Wall clock time and date at job start Wed Apr 1 2020 02:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 120.00435 * 2 1 4 4 H 1.48498 * 109.47411 * 270.00265 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00283 * 3 2 1 6 6 H 1.48498 * 109.47274 * 150.00062 * 3 2 1 7 7 C 1.37886 * 119.99526 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99539 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00182 * 359.97438 * 7 2 1 10 10 O 1.42894 * 109.46995 * 180.02562 * 9 7 2 11 11 C 1.42907 * 114.00038 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47325 * 179.97438 * 11 10 9 13 13 O 1.42901 * 109.46429 * 65.00746 * 12 11 10 14 14 C 1.42899 * 113.99649 * 180.02562 * 13 12 11 15 15 C 1.53000 * 109.47405 * 179.97438 * 14 13 12 16 16 O 1.45198 * 109.46884 * 64.99626 * 15 14 13 17 17 C 1.34719 * 117.00054 * 179.97438 * 16 15 14 18 18 O 1.21463 * 119.99677 * 0.02562 * 17 16 15 19 19 C 1.47767 * 119.99821 * 180.02562 * 17 16 15 20 20 C 1.40641 * 119.73923 * 359.97438 * 19 17 16 21 21 C 1.35845 * 120.94895 * 179.97438 * 20 19 17 22 22 C 1.40495 * 119.88713 * 0.02562 * 21 20 19 23 23 C 1.40490 * 121.83956 * 180.02562 * 22 21 20 24 24 N 1.31209 * 119.94039 * 179.97438 * 23 22 21 25 25 C 1.32552 * 122.81089 * 0.02562 * 24 23 22 26 26 C 1.36222 * 121.84256 * 359.97438 * 25 24 23 27 27 C 1.40754 * 118.67525 * 0.02562 * 26 25 24 28 28 C 1.38588 * 119.73392 * 179.73185 * 19 17 16 29 29 H 0.97003 * 119.99347 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47209 * 60.00149 * 9 7 2 31 31 H 1.09005 * 109.47056 * 300.00515 * 9 7 2 32 32 H 1.09005 * 109.46610 * 60.00568 * 11 10 9 33 33 H 1.08995 * 109.47386 * 300.00729 * 11 10 9 34 34 H 1.08990 * 109.47090 * 305.00772 * 12 11 10 35 35 H 1.08992 * 109.46809 * 185.00065 * 12 11 10 36 36 H 1.09002 * 109.47445 * 59.99875 * 14 13 12 37 37 H 1.09002 * 109.47167 * 299.99793 * 14 13 12 38 38 H 1.09002 * 109.47398 * 184.99964 * 15 14 13 39 39 H 1.09001 * 109.47194 * 305.00145 * 15 14 13 40 40 H 1.08000 * 119.52539 * 0.02562 * 20 19 17 41 41 H 1.07997 * 120.05480 * 180.02562 * 21 20 19 42 42 H 1.08001 * 120.02930 * 359.95515 * 23 22 21 43 43 H 1.08004 * 119.07998 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.65972 * 180.02562 * 26 25 24 45 45 H 1.07995 * 120.36449 * 0.02562 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 2.1795 -3.5853 -0.0005 11 6 1.5649 -4.8755 0.0000 12 6 2.6478 -5.9564 -0.0006 13 8 3.3879 -5.8897 1.2200 14 6 4.4303 -6.8619 1.3214 15 6 5.1521 -6.6980 2.6604 16 8 4.2357 -7.0028 3.7447 17 6 4.7182 -6.9063 4.9987 18 8 5.8728 -6.5761 5.1814 19 6 3.8430 -7.2021 6.1520 20 6 2.5069 -7.5834 5.9340 21 6 1.6809 -7.8614 6.9761 22 6 2.1602 -7.7686 8.2934 23 6 1.3422 -8.0473 9.4011 24 7 1.8288 -7.9492 10.6157 25 6 3.0815 -7.5921 10.8610 26 6 3.9554 -7.3009 9.8574 27 6 3.5067 -7.3836 8.5259 28 6 4.3467 -7.1064 7.4395 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8903 31 1 0.6245 -2.5571 0.8897 32 1 0.9445 -4.9827 -0.8898 33 1 0.9450 -4.9823 0.8902 34 1 3.3208 -5.7959 -0.8428 35 1 2.1817 -6.9375 -0.0898 36 1 5.1402 -6.7198 0.5066 37 1 4.0015 -7.8622 1.2594 38 1 6.0021 -7.3792 2.7008 39 1 5.5042 -5.6713 2.7602 40 1 2.1324 -7.6570 4.9237 41 1 0.6575 -8.1533 6.7921 42 1 0.3137 -8.3416 9.2530 43 1 3.4188 -7.5303 11.8851 44 1 4.9722 -7.0123 10.0790 45 1 5.3740 -6.8168 7.6037 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861320681.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:36 Heat of formation + Delta-G solvation = -147.569487 kcal Electronic energy + Delta-G solvation = -28078.487940 eV Core-core repulsion = 23832.427700 eV Total energy + Delta-G solvation = -4246.060240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08434 -41.31218 -39.37446 -38.44926 -38.05416 -37.42024 -34.95186 -34.09728 -32.88094 -32.04311 -30.71347 -30.34337 -28.77070 -26.60754 -24.83437 -24.55633 -23.97091 -23.37048 -23.29005 -22.39788 -19.79536 -18.68652 -18.63665 -18.42277 -18.14072 -17.68355 -17.49563 -17.24617 -16.98095 -16.64340 -16.08116 -15.97458 -15.93370 -15.74118 -15.32343 -14.84316 -14.80581 -14.66615 -14.52450 -14.21008 -13.84331 -13.65204 -13.50972 -13.34149 -13.12474 -13.11864 -12.77033 -12.70493 -12.45285 -12.25849 -12.15037 -11.92333 -11.80470 -11.65836 -11.31973 -11.30781 -10.89525 -10.57792 -10.55707 -10.30622 -10.24439 -9.18031 -8.33971 -6.46079 -0.99362 -0.41925 0.69158 1.16306 1.37949 1.41053 1.45298 1.53118 2.09965 2.33326 2.65836 2.98303 2.99494 3.19925 3.37584 3.43104 3.49725 3.67321 3.74737 3.84480 3.93730 3.97148 4.07083 4.17665 4.24136 4.27869 4.34202 4.46997 4.52285 4.57005 4.60200 4.64327 4.68936 4.71283 4.77518 4.87296 4.89905 5.01427 5.13094 5.13763 5.16792 5.27065 5.53001 5.54372 5.65493 5.94599 6.26136 6.51186 6.53196 6.81278 6.92339 7.25703 8.78397 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.009555 B = 0.002047 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.822592 B =13678.104869 C =14989.173006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.264 1.264 5 H -0.273 1.273 6 H -0.268 1.268 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.208 3.792 10 O -0.409 6.409 11 C 0.048 3.952 12 C 0.075 3.925 13 O -0.408 6.408 14 C 0.060 3.940 15 C 0.066 3.934 16 O -0.345 6.345 17 C 0.506 3.494 18 O -0.533 6.533 19 C -0.115 4.115 20 C -0.087 4.087 21 C -0.081 4.081 22 C -0.102 4.102 23 C 0.144 3.856 24 N -0.504 5.504 25 C 0.065 3.935 26 C -0.145 4.145 27 C -0.055 4.055 28 C -0.040 4.040 29 H 0.271 0.729 30 H -0.008 1.008 31 H -0.017 1.017 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.150 0.850 41 H 0.176 0.824 42 H 0.197 0.803 43 H 0.179 0.821 44 H 0.163 0.837 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.180 -23.360 15.578 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.197 1.197 6 H -0.192 1.192 7 C -0.587 4.587 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.329 6.329 11 C -0.028 4.028 12 C -0.001 4.001 13 O -0.328 6.328 14 C -0.016 4.016 15 C -0.007 4.007 16 O -0.261 6.261 17 C 0.353 3.647 18 O -0.424 6.424 19 C -0.117 4.117 20 C -0.105 4.105 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.027 4.027 24 N -0.212 5.212 25 C -0.077 4.077 26 C -0.164 4.164 27 C -0.060 4.060 28 C -0.058 4.058 29 H 0.080 0.920 30 H 0.009 0.991 31 H 0.001 0.999 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.168 0.832 41 H 0.193 0.807 42 H 0.214 0.786 43 H 0.196 0.804 44 H 0.181 0.819 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 6.116 -23.145 16.538 29.097 hybrid contribution 0.760 1.078 -1.097 1.716 sum 6.876 -22.067 15.441 27.797 Atomic orbital electron populations 1.70065 1.07661 1.28676 1.50417 1.25967 0.96028 1.03361 0.93903 0.85192 0.78262 0.77032 0.78982 1.18934 1.19747 1.19243 1.21386 0.94003 0.91018 1.52342 0.92331 1.19827 0.88615 0.84699 0.93524 1.87858 1.35400 1.14381 1.95222 1.22694 0.95711 0.83921 1.00508 1.22595 0.93314 0.97538 0.86648 1.88043 1.48489 1.57011 1.39285 1.22749 0.90834 0.93359 0.94639 1.23368 0.91767 1.02372 0.83214 1.86577 1.44811 1.79722 1.14952 1.21500 0.85935 0.73362 0.83931 1.90813 1.19782 1.45127 1.86707 1.19284 0.95073 1.06702 0.90662 1.21265 0.91297 0.96272 1.01714 1.21292 1.01628 0.97576 0.89568 1.19492 0.94127 1.00207 0.96587 1.23789 1.00635 0.92528 0.85797 1.67460 1.16001 1.12728 1.24991 1.22652 0.88421 0.95516 1.01109 1.22248 1.02783 1.00212 0.91158 1.18305 0.93748 0.99552 0.94421 1.21527 1.00374 0.94019 0.89894 0.91970 0.99062 0.99937 0.91167 0.94062 0.91976 0.88278 0.88775 0.89668 0.87086 0.91991 0.83220 0.80668 0.78638 0.80424 0.81896 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.55 -33.85 9.43 25.60 0.24 -33.61 16 8 H 0.06 3.60 7.81 -2.91 -0.02 3.57 16 9 C 0.21 12.09 5.69 71.23 0.41 12.49 16 10 O -0.41 -20.82 10.29 -144.35 -1.49 -22.31 16 11 C 0.05 1.80 6.32 71.98 0.45 2.26 16 12 C 0.07 2.08 6.32 71.98 0.45 2.54 16 13 O -0.41 -12.87 10.28 -136.02 -1.40 -14.27 16 14 C 0.06 1.25 6.33 71.98 0.46 1.71 16 15 C 0.07 1.52 5.85 71.98 0.42 1.94 16 16 O -0.34 -8.91 9.40 -53.62 -0.50 -9.41 16 17 C 0.51 13.43 7.89 70.34 0.56 13.99 16 18 O -0.53 -16.31 16.09 19.96 0.32 -15.99 16 19 C -0.11 -2.54 5.87 -20.09 -0.12 -2.66 16 20 C -0.09 -1.58 9.51 22.30 0.21 -1.36 16 21 C -0.08 -1.13 9.77 22.26 0.22 -0.91 16 22 C -0.10 -1.64 5.75 -21.26 -0.12 -1.76 16 23 C 0.14 2.01 11.04 85.33 0.94 2.95 16 24 N -0.50 -8.55 10.29 -195.50 -2.01 -10.56 16 25 C 0.07 0.92 11.07 84.11 0.93 1.86 16 26 C -0.14 -2.04 9.88 22.42 0.22 -1.82 16 27 C -0.06 -0.98 5.74 -21.29 -0.12 -1.11 16 28 C -0.04 -0.79 9.38 22.80 0.21 -0.58 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H -0.02 -1.04 8.14 -2.38 -0.02 -1.06 16 32 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.15 2.51 7.56 -2.91 -0.02 2.49 16 41 H 0.18 1.18 8.06 -2.91 -0.02 1.15 16 42 H 0.20 1.36 8.06 -2.91 -0.02 1.33 16 43 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 44 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 45 H 0.15 2.77 7.62 -2.91 -0.02 2.75 16 Total: -1.00 -81.45 396.75 4.05 -77.39 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: 1.00 Total: 7.35 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.83 Total: -3.25 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.73 Total: -66.94 kcal Atomic # 8 Polarization: -58.91 SS G_CDS: -3.07 Total: -61.97 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -81.45 4.05 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861320681.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.178 kcal (2) G-P(sol) polarization free energy of solvation -81.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds