Wall clock time and date at job start Wed Apr 1 2020 04:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34238 * 116.99856 * 2 1 4 4 O 1.20825 * 120.00088 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99698 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.46807 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.46859 * 299.99747 * 6 5 3 8 8 N 1.46503 * 109.46902 * 180.02562 * 6 5 3 9 9 S 1.65601 * 120.00443 * 37.98994 * 8 6 5 10 10 O 1.42101 * 104.27591 * 302.93392 * 9 8 6 11 11 O 1.42092 * 104.27914 * 175.07309 * 9 8 6 12 12 C 1.81395 * 104.44709 * 59.00042 * 9 8 6 13 13 C 1.53000 * 109.47234 * 171.91561 * 12 9 8 14 14 C 1.50702 * 115.54930 * 304.93906 * 13 12 9 15 15 H 1.08002 * 120.00262 * 95.22090 * 14 13 12 16 16 C 1.37878 * 119.99537 * 274.94452 * 14 13 12 17 17 N 1.31512 * 120.00199 * 355.75571 * 16 14 13 18 18 Si 1.86803 * 119.99598 * 175.75305 * 16 14 13 19 19 H 1.48497 * 109.47166 * 60.00298 * 18 16 14 20 20 H 1.48506 * 109.47044 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.47374 * 299.99929 * 18 16 14 22 22 C 1.53000 * 117.49900 * 90.60490 * 13 12 9 23 23 C 1.52999 * 117.50079 * 159.26643 * 13 12 9 24 24 C 1.52992 * 109.47168 * 60.00103 * 6 5 3 25 25 C 1.53005 * 117.49865 * 244.15289 * 24 6 5 26 26 C 1.52998 * 117.49649 * 175.49405 * 24 6 5 27 27 H 1.09004 * 109.47390 * 59.99189 * 1 2 3 28 28 H 1.09002 * 109.47211 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46925 * 299.99884 * 1 2 3 30 30 H 1.09001 * 109.47348 * 60.00598 * 5 3 2 31 31 H 1.08999 * 109.47190 * 299.99954 * 5 3 2 32 32 H 1.09001 * 109.47360 * 300.00024 * 7 6 5 33 33 H 1.09002 * 109.47286 * 60.00402 * 7 6 5 34 34 H 1.09002 * 109.47154 * 180.02562 * 7 6 5 35 35 H 0.96999 * 119.99285 * 217.99811 * 8 6 5 36 36 H 1.09004 * 109.47037 * 51.91633 * 12 9 8 37 37 H 1.08999 * 109.47455 * 291.91498 * 12 9 8 38 38 H 0.97008 * 119.99242 * 185.00370 * 17 16 14 39 39 H 1.09007 * 117.50002 * 215.00589 * 22 13 12 40 40 H 1.09003 * 117.49759 * 0.02562 * 22 13 12 41 41 H 1.08998 * 117.49670 * 359.97438 * 23 13 12 42 42 H 1.09004 * 117.49809 * 144.98193 * 23 13 12 43 43 H 1.09001 * 115.55457 * 29.82378 * 24 6 5 44 44 H 1.09009 * 117.49667 * 359.97438 * 25 24 6 45 45 H 1.08999 * 117.50195 * 145.02325 * 25 24 6 46 46 H 1.08997 * 117.50074 * 214.97481 * 26 24 6 47 47 H 1.08999 * 117.50226 * 0.02562 * 26 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7422 0.0002 7 6 3.4525 3.4365 -1.2484 8 7 5.4631 2.8188 -0.0010 9 16 6.3485 1.7342 -0.8853 10 8 5.9416 0.4651 -0.3923 11 8 7.6904 2.1792 -0.7438 12 6 5.7769 1.9674 -2.5910 13 6 6.6641 1.1602 -3.5410 14 6 8.1416 1.4418 -3.4472 15 1 8.7717 0.8196 -2.8290 16 6 8.6898 2.4901 -4.1553 17 7 7.9401 3.1923 -4.9766 18 14 10.4974 2.9132 -3.9479 19 1 11.3271 1.7447 -4.3371 20 1 10.8370 4.0719 -4.8124 21 1 10.7651 3.2598 -2.5289 22 6 6.2370 -0.2742 -3.8588 23 6 6.0959 0.8198 -4.9202 24 6 3.4536 3.4349 1.2501 25 6 2.4392 4.5622 1.0465 26 6 3.8675 4.8881 1.4903 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.9557 0.7811 -0.8909 31 1 3.9564 0.7806 0.8891 32 1 3.8419 2.9429 -2.1389 33 1 2.3640 3.3795 -1.2480 34 1 3.7619 4.4817 -1.2482 35 1 5.9131 3.5049 0.5163 36 1 5.8329 3.0243 -2.8516 37 1 4.7456 1.6256 -2.6786 38 1 8.3404 3.8823 -5.5286 39 1 7.0248 -1.0143 -4.0001 40 1 5.3238 -0.6427 -3.3914 41 1 5.0899 1.1705 -5.1506 42 1 6.7907 0.7997 -5.7598 43 1 3.3276 2.7964 2.1244 44 1 2.1616 4.8105 0.0221 45 1 1.6462 4.6655 1.7872 46 1 4.0135 5.2057 2.5227 47 1 4.5289 5.3507 0.7577 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867702042.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:02 Heat of formation + Delta-G solvation = -111.119483 kcal Electronic energy + Delta-G solvation = -30916.118870 eV Core-core repulsion = 26807.083171 eV Total energy + Delta-G solvation = -4109.035698 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85936 -39.88074 -38.55318 -37.95766 -37.28460 -36.76877 -35.59165 -34.03010 -31.95931 -30.28335 -29.33367 -27.94164 -27.44511 -24.93418 -23.12676 -22.94474 -22.34657 -21.44765 -20.60886 -20.01779 -18.92339 -18.40056 -18.31641 -17.51998 -17.26627 -16.90240 -16.82374 -16.59541 -16.43831 -15.78939 -15.66774 -15.53430 -14.96878 -14.44640 -14.38275 -14.17109 -13.89112 -13.71232 -13.39467 -13.16265 -13.09689 -13.05548 -12.88752 -12.85555 -12.78606 -12.64881 -12.45129 -12.37839 -12.16029 -12.04794 -11.95143 -11.77052 -11.69528 -11.46851 -11.28836 -11.06189 -10.92682 -10.85113 -10.58403 -10.44815 -9.87904 -8.14912 -6.28939 -0.49710 1.19677 1.38986 1.42989 1.52271 1.64781 2.05364 2.43266 2.94224 3.02243 3.12023 3.32460 3.39337 3.48055 3.59041 3.82112 3.99876 4.06081 4.12677 4.18763 4.27073 4.30568 4.36757 4.42303 4.47700 4.51996 4.54849 4.61896 4.77044 4.80177 4.85254 4.89246 4.91829 4.99702 5.10370 5.12839 5.21451 5.24956 5.34430 5.41132 5.45343 5.54986 5.65602 5.75997 6.11747 6.24571 6.76247 6.78389 7.43464 8.90758 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014635 B = 0.004253 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.709537 B = 6582.025357 C = 7439.411842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.369 6.369 3 C 0.473 3.527 4 O -0.498 6.498 5 C -0.144 4.144 6 C 0.223 3.777 7 C -0.202 4.202 8 N -1.105 6.105 9 S 2.618 3.382 10 O -0.987 6.987 11 O -0.985 6.985 12 C -0.555 4.555 13 C 0.007 3.993 14 C -0.523 4.523 15 H 0.048 0.952 16 C 0.045 3.955 17 N -0.893 5.893 18 Si 0.927 3.073 19 H -0.269 1.269 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.198 4.198 23 C -0.132 4.132 24 C -0.156 4.156 25 C -0.142 4.142 26 C -0.179 4.179 27 H 0.065 0.935 28 H 0.125 0.875 29 H 0.068 0.932 30 H 0.108 0.892 31 H 0.127 0.873 32 H 0.062 0.938 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.424 0.576 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.264 0.736 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.445 0.130 10.742 19.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.285 6.285 3 C 0.316 3.684 4 O -0.386 6.386 5 C -0.183 4.183 6 C 0.135 3.865 7 C -0.259 4.259 8 N -0.865 5.865 9 S 2.716 3.284 10 O -0.976 6.976 11 O -0.975 6.975 12 C -0.687 4.687 13 C 0.005 3.995 14 C -0.560 4.560 15 H 0.067 0.933 16 C -0.157 4.157 17 N -0.530 5.530 18 Si 0.753 3.247 19 H -0.194 1.194 20 H -0.200 1.200 21 H -0.203 1.203 22 C -0.235 4.235 23 C -0.171 4.171 24 C -0.176 4.176 25 C -0.180 4.180 26 C -0.217 4.217 27 H 0.084 0.916 28 H 0.143 0.857 29 H 0.086 0.914 30 H 0.126 0.874 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.260 0.740 36 H 0.144 0.856 37 H 0.149 0.851 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.119 0.881 45 H 0.116 0.884 46 H 0.126 0.874 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.098 -0.111 10.940 19.464 hybrid contribution 0.965 0.863 -0.448 1.370 sum -15.133 0.752 10.493 18.430 Atomic orbital electron populations 1.23557 0.74532 1.05520 1.02866 1.86528 1.25206 1.32941 1.83848 1.23194 0.91309 0.81602 0.72324 1.90603 1.67117 1.35748 1.45102 1.22211 0.89490 0.98241 1.08311 1.19308 0.78293 0.92276 0.96637 1.23075 1.04484 1.02192 0.96197 1.55701 1.14782 1.51587 1.64460 1.04512 0.73034 0.73825 0.77049 1.93508 1.83170 1.42251 1.78708 1.93519 1.36066 1.81657 1.86238 1.30120 1.08114 1.10066 1.20368 1.18430 0.92671 0.92603 0.95797 1.20637 0.91993 1.13945 1.29469 0.93341 1.25411 1.00801 0.95099 0.94405 1.70037 1.36240 1.22666 1.24060 0.86086 0.82069 0.78327 0.78261 1.19426 1.19993 1.20311 1.23288 1.02478 0.92310 1.05420 1.22416 0.99798 1.01916 0.92962 1.22242 1.06114 0.91858 0.97369 1.22988 0.92005 0.99783 1.03199 1.23131 0.99024 0.96246 1.03264 0.91650 0.85698 0.91364 0.87374 0.85515 0.91966 0.87982 0.90566 0.73963 0.85631 0.85051 0.92729 0.89940 0.88091 0.89693 0.91550 0.87391 0.88087 0.88379 0.87409 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.60 16 2 O -0.37 -8.16 10.57 -51.49 -0.54 -8.70 16 3 C 0.47 11.27 7.39 71.24 0.53 11.80 16 4 O -0.50 -11.95 11.12 21.97 0.24 -11.71 16 5 C -0.14 -3.74 3.47 29.85 0.10 -3.63 16 6 C 0.22 5.58 0.70 3.60 0.00 5.58 16 7 C -0.20 -4.91 6.81 71.98 0.49 -4.42 16 8 N -1.11 -32.00 5.38 -152.21 -0.82 -32.82 16 9 S 2.62 101.79 4.81 -56.49 -0.27 101.51 16 10 O -0.99 -39.14 14.60 -127.65 -1.86 -41.01 16 11 O -0.98 -47.62 16.58 -127.65 -2.12 -49.73 16 12 C -0.55 -21.84 4.14 71.98 0.30 -21.54 16 13 C 0.01 0.33 1.54 -52.93 -0.08 0.25 16 14 C -0.52 -28.61 6.98 25.60 0.18 -28.44 16 15 H 0.05 2.77 7.82 -2.91 -0.02 2.75 16 16 C 0.05 2.49 5.43 84.66 0.46 2.95 16 17 N -0.89 -49.01 12.66 21.45 0.27 -48.74 16 18 Si 0.93 44.58 29.54 68.60 2.03 46.60 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 21 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 22 C -0.20 -8.16 9.93 30.62 0.30 -7.85 16 23 C -0.13 -5.80 9.18 30.62 0.28 -5.52 16 24 C -0.16 -3.29 4.15 -10.80 -0.04 -3.34 16 25 C -0.14 -2.69 8.12 30.62 0.25 -2.44 16 26 C -0.18 -3.29 9.26 30.62 0.28 -3.00 16 27 H 0.06 0.92 8.13 -2.39 -0.02 0.90 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 30 H 0.11 3.02 5.16 -2.39 -0.01 3.00 16 31 H 0.13 3.27 7.71 -2.39 -0.02 3.25 16 32 H 0.06 1.61 4.31 -2.39 -0.01 1.60 16 33 H 0.10 2.39 4.67 -2.39 -0.01 2.38 16 34 H 0.08 1.74 7.17 -2.39 -0.02 1.72 16 35 H 0.42 11.01 7.95 -96.74 -0.77 10.24 16 36 H 0.13 5.13 7.96 -2.39 -0.02 5.11 16 37 H 0.13 4.22 5.58 -2.39 -0.01 4.20 16 38 H 0.26 13.86 8.32 -92.70 -0.77 13.08 16 39 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 40 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 41 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 42 H 0.07 3.21 8.14 -2.38 -0.02 3.19 16 43 H 0.11 2.18 8.08 -2.39 -0.02 2.16 16 44 H 0.10 2.00 5.82 -2.38 -0.01 1.98 16 45 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.10 1.80 7.75 -2.39 -0.02 1.79 16 Total: -1.00 -67.91 375.78 1.40 -66.50 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.23 Total: 36.09 kcal Atomic # 6 Polarization: -62.25 SS G_CDS: 4.25 Total: -58.01 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -0.55 Total: -81.56 kcal Atomic # 8 Polarization: -106.87 SS G_CDS: -4.28 Total: -111.15 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 101.79 SS G_CDS: -0.27 Total: 101.51 kcal Total: -67.91 1.40 -66.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867702042.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.617 kcal (2) G-P(sol) polarization free energy of solvation -67.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds