Wall clock time and date at job start Wed Apr 1 2020 04:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34238 * 116.99856 * 2 1 4 4 O 1.20825 * 120.00088 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99698 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46807 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46859 * 299.99747 * 6 5 3 8 8 N 1.46503 * 109.46902 * 180.02562 * 6 5 3 9 9 S 1.65601 * 120.00443 * 37.98994 * 8 6 5 10 10 O 1.42101 * 104.27591 * 302.93392 * 9 8 6 11 11 O 1.42092 * 104.27914 * 175.07309 * 9 8 6 12 12 C 1.81395 * 104.44709 * 59.00042 * 9 8 6 13 13 C 1.53000 * 109.47234 * 171.91561 * 12 9 8 14 14 C 1.50702 * 115.54930 * 304.93906 * 13 12 9 15 15 H 1.08002 * 120.00262 * 95.22090 * 14 13 12 16 16 C 1.37878 * 119.99537 * 274.94452 * 14 13 12 17 17 N 1.31512 * 120.00199 * 355.75571 * 16 14 13 18 18 Si 1.86803 * 119.99598 * 175.75305 * 16 14 13 19 19 H 1.48497 * 109.47166 * 60.00298 * 18 16 14 20 20 H 1.48506 * 109.47044 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47374 * 299.99929 * 18 16 14 22 22 C 1.53000 * 117.49900 * 90.60490 * 13 12 9 23 23 C 1.52999 * 117.50079 * 159.26643 * 13 12 9 24 24 C 1.52992 * 109.47168 * 60.00103 * 6 5 3 25 25 C 1.53005 * 117.49865 * 244.15289 * 24 6 5 26 26 C 1.52998 * 117.49649 * 175.49405 * 24 6 5 27 27 H 1.09004 * 109.47390 * 59.99189 * 1 2 3 28 28 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46925 * 299.99884 * 1 2 3 30 30 H 1.09001 * 109.47348 * 60.00598 * 5 3 2 31 31 H 1.08999 * 109.47190 * 299.99954 * 5 3 2 32 32 H 1.09001 * 109.47360 * 300.00024 * 7 6 5 33 33 H 1.09002 * 109.47286 * 60.00402 * 7 6 5 34 34 H 1.09002 * 109.47154 * 180.02562 * 7 6 5 35 35 H 0.96999 * 119.99285 * 217.99811 * 8 6 5 36 36 H 1.09004 * 109.47037 * 51.91633 * 12 9 8 37 37 H 1.08999 * 109.47455 * 291.91498 * 12 9 8 38 38 H 0.97008 * 119.99242 * 185.00370 * 17 16 14 39 39 H 1.09007 * 117.50002 * 215.00589 * 22 13 12 40 40 H 1.09003 * 117.49759 * 0.02562 * 22 13 12 41 41 H 1.08998 * 117.49670 * 359.97438 * 23 13 12 42 42 H 1.09004 * 117.49809 * 144.98193 * 23 13 12 43 43 H 1.09001 * 115.55457 * 29.82378 * 24 6 5 44 44 H 1.09009 * 117.49667 * 359.97438 * 25 24 6 45 45 H 1.08999 * 117.50195 * 145.02325 * 25 24 6 46 46 H 1.08997 * 117.50074 * 214.97481 * 26 24 6 47 47 H 1.08999 * 117.50226 * 0.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 6 3.4525 3.4365 -1.2484 8 7 5.4631 2.8188 -0.0010 9 16 6.3485 1.7342 -0.8853 10 8 5.9416 0.4651 -0.3923 11 8 7.6904 2.1792 -0.7438 12 6 5.7769 1.9674 -2.5910 13 6 6.6641 1.1602 -3.5410 14 6 8.1416 1.4418 -3.4472 15 1 8.7717 0.8196 -2.8290 16 6 8.6898 2.4901 -4.1553 17 7 7.9401 3.1923 -4.9766 18 14 10.4974 2.9132 -3.9479 19 1 11.3271 1.7447 -4.3371 20 1 10.8370 4.0719 -4.8124 21 1 10.7651 3.2598 -2.5289 22 6 6.2370 -0.2742 -3.8588 23 6 6.0959 0.8198 -4.9202 24 6 3.4536 3.4349 1.2501 25 6 2.4392 4.5622 1.0465 26 6 3.8675 4.8881 1.4903 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7811 -0.8909 31 1 3.9564 0.7806 0.8891 32 1 3.8419 2.9429 -2.1389 33 1 2.3640 3.3795 -1.2480 34 1 3.7619 4.4817 -1.2482 35 1 5.9131 3.5049 0.5163 36 1 5.8329 3.0243 -2.8516 37 1 4.7456 1.6256 -2.6786 38 1 8.3404 3.8823 -5.5286 39 1 7.0248 -1.0143 -4.0001 40 1 5.3238 -0.6427 -3.3914 41 1 5.0899 1.1705 -5.1506 42 1 6.7907 0.7997 -5.7598 43 1 3.3276 2.7964 2.1244 44 1 2.1616 4.8105 0.0221 45 1 1.6462 4.6655 1.7872 46 1 4.0135 5.2057 2.5227 47 1 4.5289 5.3507 0.7577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867702042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:03 Heat of formation + Delta-G solvation = -90.698359 kcal Electronic energy + Delta-G solvation = -30915.233343 eV Core-core repulsion = 26807.083171 eV Total energy + Delta-G solvation = -4108.150172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.89336 -38.91866 -36.77691 -36.36566 -36.36029 -35.10964 -34.53239 -32.00075 -30.81608 -28.98438 -28.08883 -27.07146 -25.46787 -23.93201 -22.30063 -21.38735 -21.20561 -19.78039 -19.41129 -18.55040 -17.83248 -17.22905 -16.61876 -16.50704 -16.04206 -15.85663 -15.38199 -15.11265 -14.69047 -14.63113 -14.41060 -13.85633 -13.55603 -13.49313 -13.23041 -13.08684 -12.51951 -12.20392 -12.07994 -12.03332 -11.85878 -11.67207 -11.51806 -11.27466 -11.19688 -11.09401 -10.98126 -10.87461 -10.82004 -10.76438 -10.51915 -10.46755 -10.34137 -10.18303 -10.05363 -9.90317 -9.68002 -9.29783 -9.02815 -8.50500 -8.10768 -6.09949 -4.21319 1.05101 2.17182 2.58906 3.34846 3.35991 3.38420 3.49376 3.91510 4.39054 4.42165 4.46430 4.57066 4.76236 4.92629 4.95919 4.99224 5.01098 5.03767 5.13311 5.16552 5.21896 5.28856 5.36730 5.47876 5.55841 5.65994 5.70305 5.79072 5.82766 5.92459 6.03918 6.08103 6.17272 6.19871 6.24843 6.32567 6.35258 6.52121 6.60518 6.68665 6.97967 7.18788 7.28342 7.44317 7.72460 7.83939 8.19783 8.83933 9.50704 10.96557 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004253 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.709537 B = 6582.025357 C = 7439.411842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.357 6.357 3 C 0.468 3.532 4 O -0.494 6.494 5 C -0.137 4.137 6 C 0.225 3.775 7 C -0.202 4.202 8 N -1.119 6.119 9 S 2.603 3.397 10 O -0.978 6.978 11 O -0.937 6.937 12 C -0.559 4.559 13 C 0.039 3.961 14 C -0.510 4.510 15 H 0.069 0.931 16 C 0.083 3.917 17 N -0.877 5.877 18 Si 0.889 3.111 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.212 4.212 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.148 4.148 26 C -0.185 4.185 27 H 0.063 0.937 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.127 0.873 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.416 0.584 36 H 0.133 0.867 37 H 0.100 0.900 38 H 0.263 0.737 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.559 -0.042 9.938 17.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.274 6.274 3 C 0.311 3.689 4 O -0.381 6.381 5 C -0.176 4.176 6 C 0.136 3.864 7 C -0.260 4.260 8 N -0.876 5.876 9 S 2.701 3.299 10 O -0.968 6.968 11 O -0.927 6.927 12 C -0.692 4.692 13 C 0.037 3.963 14 C -0.547 4.547 15 H 0.087 0.913 16 C -0.122 4.122 17 N -0.513 5.513 18 Si 0.716 3.284 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.250 4.250 23 C -0.172 4.172 24 C -0.165 4.165 25 C -0.185 4.185 26 C -0.223 4.223 27 H 0.081 0.919 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.145 0.855 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.088 0.912 35 H 0.250 0.750 36 H 0.151 0.849 37 H 0.118 0.882 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.111 0.889 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -14.214 -0.271 10.148 17.467 hybrid contribution 0.479 0.967 -0.247 1.107 sum -13.735 0.696 9.900 16.945 Atomic orbital electron populations 1.23246 0.76582 1.03573 1.02430 1.86553 1.23175 1.33499 1.84130 1.23494 0.91772 0.81331 0.72322 1.90614 1.67115 1.35591 1.44794 1.22220 0.88363 0.98202 1.08784 1.19156 0.79823 0.92004 0.95418 1.23076 1.04154 1.01938 0.96840 1.56110 1.13939 1.52099 1.65435 1.05219 0.73875 0.73697 0.77139 1.93521 1.83234 1.41358 1.78716 1.93584 1.32737 1.80762 1.85573 1.30222 1.07008 1.11063 1.20860 1.18307 0.93587 0.90289 0.94113 1.20474 0.89968 1.14208 1.30086 0.91324 1.24911 0.98172 0.94863 0.94232 1.69995 1.35463 1.22281 1.23542 0.86672 0.84749 0.77962 0.78998 1.20059 1.21312 1.19019 1.23221 1.01580 0.93424 1.06727 1.22491 0.99467 1.01161 0.94061 1.22271 1.04977 0.91246 0.98053 1.22968 0.91668 1.00848 1.03054 1.23049 0.99287 0.97559 1.02377 0.91873 0.88273 0.91998 0.86357 0.85459 0.91116 0.88599 0.91209 0.74980 0.84879 0.88210 0.92788 0.89542 0.91017 0.91727 0.89215 0.87893 0.87730 0.89359 0.88929 0.88422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.56 101.05 1.07 1.37 16 2 O -0.36 -4.31 10.57 -39.28 -0.41 -4.72 16 3 C 0.47 6.01 7.39 36.01 0.27 6.28 16 4 O -0.49 -6.46 11.12 -18.75 -0.21 -6.67 16 5 C -0.14 -1.88 3.47 -27.88 -0.10 -1.98 16 6 C 0.23 2.99 0.70 -131.82 -0.09 2.90 16 7 C -0.20 -2.64 6.81 37.16 0.25 -2.38 16 8 N -1.12 -16.73 5.38 0.54 0.00 -16.73 16 9 S 2.60 50.94 4.81 -107.50 -0.52 50.43 16 10 O -0.98 -19.71 14.60 -57.54 -0.84 -20.55 16 11 O -0.94 -22.26 16.58 -57.54 -0.95 -23.22 16 12 C -0.56 -11.21 4.14 37.16 0.15 -11.06 16 13 C 0.04 0.93 1.54 -155.66 -0.24 0.69 16 14 C -0.51 -13.75 6.98 -34.44 -0.24 -13.99 16 15 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 16 C 0.08 2.25 5.43 -17.82 -0.10 2.16 16 17 N -0.88 -23.93 12.66 55.43 0.70 -23.23 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.21 -4.50 9.93 -26.69 -0.26 -4.77 16 23 C -0.13 -2.97 9.18 -26.69 -0.25 -3.21 16 24 C -0.15 -1.69 4.15 -90.62 -0.38 -2.07 16 25 C -0.15 -1.58 8.12 -26.69 -0.22 -1.79 16 26 C -0.19 -1.91 9.26 -26.69 -0.25 -2.16 16 27 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 30 H 0.12 1.74 5.16 -51.93 -0.27 1.47 16 31 H 0.13 1.71 7.71 -51.93 -0.40 1.31 16 32 H 0.07 0.97 4.31 -51.93 -0.22 0.75 16 33 H 0.10 1.22 4.67 -51.93 -0.24 0.98 16 34 H 0.07 0.86 7.17 -51.93 -0.37 0.48 16 35 H 0.42 5.59 7.95 -34.47 -0.27 5.32 16 36 H 0.13 2.74 7.96 -51.92 -0.41 2.33 16 37 H 0.10 1.69 5.58 -51.92 -0.29 1.40 16 38 H 0.26 6.88 8.32 -40.82 -0.34 6.54 16 39 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.09 2.15 8.14 -51.93 -0.42 1.73 16 43 H 0.10 1.15 8.08 -51.93 -0.42 0.73 16 44 H 0.10 1.16 5.82 -51.92 -0.30 0.85 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.10 1.02 7.75 -51.93 -0.40 0.62 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -31.87 375.78 -8.92 -40.79 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -6.96 Total: 11.68 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: -0.38 Total: -30.02 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.70 Total: -39.95 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -2.42 Total: -55.16 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 50.94 SS G_CDS: -0.52 Total: 50.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.87 -8.92 -40.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867702042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.904 kcal (2) G-P(sol) polarization free energy of solvation -31.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds