33989 * 156.06084 * 12 11 9 37 37 H 1.08995 * 110.86417 * 343.98669 * 18 16 14 38 38 H 1.08998 * 110.86637 * 107.44826 * 18 16 14 39 39 H 1.07994 * 120.00009 * 359.97438 * 22 21 19 40 40 H 1.08007 * 119.99891 * 180.22691 * 23 22 21 41 41 H 1.07997 * 120.00151 * 179.71939 * 24 23 22 42 42 H 1.08003 * 119.99805 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00457 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.87892 * 120.70064 * 30 13 12 45 45 H 1.09001 * 109.88127 * 241.71491 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3628 -2.5718 -1.1177 11 6 0.4755 -2.6853 1.3303 12 6 0.3775 -4.2311 1.4172 13 7 1.6655 -4.7182 0.8907 14 6 2.2309 -5.9082 1.1753 15 8 3.2933 -6.2099 0.6744 16 6 1.5398 -6.8661 2.1110 17 1 1.3954 -6.4038 3.0875 18 6 2.3592 -8.1686 2.2487 19 6 1.2695 -9.2553 2.1038 20 1 0.8782 -9.5347 3.0820 21 6 1.8230 -10.4644 1.3947 22 6 1.9348 -10.4665 0.0168 23 6 2.4471 -11.5737 -0.6333 24 6 2.8375 -12.6828 0.0936 25 6 2.7208 -12.6825 1.4710 26 6 2.2132 -11.5735 2.1215 27 8 0.2308 -8.6236 1.2984 28 6 0.2108 -7.3012 1.5325 29 8 -0.7252 -6.5688 1.3148 30 6 2.2281 -3.6937 -0.0013 31 1 -0.4851 0.8400 0.0004 32 1 -0.2719 -1.8437 -1.1635 33 1 1.0380 -2.2783 2.1706 34 1 -0.5154 -2.2350 1.2714 35 1 -0.4458 -4.5965 0.8034 36 1 0.2480 -4.5449 2.4530 37 1 3.0968 -8.2495 1.4503 38 1 2.8395 -8.2237 3.2256 39 1 1.6252 -9.6019 -0.5514 40 1 2.5379 -11.5740 -1.7095 41 1 3.2335 -13.5495 -0.4146 42 1 3.0255 -13.5492 2.0389 43 1 2.1216 -11.5735 3.1977 44 1 3.2029 -3.3755 0.3682 45 1 2.3268 -4.0944 -1.0102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844020238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:41 Heat of formation + Delta-G solvation = -129.118112 kcal Electronic energy + Delta-G solvation = -30551.068887 eV Core-core repulsion = 26305.808758 eV Total energy + Delta-G solvation = -4245.260129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.60431 -39.57015 -39.05096 -37.68783 -37.21453 -34.35847 -33.43620 -32.15828 -31.98330 -31.17478 -29.81232 -28.40496 -27.49027 -25.25144 -23.43314 -23.00540 -22.52055 -21.88688 -21.33122 -19.70816 -18.79950 -17.73953 -17.60179 -17.27767 -16.84326 -16.70736 -15.90910 -15.48983 -15.24591 -14.95926 -14.80066 -14.69321 -14.27856 -13.91754 -13.71785 -13.62928 -13.41373 -13.32467 -13.04016 -12.69030 -12.45370 -12.25378 -12.00883 -11.81027 -11.55481 -11.52054 -11.37550 -11.34960 -11.29716 -10.92039 -10.83596 -10.56488 -10.50124 -10.21983 -10.11198 -9.67826 -9.38220 -9.19788 -9.07205 -8.67664 -8.20934 -8.06843 -6.30278 -4.38027 0.94822 1.12993 1.84635 2.67831 2.93443 3.19429 3.26515 3.28001 3.33498 3.50744 3.81406 3.95926 4.24183 4.27618 4.43371 4.57236 4.68757 4.75054 4.81838 4.88958 4.97095 4.99155 5.20497 5.30864 5.42263 5.58800 5.62704 5.74406 5.76095 5.82535 5.97008 6.09041 6.13411 6.20663 6.24650 6.32203 6.42931 6.55199 6.64331 6.68153 6.88371 6.95857 7.29162 7.33793 7.36145 7.72661 7.95798 7.98333 8.37031 8.63943 9.30526 9.46295 10.77515 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.002449 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.402105 B =11432.746966 C =11713.745493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.586 6.586 11 C -0.139 4.139 12 C 0.096 3.904 13 N -0.596 5.596 14 C 0.535 3.465 15 O -0.543 6.543 16 C -0.176 4.176 17 H 0.140 0.860 18 C -0.133 4.133 19 C 0.126 3.874 20 H 0.107 0.893 21 C -0.092 4.092 22 C -0.088 4.088 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.122 4.122 26 C -0.104 4.104 27 O -0.334 6.334 28 C 0.492 3.508 29 O -0.425 6.425 30 C 0.122 3.878 31 H 0.269 0.731 32 H 0.387 0.613 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.057 0.943 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.074 0.926 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.415 -21.526 7.433 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.396 6.396 11 C -0.178 4.178 12 C -0.026 4.026 13 N -0.327 5.327 14 C 0.321 3.679 15 O -0.422 6.422 16 C -0.199 4.199 17 H 0.158 0.842 18 C -0.171 4.171 19 C 0.071 3.929 20 H 0.125 0.875 21 C -0.092 4.092 22 C -0.106 4.106 23 C -0.137 4.137 24 C -0.132 4.132 25 C -0.140 4.140 26 C -0.122 4.122 27 O -0.251 6.251 28 C 0.329 3.671 29 O -0.306 6.306 30 C 0.001 3.999 31 H 0.080 0.920 32 H 0.239 0.761 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.075 0.925 37 H 0.133 0.867 38 H 0.123 0.877 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.092 0.908 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.585 -21.910 6.810 23.089 hybrid contribution 0.106 1.540 0.337 1.580 sum 2.691 -20.370 7.147 21.754 Atomic orbital electron populations 1.69578 1.05971 1.27768 1.50291 1.24997 0.95036 0.99572 0.93468 0.86394 0.79758 0.82324 0.78366 1.20367 1.21029 1.19742 1.21528 0.93677 0.90187 1.51955 0.91704 1.19423 0.86150 0.90554 0.83076 1.86102 1.51242 1.53331 1.48941 1.23402 1.02846 0.90636 1.00908 1.22823 0.85079 0.96936 0.97721 1.48650 1.22549 1.15729 1.45742 1.19035 0.85301 0.81258 0.82321 1.90675 1.22412 1.75589 1.53546 1.22712 0.95600 0.98702 1.02887 0.84210 1.23090 0.97972 0.89328 1.06715 1.22480 0.85894 0.91410 0.93109 0.87512 1.19457 1.01263 0.94196 0.94315 1.21071 0.97021 0.98719 0.93819 1.21210 0.98781 0.93405 1.00308 1.21233 0.99344 0.98322 0.94322 1.21087 1.00091 0.98180 0.94681 1.20876 0.99126 0.92350 0.99839 1.87151 1.54798 1.21835 1.61276 1.22606 0.87931 0.81436 0.75078 1.90783 1.39114 1.53738 1.46943 1.22162 0.97549 0.87506 0.92712 0.92047 0.76125 0.91576 0.89551 0.89748 0.92485 0.86681 0.87703 0.85508 0.85677 0.85927 0.85742 0.85631 0.90757 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.15 10.70 55.43 0.59 -22.56 16 2 C 0.07 1.84 5.28 -17.82 -0.09 1.75 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -13.97 8.21 -34.44 -0.28 -14.25 16 8 H 0.06 1.69 7.53 -52.49 -0.40 1.29 16 9 C 0.25 6.08 0.86 -89.94 -0.08 6.00 16 10 O -0.59 -15.20 13.09 -35.23 -0.46 -15.66 16 11 C -0.14 -3.07 5.69 -24.46 -0.14 -3.21 16 12 C 0.10 1.87 5.02 -2.41 -0.01 1.86 16 13 N -0.60 -11.96 3.32 -170.38 -0.57 -12.53 16 14 C 0.54 9.70 7.23 -10.98 -0.08 9.62 16 15 O -0.54 -11.05 15.69 5.56 0.09 -10.96 16 16 C -0.18 -2.32 2.67 -91.83 -0.24 -2.57 16 17 H 0.14 1.47 7.85 -51.93 -0.41 1.06 16 18 C -0.13 -1.37 6.15 -25.12 -0.15 -1.53 16 19 C 0.13 1.22 3.75 -27.06 -0.10 1.11 16 20 H 0.11 0.71 8.07 -51.93 -0.42 0.29 16 21 C -0.09 -0.90 4.97 -104.62 -0.52 -1.42 16 22 C -0.09 -0.97 9.37 -39.58 -0.37 -1.34 16 23 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 24 C -0.11 -0.90 10.05 -39.58 -0.40 -1.30 16 25 C -0.12 -0.90 10.05 -39.59 -0.40 -1.30 16 26 C -0.10 -0.81 9.69 -39.59 -0.38 -1.19 16 27 O -0.33 -4.47 9.97 -39.11 -0.39 -4.86 16 28 C 0.49 7.32 7.79 36.31 0.28 7.60 16 29 O -0.42 -7.58 14.15 -18.39 -0.26 -7.84 16 30 C 0.12 2.77 6.22 -3.06 -0.02 2.75 16 31 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.39 10.10 6.98 45.56 0.32 10.42 16 33 H 0.07 1.45 8.04 -51.93 -0.42 1.04 16 34 H 0.09 2.00 7.77 -51.93 -0.40 1.59 16 35 H 0.08 1.76 6.33 -51.93 -0.33 1.44 16 36 H 0.06 0.95 7.34 -51.93 -0.38 0.56 16 37 H 0.11 1.45 6.50 -51.93 -0.34 1.11 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.13 1.54 7.66 -52.49 -0.40 1.14 16 40 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 41 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 43 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.07 1.68 7.63 -51.93 -0.40 1.28 16 45 H 0.06 1.49 8.07 -51.93 -0.42 1.07 16 LS Contribution 369.27 15.07 5.56 5.56 Total: -1.00 -30.71 369.27 -9.08 -39.79 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -5.24 Total: 12.78 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.39 Total: 1.08 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.03 Total: -35.09 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -1.02 Total: -39.32 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.71 -9.08 -39.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844020238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.325 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds