Wall clock time and date at job start Wed Apr 1 2020 03:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48499 * 109.47352 * 269.99864 * 3 2 1 5 5 H 1.48500 * 109.47114 * 30.00579 * 3 2 1 6 6 H 1.48506 * 109.46860 * 149.99970 * 3 2 1 7 7 C 1.37878 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00123 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00022 * 359.97438 * 7 2 1 10 10 O 1.42909 * 110.77885 * 56.76084 * 9 7 2 11 11 C 1.55155 * 110.72080 * 293.52021 * 9 7 2 12 12 C 1.55132 * 101.48719 * 205.96703 * 11 9 7 13 13 N 1.47421 * 104.71877 * 37.29608 * 12 11 9 14 14 C 1.34784 * 125.64692 * 155.81657 * 13 12 11 15 15 O 1.21274 * 119.99897 * 179.42063 * 14 13 12 16 16 C 1.50695 * 119.99635 * 359.69104 * 14 13 12 17 17 H 1.08998 * 110.33156 * 300.69696 * 16 14 13 18 18 C 1.54500 * 110.36648 * 178.46089 * 16 14 13 19 19 C 1.54571 * 102.14668 * 225.81805 * 18 16 14 20 20 H 1.08997 * 110.43976 * 267.98472 * 19 18 16 21 21 C 1.50701 * 110.43931 * 145.58947 * 19 18 16 22 22 C 1.38239 * 119.99780 * 279.72784 * 21 19 18 23 23 C 1.38237 * 119.99597 * 179.76157 * 22 21 19 24 24 C 1.38233 * 120.00096 * 0.51615 * 23 22 21 25 25 C 1.38235 * 119.99748 * 359.73530 * 24 23 22 26 26 C 1.38230 * 120.00439 * 0.02562 * 25 24 23 27 27 O 1.45832 * 104.44164 * 26.84921 * 19 18 16 28 28 C 1.34311 * 109.92601 * 329.32392 * 27 19 18 29 29 O 1.20828 * 125.23340 * 200.92780 * 28 27 19 30 30 C 1.47026 * 108.70759 * 335.55192 * 13 12 11 31 31 H 0.97001 * 120.00505 * 359.97438 * 1 2 3 32 32 H 0.96696 * 113.99661 * 303.23512 * 10 9 7 33 33 H 1.08996 * 111.00640 * 324.21054 * 11 9 7 34 34 H 1.09007 * 111.00169 * 88.02572 * 11 9 7 35 35 H 1.09001 * 110.49783 * 278.45863 * 12 11 9 36 36 H 1.09000 * 110.33989 * 156.06084 * 12 11 9 37 37 H 1.08995 * 110.86417 * 343.98669 * 18 16 14 38 38 H 1.08998 * 110.86637 * 107.44826 * 18 16 14 39 39 H 1.07994 * 120.00009 * 359.97438 * 22 21 19 40 40 H 1.08007 * 119.99891 * 180.22691 * 23 22 21 41 41 H 1.07997 * 120.00151 * 179.71939 * 24 23 22 42 42 H 1.08003 * 119.99805 * 179.97438 * 25 24 23 43 43 H 1.08002 * 120.00457 * 179.97438 * 26 25 24 44 44 H 1.09002 * 109.87892 * 120.70064 * 30 13 12 45 45 H 1.09001 * 109.88127 * 241.71491 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.3628 -2.5718 -1.1177 11 6 0.4755 -2.6853 1.3303 12 6 0.3775 -4.2311 1.4172 13 7 1.6655 -4.7182 0.8907 14 6 2.2309 -5.9082 1.1753 15 8 3.2933 -6.2099 0.6744 16 6 1.5398 -6.8661 2.1110 17 1 1.3954 -6.4038 3.0875 18 6 2.3592 -8.1686 2.2487 19 6 1.2695 -9.2553 2.1038 20 1 0.8782 -9.5347 3.0820 21 6 1.8230 -10.4644 1.3947 22 6 1.9348 -10.4665 0.0168 23 6 2.4471 -11.5737 -0.6333 24 6 2.8375 -12.6828 0.0936 25 6 2.7208 -12.6825 1.4710 26 6 2.2132 -11.5735 2.1215 27 8 0.2308 -8.6236 1.2984 28 6 0.2108 -7.3012 1.5325 29 8 -0.7252 -6.5688 1.3148 30 6 2.2281 -3.6937 -0.0013 31 1 -0.4851 0.8400 0.0004 32 1 -0.2719 -1.8437 -1.1635 33 1 1.0380 -2.2783 2.1706 34 1 -0.5154 -2.2350 1.2714 35 1 -0.4458 -4.5965 0.8034 36 1 0.2480 -4.5449 2.4530 37 1 3.0968 -8.2495 1.4503 38 1 2.8395 -8.2237 3.2256 39 1 1.6252 -9.6019 -0.5514 40 1 2.5379 -11.5740 -1.7095 41 1 3.2335 -13.5495 -0.4146 42 1 3.0255 -13.5492 2.0389 43 1 2.1216 -11.5735 3.1977 44 1 3.2029 -3.3755 0.3682 45 1 2.3268 -4.0944 -1.0102 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844020238.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:39 Heat of formation + Delta-G solvation = -148.448825 kcal Electronic energy + Delta-G solvation = -30551.907129 eV Core-core repulsion = 26305.808758 eV Total energy + Delta-G solvation = -4246.098371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.68567 -40.85640 -40.02045 -39.13568 -38.57167 -36.18260 -34.39969 -34.17384 -32.88080 -31.80205 -31.47803 -30.12334 -28.52607 -26.99447 -24.59838 -23.93601 -23.62361 -23.04264 -22.16975 -21.52308 -20.19373 -19.28980 -18.70229 -18.62705 -18.10750 -17.71465 -17.05075 -16.97488 -16.71995 -16.30485 -16.11683 -15.90044 -15.59055 -15.18286 -14.91632 -14.76250 -14.56389 -14.23861 -14.19412 -13.92988 -13.85973 -13.51327 -13.38225 -13.26084 -13.21340 -13.12735 -12.71276 -12.62062 -12.47281 -12.28826 -12.19181 -12.03336 -11.97228 -11.61634 -11.45665 -11.33142 -11.12124 -10.65377 -10.16912 -9.83813 -9.74194 -9.71295 -8.26634 -6.41794 0.29117 0.48493 0.68746 1.31386 1.41481 1.44179 1.53172 1.81369 2.03170 2.38221 2.67404 2.90750 2.97942 3.02133 3.27591 3.61911 3.75383 3.84867 3.88501 3.94183 4.00079 4.14180 4.21359 4.23330 4.31693 4.40354 4.53607 4.60168 4.64188 4.65980 4.75317 4.88396 4.96920 5.01434 5.12292 5.13837 5.16640 5.41709 5.44035 5.47451 5.52773 5.61426 5.69323 5.74179 6.01586 6.07177 6.20113 6.41699 6.61959 6.86221 7.28967 7.40964 8.80061 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.026300 B = 0.002449 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.402105 B =11432.746966 C =11713.745493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.034 3.966 3 Si 0.964 3.036 4 H -0.279 1.279 5 H -0.277 1.277 6 H -0.271 1.271 7 C -0.560 4.560 8 H 0.057 0.943 9 C 0.234 3.766 10 O -0.597 6.597 11 C -0.130 4.130 12 C 0.112 3.888 13 N -0.604 5.604 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.165 4.165 17 H 0.178 0.822 18 C -0.125 4.125 19 C 0.126 3.874 20 H 0.151 0.849 21 C -0.107 4.107 22 C -0.119 4.119 23 C -0.136 4.136 24 C -0.118 4.118 25 C -0.122 4.122 26 C -0.099 4.099 27 O -0.348 6.348 28 C 0.493 3.507 29 O -0.463 6.463 30 C 0.128 3.872 31 H 0.273 0.727 32 H 0.382 0.618 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.149 0.851 39 H 0.097 0.903 40 H 0.128 0.872 41 H 0.145 0.855 42 H 0.155 0.845 43 H 0.160 0.840 44 H 0.070 0.930 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.117 -23.469 10.412 25.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.167 4.167 3 Si 0.790 3.210 4 H -0.205 1.205 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.598 4.598 8 H 0.075 0.925 9 C 0.194 3.806 10 O -0.408 6.408 11 C -0.168 4.168 12 C -0.010 4.010 13 N -0.335 5.335 14 C 0.319 3.681 15 O -0.449 6.449 16 C -0.188 4.188 17 H 0.196 0.804 18 C -0.162 4.162 19 C 0.072 3.928 20 H 0.169 0.831 21 C -0.107 4.107 22 C -0.138 4.138 23 C -0.154 4.154 24 C -0.136 4.136 25 C -0.140 4.140 26 C -0.117 4.117 27 O -0.265 6.265 28 C 0.333 3.667 29 O -0.346 6.346 30 C 0.006 3.994 31 H 0.083 0.917 32 H 0.234 0.766 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.167 0.833 39 H 0.116 0.884 40 H 0.146 0.854 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.178 0.822 44 H 0.089 0.911 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.298 -23.898 9.800 26.039 hybrid contribution -0.058 2.014 -0.668 2.122 sum 3.240 -21.884 9.132 23.933 Atomic orbital electron populations 1.69648 1.06773 1.28570 1.49934 1.25663 0.95871 1.02231 0.92958 0.85463 0.78672 0.78757 0.78146 1.20466 1.20215 1.19536 1.21729 0.93551 0.91454 1.53111 0.92477 1.19633 0.86492 0.90801 0.83695 1.86093 1.51429 1.53143 1.50103 1.23204 1.01499 0.92719 0.99418 1.22663 0.84207 0.94687 0.99443 1.48706 1.22771 1.16225 1.45797 1.19879 0.85048 0.80914 0.82258 1.90665 1.23812 1.75955 1.54484 1.22784 0.94486 0.98776 1.02716 0.80448 1.23167 0.97293 0.87621 1.08151 1.22913 0.84886 0.90739 0.94267 0.83147 1.19606 1.02025 0.95254 0.93792 1.21039 0.99148 0.98627 0.94951 1.21366 0.99346 0.93799 1.00859 1.21556 0.98664 0.98266 0.95065 1.21529 0.98858 0.99036 0.94554 1.21258 0.97694 0.91251 1.01471 1.87142 1.56235 1.21246 1.61889 1.22821 0.87963 0.81748 0.74217 1.90761 1.40512 1.54793 1.48579 1.21879 0.97241 0.87900 0.92394 0.91744 0.76616 0.91534 0.90936 0.91325 0.88796 0.89408 0.83274 0.88432 0.85406 0.83761 0.82730 0.82197 0.91129 0.94023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.43 10.70 21.45 0.23 -47.20 16 2 C 0.03 1.75 5.28 84.66 0.45 2.20 16 3 Si 0.96 41.50 29.54 68.60 2.03 43.52 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.56 -29.90 8.21 25.60 0.21 -29.69 16 8 H 0.06 3.05 7.53 -2.91 -0.02 3.03 16 9 C 0.23 11.79 0.86 -10.35 -0.01 11.78 16 10 O -0.60 -32.26 13.09 -148.98 -1.95 -34.21 16 11 C -0.13 -5.79 5.69 32.06 0.18 -5.61 16 12 C 0.11 4.30 5.02 86.93 0.44 4.74 16 13 N -0.60 -24.42 3.32 -811.34 -2.70 -27.12 16 14 C 0.53 19.04 7.23 87.65 0.63 19.67 16 15 O -0.57 -23.42 15.69 -3.01 -0.05 -23.47 16 16 C -0.17 -3.99 2.67 -11.58 -0.03 -4.02 16 17 H 0.18 2.96 7.85 -2.39 -0.02 2.94 16 18 C -0.12 -2.22 6.15 31.64 0.19 -2.02 16 19 C 0.13 2.07 3.75 30.38 0.11 2.18 16 20 H 0.15 1.20 8.07 -2.39 -0.02 1.18 16 21 C -0.11 -1.89 4.97 -19.87 -0.10 -1.99 16 22 C -0.12 -2.69 9.37 22.27 0.21 -2.48 16 23 C -0.14 -2.54 10.05 22.27 0.22 -2.32 16 24 C -0.12 -1.63 10.05 22.27 0.22 -1.40 16 25 C -0.12 -1.37 10.05 22.27 0.22 -1.14 16 26 C -0.10 -1.17 9.69 22.27 0.22 -0.95 16 27 O -0.35 -9.03 9.97 -52.55 -0.52 -9.56 16 28 C 0.49 14.21 7.79 71.44 0.56 14.76 16 29 O -0.46 -16.44 14.15 21.61 0.31 -16.14 16 30 C 0.13 6.05 6.22 86.73 0.54 6.59 16 31 H 0.27 13.49 8.31 -92.71 -0.77 12.72 16 32 H 0.38 20.78 6.98 -74.06 -0.52 20.26 16 33 H 0.07 2.92 8.04 -2.39 -0.02 2.90 16 34 H 0.07 3.42 7.77 -2.38 -0.02 3.40 16 35 H 0.07 2.91 6.33 -2.39 -0.02 2.90 16 36 H 0.09 2.92 7.34 -2.39 -0.02 2.90 16 37 H 0.09 2.13 6.50 -2.39 -0.02 2.11 16 38 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.10 2.65 7.66 -2.91 -0.02 2.63 16 40 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 43 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 44 H 0.07 3.31 7.63 -2.39 -0.02 3.29 16 45 H 0.04 2.08 8.07 -2.39 -0.02 2.06 16 Total: -1.00 -70.38 369.27 2.13 -68.25 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.51 Total: 35.64 kcal Atomic # 6 Polarization: 6.02 SS G_CDS: 4.27 Total: 10.29 kcal Atomic # 7 Polarization: -71.85 SS G_CDS: -2.47 Total: -74.32 kcal Atomic # 8 Polarization: -81.16 SS G_CDS: -2.22 Total: -83.38 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.52 kcal Total: -70.38 2.13 -68.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844020238.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.201 kcal (2) G-P(sol) polarization free energy of solvation -70.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds