Wall clock time and date at job start Wed Apr 1 2020 03:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00024 * 2 1 4 4 H 1.48499 * 109.47237 * 240.00166 * 3 2 1 5 5 H 1.48502 * 109.47004 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47502 * 119.99691 * 3 2 1 7 7 C 1.37876 * 120.00306 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00105 * 185.91684 * 7 2 1 9 9 C 1.50700 * 119.99570 * 5.91279 * 7 2 1 10 10 C 1.53003 * 115.55033 * 275.02794 * 9 7 2 11 11 S 1.81403 * 109.47092 * 294.39529 * 10 9 7 12 12 O 1.42097 * 110.54130 * 293.32110 * 11 10 9 13 13 O 1.42099 * 110.54206 * 70.06912 * 11 10 9 14 14 N 1.65603 * 104.45006 * 181.69470 * 11 10 9 15 15 C 1.46924 * 120.62795 * 89.99739 * 14 11 10 16 16 C 1.53193 * 108.77109 * 126.37146 * 15 14 11 17 17 C 1.53038 * 109.31436 * 54.63399 * 16 15 14 18 18 C 1.53040 * 109.54044 * 298.63408 * 17 16 15 19 19 H 1.08999 * 109.49306 * 301.41620 * 18 17 16 20 20 C 1.53002 * 109.49943 * 181.34839 * 18 17 16 21 21 C 1.53002 * 109.46904 * 65.00205 * 20 18 17 22 22 C 1.50701 * 109.46566 * 179.97438 * 21 20 18 23 23 O 1.20818 * 120.00577 * 0.02562 * 22 21 20 24 24 O 1.34230 * 119.99369 * 179.97438 * 22 21 20 25 25 C 1.46925 * 120.63113 * 269.72292 * 14 11 10 26 26 C 1.52994 * 117.49859 * 129.36240 * 9 7 2 27 27 C 1.52996 * 117.50095 * 60.69540 * 9 7 2 28 28 H 0.97001 * 119.99948 * 354.97446 * 1 2 3 29 29 H 1.09000 * 109.47072 * 54.39338 * 10 9 7 30 30 H 1.09002 * 109.47158 * 174.39394 * 10 9 7 31 31 H 1.09001 * 109.58479 * 246.15518 * 15 14 11 32 32 H 1.08999 * 109.58819 * 6.58351 * 15 14 11 33 33 H 1.09000 * 109.49574 * 174.58104 * 16 15 14 34 34 H 1.09001 * 109.50185 * 294.64762 * 16 15 14 35 35 H 1.09008 * 109.46233 * 58.65501 * 17 16 15 36 36 H 1.09004 * 109.46026 * 178.61174 * 17 16 15 37 37 H 1.09003 * 109.46660 * 184.99823 * 20 18 17 38 38 H 1.09000 * 109.47223 * 305.00082 * 20 18 17 39 39 H 1.08999 * 109.46711 * 299.99515 * 21 20 18 40 40 H 1.09000 * 109.47280 * 59.99913 * 21 20 18 41 41 H 0.96710 * 116.99580 * 179.97438 * 24 22 21 42 42 H 1.09006 * 109.58614 * 353.41764 * 25 14 11 43 43 H 1.08998 * 109.59134 * 113.84187 * 25 14 11 44 44 H 1.09005 * 117.49834 * 359.97438 * 26 9 7 45 45 H 1.09002 * 117.50090 * 145.02161 * 26 9 7 46 46 H 1.08996 * 117.50323 * 214.97821 * 27 9 7 47 47 H 1.09001 * 117.49876 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0802 -1.1964 0.0969 9 6 1.2571 -2.4957 -0.1333 10 6 0.7026 -3.0753 1.1696 11 16 2.0774 -3.5408 2.2577 12 8 2.8101 -4.6230 1.7001 13 8 2.7396 -2.3829 2.7475 14 7 1.3453 -4.1888 3.5943 15 6 1.0504 -5.6265 3.6632 16 6 1.6589 -6.1934 4.9497 17 6 1.1494 -5.3892 6.1478 18 6 1.5881 -3.9296 6.0085 19 1 2.6753 -3.8808 5.9488 20 6 1.1070 -3.1335 7.2233 21 6 1.8093 -3.6486 8.4812 22 6 1.3359 -2.8640 9.6776 23 8 0.5202 -1.9837 9.5386 24 8 1.8198 -3.1440 10.8980 25 6 0.9839 -3.3380 4.7363 26 6 1.7437 -3.4838 -1.1952 27 6 0.4385 -2.7125 -1.4076 28 1 -0.4850 0.8368 0.0736 29 1 0.0839 -2.3274 1.6656 30 1 0.1002 -3.9563 0.9480 31 1 -0.0289 -5.7780 3.6718 32 1 1.4855 -6.1305 2.8002 33 1 1.3660 -7.2374 5.0613 34 1 2.7455 -6.1238 4.8998 35 1 0.0610 -5.4395 6.1827 36 1 1.5615 -5.8061 7.0668 37 1 1.3417 -2.0785 7.0823 38 1 0.0294 -3.2546 7.3335 39 1 1.5746 -4.7037 8.6221 40 1 2.8870 -3.5276 8.3711 41 1 1.4865 -2.6136 11.6347 42 1 1.3750 -2.3324 4.5811 43 1 -0.1010 -3.2991 4.8342 44 1 2.6042 -3.1921 -1.7974 45 1 1.6684 -4.5467 -0.9659 46 1 -0.4948 -3.2683 -1.3179 47 1 0.4403 -1.9134 -2.1490 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844796258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:57 Heat of formation + Delta-G solvation = -181.452623 kcal Electronic energy + Delta-G solvation = -29388.782926 eV Core-core repulsion = 25276.697354 eV Total energy + Delta-G solvation = -4112.085572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.24867 -39.73186 -38.57206 -38.01266 -37.13593 -36.77268 -35.45345 -34.09100 -32.77094 -31.08101 -29.84153 -27.50462 -26.34711 -25.36351 -23.14456 -23.00523 -21.91190 -21.34002 -20.86892 -19.62285 -19.01516 -18.52582 -18.33793 -17.52138 -17.12851 -17.00102 -16.78696 -16.61223 -15.83801 -15.56434 -15.47465 -15.20524 -14.96108 -14.84542 -14.38931 -14.16302 -13.93425 -13.76406 -13.66480 -13.29830 -13.14384 -12.97623 -12.90307 -12.86029 -12.79348 -12.64142 -12.51589 -12.44765 -12.24101 -12.14505 -11.92965 -11.85219 -11.68189 -11.58070 -11.54319 -11.34711 -11.12239 -10.91716 -10.55724 -10.11943 -9.67639 -8.19842 -6.34585 -0.52598 1.26776 1.37846 1.39829 1.47170 1.93212 2.22439 2.38855 3.00329 3.07196 3.33633 3.39903 3.63723 3.77246 3.90866 3.99080 4.08797 4.17244 4.25749 4.29469 4.40120 4.46674 4.49723 4.52741 4.58698 4.66395 4.73320 4.81131 4.83044 4.87651 4.93520 4.95160 4.97759 5.10546 5.16410 5.19803 5.30179 5.33465 5.44056 5.46058 5.57313 5.58206 5.68477 5.70506 5.78886 6.21578 6.71241 7.03857 7.37391 8.87021 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.012588 B = 0.003300 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2223.722589 B = 8482.200370 C =10046.402744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.042 3.958 3 Si 0.934 3.066 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.532 4.532 8 H 0.048 0.952 9 C 0.010 3.990 10 C -0.553 4.553 11 S 2.619 3.381 12 O -0.991 6.991 13 O -0.989 6.989 14 N -1.001 6.001 15 C 0.103 3.897 16 C -0.130 4.130 17 C -0.111 4.111 18 C -0.094 4.094 19 H 0.070 0.930 20 C -0.100 4.100 21 C -0.111 4.111 22 C 0.481 3.519 23 O -0.558 6.558 24 O -0.516 6.516 25 C 0.113 3.887 26 C -0.198 4.198 27 C -0.138 4.138 28 H 0.265 0.735 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.077 0.923 39 H 0.137 0.863 40 H 0.120 0.880 41 H 0.425 0.575 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.087 0.913 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.324 -13.874 18.107 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.161 4.161 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.570 4.570 8 H 0.066 0.934 9 C 0.008 3.992 10 C -0.685 4.685 11 S 2.718 3.282 12 O -0.981 6.981 13 O -0.979 6.979 14 N -0.840 5.840 15 C -0.022 4.022 16 C -0.169 4.169 17 C -0.148 4.148 18 C -0.114 4.114 19 H 0.088 0.912 20 C -0.139 4.139 21 C -0.148 4.148 22 C 0.326 3.674 23 O -0.449 6.449 24 O -0.329 6.329 25 C -0.012 4.012 26 C -0.236 4.236 27 C -0.177 4.177 28 H 0.074 0.926 29 H 0.136 0.864 30 H 0.147 0.853 31 H 0.108 0.892 32 H 0.101 0.899 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.138 0.862 41 H 0.287 0.713 42 H 0.087 0.913 43 H 0.103 0.897 44 H 0.101 0.899 45 H 0.118 0.882 46 H 0.106 0.894 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.618 -13.664 17.568 22.265 hybrid contribution -0.481 1.949 0.022 2.008 sum -1.099 -11.715 17.589 21.162 Atomic orbital electron populations 1.70022 1.06596 1.27813 1.48532 1.25514 0.95624 1.01536 0.93410 0.85974 0.79149 0.79952 0.78980 1.19236 1.19835 1.20258 1.20676 0.92784 0.90553 1.52951 0.93375 1.18422 1.00559 0.94227 0.86000 1.29937 1.17478 1.09172 1.11954 1.04493 0.76730 0.72729 0.74267 1.93440 1.69992 1.54887 1.79766 1.93470 1.73020 1.52533 1.78922 1.57712 1.79384 1.16467 1.30446 1.21774 1.01882 0.78030 1.00467 1.21891 1.00480 1.00725 0.93806 1.21653 1.02058 0.92475 0.98608 1.21366 1.00711 0.96775 0.92598 0.91199 1.21347 1.01162 0.99479 0.91900 1.21499 1.03704 1.01731 0.87826 1.23967 0.77284 0.81097 0.85101 1.90741 1.34195 1.33311 1.86694 1.84513 1.66966 1.62963 1.18462 1.21520 1.00959 0.93408 0.85339 1.23269 0.98470 0.96900 1.04923 1.22495 0.93436 1.00847 1.00885 0.92580 0.86359 0.85256 0.89163 0.89868 0.88021 0.92717 0.90281 0.88937 0.92549 0.90421 0.84569 0.86189 0.71346 0.91250 0.89713 0.89912 0.88219 0.89433 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.93 12.92 21.45 0.28 -49.65 16 2 C 0.04 2.33 5.39 84.65 0.46 2.79 16 3 Si 0.93 44.68 29.54 68.60 2.03 46.71 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 7 C -0.53 -29.99 8.01 25.60 0.21 -29.79 16 8 H 0.05 2.82 7.82 -2.91 -0.02 2.79 16 9 C 0.01 0.49 1.33 -52.93 -0.07 0.42 16 10 C -0.55 -23.17 6.03 71.98 0.43 -22.74 16 11 S 2.62 106.18 5.25 -56.49 -0.30 105.88 16 12 O -0.99 -42.37 16.59 -127.65 -2.12 -44.49 16 13 O -0.99 -48.40 16.02 -127.65 -2.05 -50.44 16 14 N -1.00 -29.31 3.23 -513.85 -1.66 -30.97 16 15 C 0.10 2.24 6.43 86.36 0.56 2.79 16 16 C -0.13 -2.12 6.08 30.67 0.19 -1.93 16 17 C -0.11 -1.48 4.95 30.62 0.15 -1.33 16 18 C -0.09 -1.83 2.32 -10.86 -0.03 -1.85 16 19 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 20 C -0.10 -1.76 3.98 30.60 0.12 -1.64 16 21 C -0.11 -1.36 5.57 29.85 0.17 -1.19 16 22 C 0.48 7.97 8.33 71.24 0.59 8.57 16 23 O -0.56 -13.95 16.74 21.99 0.37 -13.58 16 24 O -0.52 -5.89 13.42 -51.42 -0.69 -6.58 16 25 C 0.11 2.98 5.69 86.22 0.49 3.47 16 26 C -0.20 -8.61 9.96 30.62 0.30 -8.31 16 27 C -0.14 -6.25 9.43 30.62 0.29 -5.96 16 28 H 0.27 14.12 8.32 -92.71 -0.77 13.35 16 29 H 0.12 5.27 8.14 -2.39 -0.02 5.25 16 30 H 0.13 4.41 8.09 -2.39 -0.02 4.39 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.08 1.97 6.86 -2.39 -0.02 1.95 16 33 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 35 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.09 0.77 6.50 -2.39 -0.02 0.75 16 37 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 38 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 39 H 0.14 0.92 6.54 -2.39 -0.02 0.91 16 40 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.43 1.72 9.10 -74.05 -0.67 1.04 16 42 H 0.07 2.23 6.85 -2.38 -0.02 2.21 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.08 3.60 8.14 -2.38 -0.02 3.58 16 45 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 46 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 47 H 0.07 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -77.75 392.53 0.02 -77.72 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.30 Total: 22.10 kcal Atomic # 6 Polarization: -60.57 SS G_CDS: 3.86 Total: -56.71 kcal Atomic # 7 Polarization: -79.24 SS G_CDS: -1.38 Total: -80.62 kcal Atomic # 8 Polarization: -110.60 SS G_CDS: -4.48 Total: -115.09 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 106.18 SS G_CDS: -0.30 Total: 105.88 kcal Total: -77.75 0.02 -77.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844796258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.729 kcal (2) G-P(sol) polarization free energy of solvation -77.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds