Wall clock time and date at job start Wed Apr 1 2020 03:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48499 * 109.47237 * 240.00166 * 3 2 1 5 5 H 1.48502 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47502 * 119.99691 * 3 2 1 7 7 C 1.37876 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00105 * 185.91684 * 7 2 1 9 9 C 1.50700 * 119.99570 * 5.91279 * 7 2 1 10 10 C 1.53003 * 115.55033 * 275.02794 * 9 7 2 11 11 S 1.81403 * 109.47092 * 294.39529 * 10 9 7 12 12 O 1.42097 * 110.54130 * 293.32110 * 11 10 9 13 13 O 1.42099 * 110.54206 * 70.06912 * 11 10 9 14 14 N 1.65603 * 104.45006 * 181.69470 * 11 10 9 15 15 C 1.46924 * 120.62795 * 89.99739 * 14 11 10 16 16 C 1.53193 * 108.77109 * 126.37146 * 15 14 11 17 17 C 1.53038 * 109.31436 * 54.63399 * 16 15 14 18 18 C 1.53040 * 109.54044 * 298.63408 * 17 16 15 19 19 H 1.08999 * 109.49306 * 301.41620 * 18 17 16 20 20 C 1.53002 * 109.49943 * 181.34839 * 18 17 16 21 21 C 1.53002 * 109.46904 * 65.00205 * 20 18 17 22 22 C 1.50701 * 109.46566 * 179.97438 * 21 20 18 23 23 O 1.20818 * 120.00577 * 0.02562 * 22 21 20 24 24 O 1.34230 * 119.99369 * 179.97438 * 22 21 20 25 25 C 1.46925 * 120.63113 * 269.72292 * 14 11 10 26 26 C 1.52994 * 117.49859 * 129.36240 * 9 7 2 27 27 C 1.52996 * 117.50095 * 60.69540 * 9 7 2 28 28 H 0.97001 * 119.99948 * 354.97446 * 1 2 3 29 29 H 1.09000 * 109.47072 * 54.39338 * 10 9 7 30 30 H 1.09002 * 109.47158 * 174.39394 * 10 9 7 31 31 H 1.09001 * 109.58479 * 246.15518 * 15 14 11 32 32 H 1.08999 * 109.58819 * 6.58351 * 15 14 11 33 33 H 1.09000 * 109.49574 * 174.58104 * 16 15 14 34 34 H 1.09001 * 109.50185 * 294.64762 * 16 15 14 35 35 H 1.09008 * 109.46233 * 58.65501 * 17 16 15 36 36 H 1.09004 * 109.46026 * 178.61174 * 17 16 15 37 37 H 1.09003 * 109.46660 * 184.99823 * 20 18 17 38 38 H 1.09000 * 109.47223 * 305.00082 * 20 18 17 39 39 H 1.08999 * 109.46711 * 299.99515 * 21 20 18 40 40 H 1.09000 * 109.47280 * 59.99913 * 21 20 18 41 41 H 0.96710 * 116.99580 * 179.97438 * 24 22 21 42 42 H 1.09006 * 109.58614 * 353.41764 * 25 14 11 43 43 H 1.08998 * 109.59134 * 113.84187 * 25 14 11 44 44 H 1.09005 * 117.49834 * 359.97438 * 26 9 7 45 45 H 1.09002 * 117.50090 * 145.02161 * 26 9 7 46 46 H 1.08996 * 117.50323 * 214.97821 * 27 9 7 47 47 H 1.09001 * 117.49876 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0802 -1.1964 0.0969 9 6 1.2571 -2.4957 -0.1333 10 6 0.7026 -3.0753 1.1696 11 16 2.0774 -3.5408 2.2577 12 8 2.8101 -4.6230 1.7001 13 8 2.7396 -2.3829 2.7475 14 7 1.3453 -4.1888 3.5943 15 6 1.0504 -5.6265 3.6632 16 6 1.6589 -6.1934 4.9497 17 6 1.1494 -5.3892 6.1478 18 6 1.5881 -3.9296 6.0085 19 1 2.6753 -3.8808 5.9488 20 6 1.1070 -3.1335 7.2233 21 6 1.8093 -3.6486 8.4812 22 6 1.3359 -2.8640 9.6776 23 8 0.5202 -1.9837 9.5386 24 8 1.8198 -3.1440 10.8980 25 6 0.9839 -3.3380 4.7363 26 6 1.7437 -3.4838 -1.1952 27 6 0.4385 -2.7125 -1.4076 28 1 -0.4850 0.8368 0.0736 29 1 0.0839 -2.3274 1.6656 30 1 0.1002 -3.9563 0.9480 31 1 -0.0289 -5.7780 3.6718 32 1 1.4855 -6.1305 2.8002 33 1 1.3660 -7.2374 5.0613 34 1 2.7455 -6.1238 4.8998 35 1 0.0610 -5.4395 6.1827 36 1 1.5615 -5.8061 7.0668 37 1 1.3417 -2.0785 7.0823 38 1 0.0294 -3.2546 7.3335 39 1 1.5746 -4.7037 8.6221 40 1 2.8870 -3.5276 8.3711 41 1 1.4865 -2.6136 11.6347 42 1 1.3750 -2.3324 4.5811 43 1 -0.1010 -3.2991 4.8342 44 1 2.6042 -3.1921 -1.7974 45 1 1.6684 -4.5467 -0.9659 46 1 -0.4948 -3.2683 -1.3179 47 1 0.4403 -1.9134 -2.1490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844796258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:59 Heat of formation + Delta-G solvation = -157.404962 kcal Electronic energy + Delta-G solvation = -29387.740141 eV Core-core repulsion = 25276.697354 eV Total energy + Delta-G solvation = -4111.042787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.54628 -38.83197 -36.74497 -36.47755 -36.33139 -35.09079 -34.55661 -32.02687 -31.86633 -30.27293 -28.14216 -25.56910 -25.45512 -24.36584 -22.32300 -21.22749 -21.08916 -20.05864 -19.51767 -18.34913 -18.16890 -17.17911 -16.78352 -16.46554 -16.38321 -15.62188 -15.14308 -14.81368 -14.63767 -14.49739 -14.23020 -13.91767 -13.82750 -13.53741 -13.46384 -13.12856 -13.04100 -12.34478 -12.11232 -11.93841 -11.83562 -11.82035 -11.65157 -11.36329 -11.27352 -11.16763 -11.03673 -10.99585 -10.89750 -10.86654 -10.81513 -10.59529 -10.47725 -10.45158 -10.27195 -10.10111 -9.68986 -8.98360 -8.77720 -8.55024 -8.05582 -6.12069 -4.22818 1.03841 1.94516 2.76135 3.32810 3.33769 3.35938 3.42623 4.38756 4.42543 4.53073 4.63053 4.64344 4.82160 4.84314 4.97307 5.01145 5.14332 5.18382 5.20967 5.25080 5.32072 5.40864 5.48294 5.52898 5.66012 5.73348 5.77754 5.82676 5.89885 5.94057 5.97781 6.05630 6.10295 6.22140 6.24786 6.34241 6.35097 6.42047 6.61942 6.71198 6.87470 7.00009 7.25192 7.39962 7.60983 7.82001 8.21406 8.82534 9.48107 10.95574 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.003300 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.722589 B = 8482.200370 C =10046.402744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.081 3.919 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.553 4.553 11 S 2.604 3.396 12 O -0.974 6.974 13 O -0.945 6.945 14 N -1.010 6.010 15 C 0.116 3.884 16 C -0.131 4.131 17 C -0.115 4.115 18 C -0.100 4.100 19 H 0.080 0.920 20 C -0.106 4.106 21 C -0.114 4.114 22 C 0.476 3.524 23 O -0.514 6.514 24 O -0.521 6.521 25 C 0.123 3.877 26 C -0.211 4.211 27 C -0.139 4.139 28 H 0.263 0.737 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.409 0.591 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.086 0.914 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -11.582 16.444 20.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.123 4.123 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.551 4.551 8 H 0.086 0.914 9 C 0.040 3.960 10 C -0.686 4.686 11 S 2.703 3.297 12 O -0.964 6.964 13 O -0.935 6.935 14 N -0.846 5.846 15 C -0.009 4.009 16 C -0.170 4.170 17 C -0.152 4.152 18 C -0.120 4.120 19 H 0.098 0.902 20 C -0.144 4.144 21 C -0.152 4.152 22 C 0.319 3.681 23 O -0.401 6.401 24 O -0.334 6.334 25 C -0.003 4.003 26 C -0.249 4.249 27 C -0.179 4.179 28 H 0.073 0.927 29 H 0.150 0.850 30 H 0.115 0.885 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.267 0.733 42 H 0.116 0.884 43 H 0.084 0.916 44 H 0.105 0.895 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.019 -11.365 15.908 19.551 hybrid contribution -0.696 1.293 0.474 1.543 sum -0.676 -10.072 16.382 19.242 Atomic orbital electron populations 1.69972 1.06003 1.27263 1.47915 1.24945 0.94808 0.99181 0.93407 0.86659 0.79903 0.82442 0.79278 1.19916 1.21140 1.19428 1.20489 0.93336 0.88456 1.52783 0.91375 1.18293 0.99296 0.94264 0.84100 1.30025 1.16914 1.08435 1.13234 1.05275 0.76926 0.73658 0.73811 1.93476 1.69250 1.54851 1.78828 1.93530 1.71560 1.50400 1.78040 1.58108 1.79630 1.14905 1.31913 1.21374 0.99928 0.80375 0.99260 1.21851 1.01406 0.98990 0.94763 1.21625 1.01099 0.94595 0.97913 1.21425 1.01522 0.95092 0.93968 0.90171 1.21459 1.00832 1.00849 0.91234 1.21474 1.03376 1.00656 0.89651 1.23691 0.78273 0.81928 0.84241 1.90747 1.32048 1.31326 1.86026 1.84551 1.67425 1.62882 1.18498 1.21296 0.99678 0.94649 0.84631 1.23223 0.99090 0.96008 1.06545 1.22540 0.92146 1.01011 1.02163 0.92702 0.84955 0.88473 0.91889 0.88996 0.91039 0.91347 0.91627 0.91803 0.90242 0.90584 0.87420 0.87429 0.73276 0.88373 0.91610 0.89533 0.90688 0.91568 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.14 12.92 55.43 0.72 -23.42 16 2 C 0.08 2.22 5.39 -17.82 -0.10 2.13 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.08 8.01 -34.44 -0.28 -14.35 16 8 H 0.07 1.91 7.82 -52.49 -0.41 1.50 16 9 C 0.04 1.04 1.33 -155.66 -0.21 0.84 16 10 C -0.55 -11.61 6.03 37.16 0.22 -11.39 16 11 S 2.60 52.26 5.25 -107.50 -0.56 51.69 16 12 O -0.97 -20.90 16.59 -57.54 -0.95 -21.85 16 13 O -0.95 -22.18 16.02 -57.54 -0.92 -23.10 16 14 N -1.01 -15.20 3.23 -113.77 -0.37 -15.57 16 15 C 0.12 1.41 6.43 -3.71 -0.02 1.39 16 16 C -0.13 -1.29 6.08 -26.61 -0.16 -1.45 16 17 C -0.11 -0.99 4.95 -26.69 -0.13 -1.12 16 18 C -0.10 -1.05 2.32 -90.72 -0.21 -1.26 16 19 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.11 -0.99 3.98 -26.73 -0.11 -1.10 16 21 C -0.11 -0.84 5.57 -27.88 -0.16 -1.00 16 22 C 0.48 4.35 8.33 36.01 0.30 4.65 16 23 O -0.51 -6.54 16.74 -18.74 -0.31 -6.86 16 24 O -0.52 -3.58 13.42 -39.26 -0.53 -4.10 16 25 C 0.12 1.65 5.69 -3.93 -0.02 1.62 16 26 C -0.21 -4.65 9.96 -26.69 -0.27 -4.92 16 27 C -0.14 -3.19 9.43 -26.69 -0.25 -3.44 16 28 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 29 H 0.13 2.89 8.14 -51.92 -0.42 2.47 16 30 H 0.10 1.73 8.09 -51.92 -0.42 1.31 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.18 6.86 -51.93 -0.36 0.82 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.06 0.43 6.50 -51.93 -0.34 0.09 16 37 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 38 H 0.08 0.72 8.10 -51.93 -0.42 0.29 16 39 H 0.11 0.60 6.54 -51.93 -0.34 0.26 16 40 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.41 1.23 9.10 45.56 0.41 1.64 16 42 H 0.10 1.49 6.85 -51.93 -0.36 1.14 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 45 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 46 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 47 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 LS Contribution 392.53 15.07 5.92 5.92 Total: -1.00 -34.97 392.53 -10.28 -45.25 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.85 Total: 5.05 kcal Atomic # 6 Polarization: -28.02 SS G_CDS: -1.39 Total: -29.41 kcal Atomic # 7 Polarization: -39.34 SS G_CDS: 0.35 Total: -39.00 kcal Atomic # 8 Polarization: -53.19 SS G_CDS: -2.72 Total: -55.91 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 52.26 SS G_CDS: -0.56 Total: 51.69 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.97 -10.28 -45.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844796258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.160 kcal (2) G-P(sol) polarization free energy of solvation -34.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds