Wall clock time and date at job start Wed Apr 1 2020 02:48:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86805 * 120.00175 * 2 1
4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1
5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1
6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1
7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3
8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1
9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1
10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2
11 11 S 1.81394 * 109.47307 * 179.97438 * 10 9 7
12 12 O 1.42098 * 110.54610 * 291.62849 * 11 10 9
13 13 O 1.42105 * 110.54276 * 68.37684 * 11 10 9
14 14 N 1.65603 * 104.45217 * 180.02562 * 11 10 9
15 15 C 1.34774 * 119.99769 * 64.99752 * 14 11 10
16 16 O 1.21274 * 120.00279 * 0.02562 * 15 14 11
17 17 C 1.50703 * 119.99622 * 180.02562 * 15 14 11
18 18 C 1.52996 * 109.46969 * 180.02562 * 17 15 14
19 19 H 1.08998 * 109.43943 * 54.99412 * 18 17 15
20 20 C 1.53079 * 109.43452 * 174.90667 * 18 17 15
21 21 C 1.53357 * 109.07943 * 179.47605 * 20 18 17
22 22 C 1.52848 * 108.74556 * 305.14932 * 21 20 18
23 23 C 1.53357 * 113.54034 * 282.26106 * 22 21 20
24 24 C 1.53855 * 86.94963 * 220.08560 * 23 22 21
25 25 C 1.53329 * 113.59536 * 184.27984 * 22 21 20
26 26 C 1.52751 * 112.68630 * 53.21357 * 22 21 20
27 27 O 1.42874 * 109.43330 * 295.08686 * 18 17 15
28 28 H 0.97001 * 119.99646 * 0.28069 * 1 2 3
29 29 H 1.08998 * 109.47224 * 299.99557 * 9 7 2
30 30 H 1.09002 * 109.47054 * 60.00069 * 9 7 2
31 31 H 1.09000 * 109.47339 * 299.99895 * 10 9 7
32 32 H 1.09002 * 109.46926 * 60.00175 * 10 9 7
33 33 H 0.96995 * 119.99849 * 245.00740 * 14 11 10
34 34 H 1.09002 * 109.46936 * 299.99932 * 17 15 14
35 35 H 1.08998 * 109.47528 * 59.99881 * 17 15 14
36 36 H 1.08997 * 109.53358 * 299.35897 * 20 18 17
37 37 H 1.09001 * 109.53489 * 59.51591 * 20 18 17
38 38 H 1.09003 * 109.58924 * 64.93070 * 21 20 18
39 39 H 1.08998 * 109.58969 * 185.22230 * 21 20 18
40 40 H 1.08997 * 113.63702 * 334.60708 * 23 22 21
41 41 H 1.09006 * 113.63674 * 105.57388 * 23 22 21
42 42 H 1.08999 * 113.60640 * 270.53600 * 24 23 22
43 43 H 1.09007 * 113.59811 * 139.68084 * 24 23 22
44 44 H 1.08990 * 113.63528 * 254.37760 * 25 22 21
45 45 H 1.09005 * 113.63058 * 25.34572 * 25 22 21
46 46 H 1.08999 * 109.52638 * 66.27278 * 26 22 21
47 47 H 1.08999 * 109.52710 * 186.40946 * 26 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1081 1.6935 -1.2091
5 1 1.2842 2.7464 -0.0068
6 1 3.0979 1.6993 1.2159
7 6 2.0046 -1.1941 0.0058
8 1 3.0846 -1.1940 0.0062
9 6 1.2511 -2.4991 0.0115
10 6 2.2453 -3.6621 0.0166
11 16 1.3383 -5.2330 0.0243
12 8 0.6646 -5.4139 1.2623
13 8 0.6639 -5.4254 -1.2117
14 7 2.5204 -6.3927 0.0300
15 6 3.3468 -6.5073 1.0884
16 8 3.2245 -5.7614 2.0368
17 6 4.4229 -7.5623 1.0934
18 6 5.2134 -7.4783 2.4006
19 1 4.5276 -7.5525 3.2446
20 6 6.2216 -8.6286 2.4610
21 6 7.0180 -8.5291 3.7678
22 6 7.6471 -7.1388 3.8549
23 6 8.8963 -6.9759 2.9804
24 6 9.5065 -6.1762 4.1445
25 6 8.5579 -6.9527 5.0743
26 6 6.6253 -6.0176 3.6766
27 8 5.9051 -6.2295 2.4585
28 1 -0.4850 0.8401 -0.0041
29 1 0.6241 -2.5528 0.9015
30 1 0.6247 -2.5609 -0.8785
31 1 2.8719 -3.6083 -0.8736
32 1 2.8719 -3.6004 0.9064
33 1 2.6181 -6.9894 -0.7284
34 1 3.9657 -8.5481 1.0084
35 1 5.0951 -7.3997 0.2509
36 1 5.6911 -9.5803 2.4290
37 1 6.9020 -8.5619 1.6121
38 1 6.3500 -8.6819 4.6154
39 1 7.8004 -9.2880 3.7776
40 1 9.4125 -7.9140 2.7766
41 1 8.7269 -6.3808 2.0829
42 1 9.2949 -5.1079 4.0985
43 1 10.5609 -6.3926 4.3172
44 1 8.1167 -6.3391 5.8596
45 1 8.9804 -7.8844 5.4504
46 1 5.9307 -6.0207 4.5166
47 1 7.1408 -5.0582 3.6338
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000892926879.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:48:11
Heat of formation + Delta-G solvation = -155.079102 kcal
Electronic energy + Delta-G solvation = -29004.196772 eV
Core-core repulsion = 24893.254842 eV
Total energy + Delta-G solvation = -4110.941930 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.91214 -39.89738 -37.42459 -36.63637 -35.56511 -34.36355 -33.84631 -33.57083
-31.43606 -31.12880 -27.75999 -25.99554 -25.58637 -25.17449 -23.44912 -21.69491
-21.37572 -20.98745 -19.28905 -18.80427 -17.82801 -17.39533 -16.76619 -16.47932
-16.17035 -15.74677 -15.61365 -15.13343 -15.02410 -14.85769 -14.51687 -14.41948
-14.05549 -13.91708 -13.39665 -13.03607 -12.91702 -12.68579 -12.56051 -12.41993
-12.33311 -12.02414 -11.75300 -11.67839 -11.65556 -11.56739 -11.39683 -11.13575
-11.02994 -10.95749 -10.78844 -10.72430 -10.40090 -10.35579 -10.31545 -10.21918
-10.08516 -9.66291 -9.52650 -9.14237 -8.45918 -6.08483 -4.13611 0.56925
2.20786 2.78955 3.31179 3.35293 3.37840 3.50872 4.01228 4.18137
4.20845 4.25326 4.31340 4.40901 4.48040 4.55079 4.65254 4.75180
4.77562 4.88036 5.03786 5.06161 5.12186 5.21158 5.26738 5.32427
5.37996 5.39077 5.45505 5.50173 5.53122 5.61527 5.63880 5.66504
5.73934 5.79719 5.81358 5.92721 6.07115 6.13319 6.52405 6.70619
7.09465 7.32810 7.39625 7.58297 7.84858 8.21248 8.89247 9.50597
11.02678
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010984 B = 0.002966 C = 0.002431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2548.600199 B = 9439.362348 C =11513.662942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.891 5.891
2 C 0.058 3.942
3 Si 0.901 3.099
4 H -0.275 1.275
5 H -0.285 1.285
6 H -0.275 1.275
7 C -0.519 4.519
8 H 0.062 0.938
9 C 0.030 3.970
10 C -0.575 4.575
11 S 2.567 3.433
12 O -0.940 6.940
13 O -0.957 6.957
14 N -1.062 6.062
15 C 0.532 3.468
16 O -0.477 6.477
17 C -0.137 4.137
18 C 0.101 3.899
19 H 0.069 0.931
20 C -0.148 4.148
21 C -0.104 4.104
22 C -0.119 4.119
23 C -0.126 4.126
24 C -0.144 4.144
25 C -0.130 4.130
26 C 0.088 3.912
27 O -0.362 6.362
28 H 0.265 0.735
29 H 0.035 0.965
30 H 0.033 0.967
31 H 0.121 0.879
32 H 0.132 0.868
33 H 0.427 0.573
34 H 0.115 0.885
35 H 0.111 0.889
36 H 0.074 0.926
37 H 0.074 0.926
38 H 0.065 0.935
39 H 0.068 0.932
40 H 0.078 0.922
41 H 0.072 0.928
42 H 0.081 0.919
43 H 0.065 0.935
44 H 0.068 0.932
45 H 0.081 0.919
46 H 0.055 0.945
47 H 0.096 0.904
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.214 -20.990 5.042 28.245
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.530 5.530
2 C -0.145 4.145
3 Si 0.729 3.271
4 H -0.201 1.201
5 H -0.211 1.211
6 H -0.200 1.200
7 C -0.558 4.558
8 H 0.080 0.920
9 C -0.009 4.009
10 C -0.709 4.709
11 S 2.667 3.333
12 O -0.930 6.930
13 O -0.948 6.948
14 N -0.823 5.823
15 C 0.318 3.682
16 O -0.347 6.347
17 C -0.178 4.178
18 C 0.042 3.958
19 H 0.087 0.913
20 C -0.186 4.186
21 C -0.141 4.141
22 C -0.120 4.120
23 C -0.163 4.163
24 C -0.181 4.181
25 C -0.168 4.168
26 C 0.012 3.988
27 O -0.281 6.281
28 H 0.075 0.925
29 H 0.054 0.946
30 H 0.052 0.948
31 H 0.139 0.861
32 H 0.150 0.850
33 H 0.262 0.738
34 H 0.133 0.867
35 H 0.130 0.870
36 H 0.092 0.908
37 H 0.093 0.907
38 H 0.084 0.916
39 H 0.086 0.914
40 H 0.096 0.904
41 H 0.091 0.909
42 H 0.100 0.900
43 H 0.084 0.916
44 H 0.087 0.913
45 H 0.100 0.900
46 H 0.074 0.926
47 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 17.020 -20.428 5.630 27.179
hybrid contribution 1.099 0.612 -0.287 1.291
sum 18.119 -19.816 5.344 27.377
Atomic orbital electron populations
1.69949 1.06110 1.27288 1.49609 1.25064 0.94984 0.99515 0.94899
0.86508 0.79473 0.82430 0.78739 1.20076 1.21091 1.20024 1.20957
0.93103 0.89626 1.52130 0.91995 1.18975 0.92619 0.90371 0.98928
1.30323 1.13642 1.16145 1.10832 1.06638 0.74972 0.77301 0.74395
1.93588 1.70452 1.84491 1.44517 1.93584 1.70671 1.85296 1.45243
1.55427 1.49445 1.50296 1.27149 1.20492 0.81454 0.85280 0.80972
1.90920 1.68770 1.42274 1.32696 1.21879 0.96387 0.99052 1.00514
1.21794 0.92610 0.84660 0.96742 0.91254 1.22214 0.98781 0.98593
0.98970 1.21509 0.99409 0.95755 0.97451 1.22275 0.95327 0.96462
0.97898 1.22852 0.95594 1.00380 0.97487 1.22881 0.98939 0.99567
0.96752 1.22861 0.97056 1.00682 0.96151 1.22290 0.92153 0.96975
0.87419 1.88012 1.66081 1.36122 1.37842 0.92491 0.94635 0.94834
0.86113 0.84969 0.73825 0.86735 0.87040 0.90775 0.90746 0.91647
0.91372 0.90360 0.90925 0.90013 0.91593 0.91290 0.90027 0.92639
0.88611
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16
2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
3 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16
4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16
5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16
6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16
7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16
8 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16
9 C 0.03 0.80 4.98 -27.89 -0.14 0.66 16
10 C -0.57 -11.79 5.82 37.16 0.22 -11.58 16
11 S 2.57 47.58 5.11 -107.50 -0.55 47.03 16
12 O -0.94 -20.94 17.04 -64.80 -1.10 -22.05 16
13 O -0.96 -19.26 18.08 -57.54 -1.04 -20.30 16
14 N -1.06 -13.49 5.60 31.22 0.17 -13.31 16
15 C 0.53 7.11 7.45 -10.98 -0.08 7.03 16
16 O -0.48 -8.51 13.51 -20.81 -0.28 -8.79 16
17 C -0.14 -1.15 5.41 -27.88 -0.15 -1.30 16
18 C 0.10 0.97 2.13 -26.69 -0.06 0.92 16
19 H 0.07 0.75 7.95 -51.93 -0.41 0.34 16
20 C -0.15 -1.00 5.36 -26.51 -0.14 -1.15 16
21 C -0.10 -0.71 5.20 -26.62 -0.14 -0.85 16
22 C -0.12 -0.92 0.85 -154.36 -0.13 -1.06 16
23 C -0.13 -0.92 7.12 -26.10 -0.19 -1.11 16
24 C -0.14 -0.99 7.73 -25.84 -0.20 -1.19 16
25 C -0.13 -0.88 7.23 -26.11 -0.19 -1.07 16
26 C 0.09 0.90 5.93 37.03 0.22 1.12 16
27 O -0.36 -4.41 9.64 -49.78 -0.48 -4.89 16
28 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16
29 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16
30 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16
31 H 0.12 2.15 8.14 -51.92 -0.42 1.73 16
32 H 0.13 2.71 7.19 -51.92 -0.37 2.34 16
33 H 0.43 3.50 8.79 -34.47 -0.30 3.19 16
34 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16
35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16
36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16
37 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16
38 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16
39 H 0.07 0.40 8.04 -51.93 -0.42 -0.02 16
40 H 0.08 0.51 8.02 -51.93 -0.42 0.09 16
41 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16
42 H 0.08 0.58 7.64 -51.93 -0.40 0.19 16
43 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16
44 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16
45 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16
46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16
47 H 0.10 0.95 7.34 -51.93 -0.38 0.57 16
LS Contribution 389.63 15.07 5.87 5.87
Total: -1.00 -37.87 389.63 -10.81 -48.68
By element:
Atomic # 1 Polarization: 8.15 SS G_CDS: -7.73 Total: 0.42 kcal
Atomic # 6 Polarization: -21.70 SS G_CDS: -1.39 Total: -23.09 kcal
Atomic # 7 Polarization: -40.48 SS G_CDS: 0.91 Total: -39.56 kcal
Atomic # 8 Polarization: -53.12 SS G_CDS: -2.91 Total: -56.02 kcal
Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal
Atomic # 16 Polarization: 47.58 SS G_CDS: -0.55 Total: 47.03 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -37.87 -10.81 -48.68 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892926879.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -106.397 kcal
(2) G-P(sol) polarization free energy of solvation -37.869 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.266 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.682 kcal
(6) G-S(sol) free energy of system = (1) + (5) -155.079 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds