Wall clock time and date at job start Wed Apr 1 2020 02:48:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86805 * 120.00175 * 2 1
4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1
5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1
6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1
7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3
8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1
9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1
10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2
11 11 S 1.81394 * 109.47307 * 179.97438 * 10 9 7
12 12 O 1.42098 * 110.54610 * 291.62849 * 11 10 9
13 13 O 1.42105 * 110.54276 * 68.37684 * 11 10 9
14 14 N 1.65603 * 104.45217 * 180.02562 * 11 10 9
15 15 C 1.34774 * 119.99769 * 64.99752 * 14 11 10
16 16 O 1.21274 * 120.00279 * 0.02562 * 15 14 11
17 17 C 1.50703 * 119.99622 * 180.02562 * 15 14 11
18 18 C 1.52996 * 109.46969 * 180.02562 * 17 15 14
19 19 H 1.08998 * 109.43943 * 54.99412 * 18 17 15
20 20 C 1.53079 * 109.43452 * 174.90667 * 18 17 15
21 21 C 1.53357 * 109.07943 * 179.47605 * 20 18 17
22 22 C 1.52848 * 108.74556 * 305.14932 * 21 20 18
23 23 C 1.53357 * 113.54034 * 282.26106 * 22 21 20
24 24 C 1.53855 * 86.94963 * 220.08560 * 23 22 21
25 25 C 1.53329 * 113.59536 * 184.27984 * 22 21 20
26 26 C 1.52751 * 112.68630 * 53.21357 * 22 21 20
27 27 O 1.42874 * 109.43330 * 295.08686 * 18 17 15
28 28 H 0.97001 * 119.99646 * 0.28069 * 1 2 3
29 29 H 1.08998 * 109.47224 * 299.99557 * 9 7 2
30 30 H 1.09002 * 109.47054 * 60.00069 * 9 7 2
31 31 H 1.09000 * 109.47339 * 299.99895 * 10 9 7
32 32 H 1.09002 * 109.46926 * 60.00175 * 10 9 7
33 33 H 0.96995 * 119.99849 * 245.00740 * 14 11 10
34 34 H 1.09002 * 109.46936 * 299.99932 * 17 15 14
35 35 H 1.08998 * 109.47528 * 59.99881 * 17 15 14
36 36 H 1.08997 * 109.53358 * 299.35897 * 20 18 17
37 37 H 1.09001 * 109.53489 * 59.51591 * 20 18 17
38 38 H 1.09003 * 109.58924 * 64.93070 * 21 20 18
39 39 H 1.08998 * 109.58969 * 185.22230 * 21 20 18
40 40 H 1.08997 * 113.63702 * 334.60708 * 23 22 21
41 41 H 1.09006 * 113.63674 * 105.57388 * 23 22 21
42 42 H 1.08999 * 113.60640 * 270.53600 * 24 23 22
43 43 H 1.09007 * 113.59811 * 139.68084 * 24 23 22
44 44 H 1.08990 * 113.63528 * 254.37760 * 25 22 21
45 45 H 1.09005 * 113.63058 * 25.34572 * 25 22 21
46 46 H 1.08999 * 109.52638 * 66.27278 * 26 22 21
47 47 H 1.08999 * 109.52710 * 186.40946 * 26 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1081 1.6935 -1.2091
5 1 1.2842 2.7464 -0.0068
6 1 3.0979 1.6993 1.2159
7 6 2.0046 -1.1941 0.0058
8 1 3.0846 -1.1940 0.0062
9 6 1.2511 -2.4991 0.0115
10 6 2.2453 -3.6621 0.0166
11 16 1.3383 -5.2330 0.0243
12 8 0.6646 -5.4139 1.2623
13 8 0.6639 -5.4254 -1.2117
14 7 2.5204 -6.3927 0.0300
15 6 3.3468 -6.5073 1.0884
16 8 3.2245 -5.7614 2.0368
17 6 4.4229 -7.5623 1.0934
18 6 5.2134 -7.4783 2.4006
19 1 4.5276 -7.5525 3.2446
20 6 6.2216 -8.6286 2.4610
21 6 7.0180 -8.5291 3.7678
22 6 7.6471 -7.1388 3.8549
23 6 8.8963 -6.9759 2.9804
24 6 9.5065 -6.1762 4.1445
25 6 8.5579 -6.9527 5.0743
26 6 6.6253 -6.0176 3.6766
27 8 5.9051 -6.2295 2.4585
28 1 -0.4850 0.8401 -0.0041
29 1 0.6241 -2.5528 0.9015
30 1 0.6247 -2.5609 -0.8785
31 1 2.8719 -3.6083 -0.8736
32 1 2.8719 -3.6004 0.9064
33 1 2.6181 -6.9894 -0.7284
34 1 3.9657 -8.5481 1.0084
35 1 5.0951 -7.3997 0.2509
36 1 5.6911 -9.5803 2.4290
37 1 6.9020 -8.5619 1.6121
38 1 6.3500 -8.6819 4.6154
39 1 7.8004 -9.2880 3.7776
40 1 9.4125 -7.9140 2.7766
41 1 8.7269 -6.3808 2.0829
42 1 9.2949 -5.1079 4.0985
43 1 10.5609 -6.3926 4.3172
44 1 8.1167 -6.3391 5.8596
45 1 8.9804 -7.8844 5.4504
46 1 5.9307 -6.0207 4.5166
47 1 7.1408 -5.0582 3.6338
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000892926879.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:48:10
Heat of formation + Delta-G solvation = -182.576201 kcal
Electronic energy + Delta-G solvation = -29005.389136 eV
Core-core repulsion = 24893.254842 eV
Total energy + Delta-G solvation = -4112.134294 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-41.65703 -40.90240 -38.33084 -38.08159 -37.21907 -35.96825 -35.54773 -34.25126
-33.19000 -32.08413 -28.49629 -27.65136 -26.54788 -25.89265 -24.24748 -23.60825
-22.30020 -21.67435 -20.69318 -19.44328 -19.33813 -18.70883 -18.29356 -17.57849
-17.18924 -16.86943 -16.63899 -16.55342 -16.30718 -16.10094 -15.94090 -15.22361
-15.08393 -14.72986 -14.69641 -14.49834 -13.89581 -13.79191 -13.65558 -13.45516
-13.36735 -13.25765 -13.23303 -13.00496 -12.94329 -12.85692 -12.71565 -12.32556
-12.25073 -12.24041 -11.99709 -11.96997 -11.77387 -11.73132 -11.37470 -11.30779
-11.06356 -10.89484 -10.77438 -10.66439 -10.25211 -8.28757 -6.43045 -0.97628
1.12710 1.38362 1.42770 1.46657 1.51015 2.35835 2.57583 2.80471
3.03774 3.04990 3.30477 3.60744 3.66064 3.73697 3.80751 3.88095
4.00295 4.03619 4.05804 4.17119 4.19359 4.30242 4.51186 4.53257
4.60396 4.68057 4.71115 4.73404 4.83331 4.89884 4.93135 4.96712
5.09465 5.12608 5.15782 5.20609 5.22277 5.23763 5.37405 5.50661
5.58650 5.64635 5.75927 6.02677 6.34511 6.55345 6.69086 7.26736
8.83576
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.010984 B = 0.002966 C = 0.002431
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2548.600199 B = 9439.362348 C =11513.662942
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.933 5.933
2 C -0.002 4.002
3 Si 0.976 3.024
4 H -0.260 1.260
5 H -0.280 1.280
6 H -0.267 1.267
7 C -0.543 4.543
8 H 0.072 0.928
9 C 0.024 3.976
10 C -0.580 4.580
11 S 2.602 3.398
12 O -0.981 6.981
13 O -0.972 6.972
14 N -1.037 6.037
15 C 0.527 3.473
16 O -0.526 6.526
17 C -0.128 4.128
18 C 0.090 3.910
19 H 0.048 0.952
20 C -0.139 4.139
21 C -0.105 4.105
22 C -0.119 4.119
23 C -0.121 4.121
24 C -0.145 4.145
25 C -0.127 4.127
26 C 0.084 3.916
27 O -0.389 6.389
28 H 0.269 0.731
29 H 0.003 0.997
30 H 0.015 0.985
31 H 0.149 0.851
32 H 0.129 0.871
33 H 0.451 0.549
34 H 0.160 0.840
35 H 0.142 0.858
36 H 0.098 0.902
37 H 0.083 0.917
38 H 0.060 0.940
39 H 0.086 0.914
40 H 0.094 0.906
41 H 0.058 0.942
42 H 0.072 0.928
43 H 0.076 0.924
44 H 0.062 0.938
45 H 0.096 0.904
46 H 0.040 0.960
47 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.934 -23.066 4.129 31.422
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.201 4.201
3 Si 0.799 3.201
4 H -0.184 1.184
5 H -0.205 1.205
6 H -0.192 1.192
7 C -0.582 4.582
8 H 0.090 0.910
9 C -0.015 4.015
10 C -0.712 4.712
11 S 2.701 3.299
12 O -0.971 6.971
13 O -0.963 6.963
14 N -0.806 5.806
15 C 0.316 3.684
16 O -0.399 6.399
17 C -0.168 4.168
18 C 0.032 3.968
19 H 0.066 0.934
20 C -0.176 4.176
21 C -0.142 4.142
22 C -0.119 4.119
23 C -0.158 4.158
24 C -0.183 4.183
25 C -0.164 4.164
26 C 0.007 3.993
27 O -0.308 6.308
28 H 0.078 0.922
29 H 0.022 0.978
30 H 0.034 0.966
31 H 0.167 0.833
32 H 0.148 0.852
33 H 0.292 0.708
34 H 0.177 0.823
35 H 0.160 0.840
36 H 0.117 0.883
37 H 0.102 0.898
38 H 0.079 0.921
39 H 0.105 0.895
40 H 0.112 0.888
41 H 0.077 0.923
42 H 0.090 0.910
43 H 0.095 0.905
44 H 0.081 0.919
45 H 0.114 0.886
46 H 0.059 0.941
47 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges 19.749 -22.515 4.681 30.313
hybrid contribution 0.252 1.186 0.019 1.213
sum 20.001 -21.329 4.699 29.615
Atomic orbital electron populations
1.70090 1.08008 1.28515 1.50573 1.26124 0.95926 1.03864 0.94168
0.85344 0.78182 0.77159 0.79452 1.18418 1.20537 1.19188 1.21450
0.93867 0.90869 1.52046 0.91005 1.18804 0.93400 0.92745 0.96516
1.30234 1.12813 1.16072 1.12116 1.05235 0.74796 0.76824 0.73052
1.93539 1.72068 1.84989 1.46462 1.93557 1.71632 1.85431 1.45649
1.54847 1.48171 1.49136 1.28399 1.21577 0.81619 0.85527 0.79726
1.90917 1.69985 1.44442 1.34573 1.22101 0.94804 0.98983 1.00957
1.22020 0.93133 0.84965 0.96713 0.93370 1.22170 0.98204 0.98135
0.99123 1.21551 0.99850 0.95311 0.97527 1.22190 0.94899 0.96160
0.98668 1.22838 0.95314 1.00849 0.96790 1.22883 0.99587 0.99079
0.96732 1.22879 0.96681 1.01200 0.95678 1.22304 0.92478 0.97968
0.86557 1.87963 1.66594 1.37902 1.38352 0.92237 0.97842 0.96626
0.83316 0.85221 0.70815 0.82295 0.84007 0.88332 0.89820 0.92132
0.89542 0.88800 0.92302 0.90981 0.90542 0.91944 0.88569 0.94142
0.89438
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.14 13.29 21.45 0.28 -57.86 16
2 C 0.00 -0.13 5.46 84.66 0.46 0.33 16
3 Si 0.98 44.75 29.54 68.60 2.03 46.78 16
4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16
5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16
6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16
7 C -0.54 -31.69 9.11 25.60 0.23 -31.45 16
8 H 0.07 3.92 7.74 -2.91 -0.02 3.90 16
9 C 0.02 1.34 4.98 29.85 0.15 1.49 16
10 C -0.58 -24.23 5.82 71.98 0.42 -23.81 16
11 S 2.60 96.79 5.11 -56.49 -0.29 96.50 16
12 O -0.98 -44.88 17.04 -120.71 -2.06 -46.94 16
13 O -0.97 -38.73 18.08 -127.65 -2.31 -41.04 16
14 N -1.04 -24.37 5.60 -173.54 -0.97 -25.34 16
15 C 0.53 13.25 7.45 87.66 0.65 13.90 16
16 O -0.53 -19.03 13.51 22.21 0.30 -18.73 16
17 C -0.13 -1.70 5.41 29.85 0.16 -1.54 16
18 C 0.09 1.59 2.13 30.62 0.07 1.65 16
19 H 0.05 1.03 7.95 -2.39 -0.02 1.02 16
20 C -0.14 -1.42 5.36 30.74 0.16 -1.25 16
21 C -0.11 -1.18 5.20 30.66 0.16 -1.02 16
22 C -0.12 -1.70 0.85 -52.09 -0.04 -1.75 16
23 C -0.12 -1.56 7.12 31.00 0.22 -1.34 16
24 C -0.15 -1.84 7.73 31.17 0.24 -1.60 16
25 C -0.13 -1.57 7.23 30.99 0.22 -1.34 16
26 C 0.08 1.76 5.93 71.90 0.43 2.18 16
27 O -0.39 -9.36 9.64 -135.07 -1.30 -10.66 16
28 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16
29 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16
30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
31 H 0.15 5.22 8.14 -2.39 -0.02 5.20 16
32 H 0.13 5.49 7.19 -2.39 -0.02 5.47 16
33 H 0.45 5.88 8.79 -96.75 -0.85 5.03 16
34 H 0.16 0.76 8.14 -2.39 -0.02 0.74 16
35 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16
36 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16
37 H 0.08 0.75 8.13 -2.39 -0.02 0.73 16
38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
39 H 0.09 0.69 8.04 -2.39 -0.02 0.67 16
40 H 0.09 0.93 8.02 -2.39 -0.02 0.91 16
41 H 0.06 0.93 8.09 -2.38 -0.02 0.91 16
42 H 0.07 1.03 7.64 -2.39 -0.02 1.02 16
43 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16
44 H 0.06 0.84 8.09 -2.39 -0.02 0.83 16
45 H 0.10 0.92 8.10 -2.38 -0.02 0.90 16
46 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16
47 H 0.09 1.87 7.34 -2.39 -0.02 1.85 16
Total: -1.00 -86.43 389.63 -0.67 -87.10
By element:
Atomic # 1 Polarization: 15.63 SS G_CDS: 0.11 Total: 15.74 kcal
Atomic # 6 Polarization: -49.09 SS G_CDS: 3.53 Total: -45.56 kcal
Atomic # 7 Polarization: -82.51 SS G_CDS: -0.69 Total: -83.20 kcal
Atomic # 8 Polarization: -111.99 SS G_CDS: -5.37 Total: -117.36 kcal
Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal
Atomic # 16 Polarization: 96.79 SS G_CDS: -0.29 Total: 96.50 kcal
Total: -86.43 -0.67 -87.10 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000892926879.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -95.476 kcal
(2) G-P(sol) polarization free energy of solvation -86.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.910 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.666 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.100 kcal
(6) G-S(sol) free energy of system = (1) + (5) -182.576 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds