Wall clock time and date at job start Wed Apr 1 2020 02:52:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00435 * 2 1 4 4 H 1.48498 * 109.47411 * 270.00265 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00283 * 3 2 1 6 6 H 1.48498 * 109.47274 * 150.00062 * 3 2 1 7 7 C 1.37886 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99539 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00182 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.42907 * 114.00038 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47325 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.46429 * 65.00746 * 12 11 10 14 14 C 1.42899 * 113.99649 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47405 * 179.97438 * 14 13 12 16 16 O 1.45198 * 109.46884 * 64.99626 * 15 14 13 17 17 C 1.34719 * 117.00054 * 179.97438 * 16 15 14 18 18 O 1.21463 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.47767 * 119.99821 * 180.02562 * 17 16 15 20 20 C 1.40641 * 119.73923 * 359.97438 * 19 17 16 21 21 C 1.35845 * 120.94895 * 179.97438 * 20 19 17 22 22 C 1.40495 * 119.88713 * 0.02562 * 21 20 19 23 23 C 1.40490 * 121.83956 * 180.02562 * 22 21 20 24 24 N 1.31209 * 119.94039 * 179.97438 * 23 22 21 25 25 C 1.32552 * 122.81089 * 0.02562 * 24 23 22 26 26 C 1.36222 * 121.84256 * 359.97438 * 25 24 23 27 27 C 1.40754 * 118.67525 * 0.02562 * 26 25 24 28 28 C 1.38588 * 119.73392 * 179.73185 * 19 17 16 29 29 H 0.97003 * 119.99347 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47209 * 60.00149 * 9 7 2 31 31 H 1.09005 * 109.47056 * 300.00515 * 9 7 2 32 32 H 1.09005 * 109.46610 * 60.00568 * 11 10 9 33 33 H 1.08995 * 109.47386 * 300.00729 * 11 10 9 34 34 H 1.08990 * 109.47090 * 305.00772 * 12 11 10 35 35 H 1.08992 * 109.46809 * 185.00065 * 12 11 10 36 36 H 1.09002 * 109.47445 * 59.99875 * 14 13 12 37 37 H 1.09002 * 109.47167 * 299.99793 * 14 13 12 38 38 H 1.09002 * 109.47398 * 184.99964 * 15 14 13 39 39 H 1.09001 * 109.47194 * 305.00145 * 15 14 13 40 40 H 1.08000 * 119.52539 * 0.02562 * 20 19 17 41 41 H 1.07997 * 120.05480 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.02930 * 359.95515 * 23 22 21 43 43 H 1.08004 * 119.07998 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.65972 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.36449 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8755 0.0000 12 6 2.6478 -5.9564 -0.0006 13 8 3.3879 -5.8897 1.2200 14 6 4.4303 -6.8619 1.3214 15 6 5.1521 -6.6980 2.6604 16 8 4.2357 -7.0028 3.7447 17 6 4.7182 -6.9063 4.9987 18 8 5.8728 -6.5761 5.1814 19 6 3.8430 -7.2021 6.1520 20 6 2.5069 -7.5834 5.9340 21 6 1.6809 -7.8614 6.9761 22 6 2.1602 -7.7686 8.2934 23 6 1.3422 -8.0473 9.4011 24 7 1.8288 -7.9492 10.6157 25 6 3.0815 -7.5921 10.8610 26 6 3.9554 -7.3009 9.8574 27 6 3.5067 -7.3836 8.5259 28 6 4.3467 -7.1064 7.4395 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 0.9445 -4.9827 -0.8898 33 1 0.9450 -4.9823 0.8902 34 1 3.3208 -5.7959 -0.8428 35 1 2.1817 -6.9375 -0.0898 36 1 5.1402 -6.7198 0.5066 37 1 4.0015 -7.8622 1.2594 38 1 6.0021 -7.3792 2.7008 39 1 5.5042 -5.6713 2.7602 40 1 2.1324 -7.6570 4.9237 41 1 0.6575 -8.1533 6.7921 42 1 0.3137 -8.3416 9.2530 43 1 3.4188 -7.5303 11.8851 44 1 4.9722 -7.0123 10.0790 45 1 5.3740 -6.8168 7.6037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861320681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:37 Heat of formation + Delta-G solvation = -124.615048 kcal Electronic energy + Delta-G solvation = -28077.492561 eV Core-core repulsion = 23832.427700 eV Total energy + Delta-G solvation = -4245.064861 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.36628 -40.44210 -38.19197 -37.58439 -36.69236 -36.15880 -33.47693 -32.74984 -32.09258 -30.95285 -30.08903 -28.92108 -26.76641 -25.83150 -24.20480 -23.18229 -22.57657 -22.40996 -21.92829 -21.53370 -19.00176 -17.97653 -17.47789 -17.13497 -16.89640 -16.43612 -16.33142 -16.08077 -16.00984 -15.36911 -14.97247 -14.70728 -14.65317 -14.41298 -14.20286 -14.11138 -14.07879 -13.54385 -13.38315 -13.18733 -12.88235 -12.69527 -12.40623 -12.13079 -11.79472 -11.64007 -11.53920 -11.18798 -10.89072 -10.82642 -10.78298 -10.76766 -10.70233 -10.50310 -9.99667 -9.95449 -9.59539 -9.52928 -9.08489 -8.81923 -8.56325 -8.15839 -6.09386 -4.10547 -0.30165 0.23687 1.36271 1.95913 2.33329 2.84735 3.31577 3.36439 3.42541 3.61964 3.67947 3.96046 4.06805 4.18568 4.30490 4.36059 4.37861 4.55641 4.63570 4.73410 4.85015 4.85425 4.96768 5.09371 5.14050 5.20511 5.23225 5.27127 5.31964 5.38821 5.45924 5.52624 5.57904 5.63233 5.81173 5.84075 5.99638 6.00495 6.13634 6.17074 6.21474 6.26391 7.10476 7.29372 7.44645 7.48025 7.51341 7.81524 8.16973 8.59386 9.02797 9.54039 11.02264 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.002047 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.822592 B =13678.104869 C =14989.173006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.061 3.939 15 C 0.072 3.928 16 O -0.339 6.339 17 C 0.508 3.492 18 O -0.505 6.505 19 C -0.096 4.096 20 C -0.074 4.074 21 C -0.094 4.094 22 C -0.091 4.091 23 C 0.144 3.856 24 N -0.481 5.481 25 C 0.072 3.928 26 C -0.141 4.141 27 C -0.040 4.040 28 C -0.037 4.037 29 H 0.264 0.736 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.168 0.832 43 H 0.156 0.844 44 H 0.142 0.858 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.200 -22.678 15.286 28.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.016 4.016 15 C -0.002 4.002 16 O -0.255 6.255 17 C 0.352 3.648 18 O -0.394 6.394 19 C -0.099 4.099 20 C -0.092 4.092 21 C -0.114 4.114 22 C -0.093 4.093 23 C -0.028 4.028 24 N -0.189 5.189 25 C -0.071 4.071 26 C -0.161 4.161 27 C -0.045 4.045 28 C -0.055 4.055 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.165 0.835 41 H 0.161 0.839 42 H 0.185 0.815 43 H 0.173 0.827 44 H 0.160 0.840 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.144 -22.429 16.255 28.373 hybrid contribution 0.801 0.978 -1.073 1.658 sum 6.945 -21.451 15.182 27.182 Atomic orbital electron populations 1.69966 1.06088 1.27119 1.50688 1.24955 0.94995 0.99436 0.95196 0.86334 0.79711 0.82248 0.78196 1.20474 1.21064 1.19621 1.21059 0.94077 0.89358 1.50623 0.91564 1.20207 0.88787 0.83648 0.95346 1.87910 1.35195 1.12655 1.95164 1.22255 0.93687 0.85644 0.99865 1.22596 0.94056 0.97372 0.86778 1.88106 1.46994 1.54910 1.38677 1.22505 0.91371 0.93139 0.94564 1.23209 0.90904 1.03022 0.83056 1.86576 1.44350 1.79882 1.14675 1.21081 0.85992 0.74172 0.83510 1.90843 1.18600 1.43566 1.86398 1.19216 0.94413 1.05128 0.91109 1.21184 0.91704 0.95320 1.00962 1.20964 1.00540 0.99392 0.90493 1.19239 0.94106 1.00117 0.95806 1.23312 0.99537 0.93478 0.86478 1.67401 1.15208 1.11966 1.24322 1.22227 0.88748 0.96228 0.99907 1.21998 1.01669 1.00535 0.91893 1.18067 0.93271 0.99220 0.93923 1.21454 1.00084 0.94035 0.89928 0.92681 0.97762 0.97642 0.92951 0.93603 0.92664 0.92667 0.90842 0.92423 0.89613 0.89619 0.83549 0.83857 0.81500 0.82677 0.83975 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -15.45 9.43 -34.44 -0.32 -15.78 16 8 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 9 C 0.19 5.45 5.69 36.00 0.20 5.66 16 10 O -0.39 -9.70 10.29 -40.08 -0.41 -10.11 16 11 C 0.06 1.18 6.32 37.16 0.23 1.42 16 12 C 0.07 1.01 6.32 37.16 0.23 1.24 16 13 O -0.37 -5.94 10.28 -48.79 -0.50 -6.44 16 14 C 0.06 0.69 6.33 37.16 0.24 0.92 16 15 C 0.07 0.83 5.85 37.16 0.22 1.05 16 16 O -0.34 -4.32 9.40 -43.33 -0.41 -4.73 16 17 C 0.51 6.50 7.89 34.63 0.27 6.77 16 18 O -0.50 -7.41 16.09 -19.24 -0.31 -7.72 16 19 C -0.10 -1.04 5.87 -104.97 -0.62 -1.65 16 20 C -0.07 -0.67 9.51 -39.53 -0.38 -1.05 16 21 C -0.09 -0.72 9.77 -39.59 -0.39 -1.10 16 22 C -0.09 -0.78 5.75 -106.78 -0.61 -1.39 16 23 C 0.14 1.13 11.04 -16.97 -0.19 0.94 16 24 N -0.48 -4.43 10.29 -13.15 -0.14 -4.57 16 25 C 0.07 0.55 11.07 -17.97 -0.20 0.36 16 26 C -0.14 -1.06 9.88 -39.36 -0.39 -1.45 16 27 C -0.04 -0.36 5.74 -106.83 -0.61 -0.98 16 28 C -0.04 -0.36 9.38 -38.76 -0.36 -0.72 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 30 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.15 1.24 7.56 -52.49 -0.40 0.85 16 41 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 43 H 0.16 0.80 8.06 -52.48 -0.42 0.37 16 44 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.15 1.30 7.62 -52.49 -0.40 0.90 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -36.80 396.75 -9.10 -45.90 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -6.26 Total: -4.76 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.77 Total: -4.24 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.60 Total: -31.07 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -1.63 Total: -29.00 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.80 -9.10 -45.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861320681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.718 kcal (2) G-P(sol) polarization free energy of solvation -36.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds