Wall clock time and date at job start Wed Apr 1 2020 03:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00198 * 2 1 4 4 H 1.48507 * 109.47426 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47140 * 300.00236 * 3 2 1 6 6 H 1.48499 * 109.47414 * 60.00249 * 3 2 1 7 7 C 1.38706 * 119.99814 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99498 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.35517 * 116.99715 * 185.06260 * 9 7 2 11 11 C 1.38840 * 120.16208 * 354.40752 * 10 9 7 12 12 C 1.38026 * 120.06882 * 180.27399 * 11 10 9 13 13 C 1.38572 * 120.40524 * 359.74081 * 12 11 10 14 14 C 1.37832 * 120.32211 * 359.97438 * 13 12 11 15 15 C 1.39666 * 119.91818 * 0.02721 * 14 13 12 16 16 C 1.47535 * 120.19663 * 179.97438 * 15 14 13 17 17 O 1.21593 * 120.00198 * 179.97438 * 16 15 14 18 18 N 1.34777 * 119.99851 * 359.97438 * 16 15 14 19 19 C 1.46502 * 119.99828 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47111 * 179.97438 * 19 18 16 21 21 H 1.09006 * 109.47078 * 54.99917 * 20 19 18 22 22 C 1.53006 * 109.46891 * 295.00180 * 20 19 18 23 23 O 1.42899 * 109.47021 * 64.99903 * 22 20 19 24 24 C 1.52992 * 109.47294 * 174.99979 * 20 19 18 25 25 C 1.50702 * 109.47326 * 185.00100 * 24 20 19 26 26 C 1.34506 * 125.79014 * 90.01664 * 25 24 20 27 27 C 1.41382 * 106.83954 * 179.97438 * 26 25 24 28 28 C 1.34510 * 106.84274 * 359.97438 * 27 26 25 29 29 O 1.34302 * 108.42084 * 0.02562 * 28 27 26 30 30 H 0.96999 * 120.00028 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.96305 * 359.97438 * 11 10 9 32 32 H 1.08001 * 119.79898 * 179.76173 * 12 11 10 33 33 H 1.08000 * 119.83790 * 180.02562 * 13 12 11 34 34 H 1.07997 * 120.04179 * 180.02562 * 14 13 12 35 35 H 0.97003 * 120.00170 * 359.97438 * 18 16 15 36 36 H 1.09004 * 109.47092 * 59.99859 * 19 18 16 37 37 H 1.08997 * 109.47047 * 299.99967 * 19 18 16 38 38 H 1.08998 * 109.46610 * 185.00141 * 22 20 19 39 39 H 1.08997 * 109.46814 * 304.99682 * 22 20 19 40 40 H 0.96698 * 113.99405 * 179.97438 * 23 22 20 41 41 H 1.08999 * 109.47233 * 64.99610 * 24 20 19 42 42 H 1.09002 * 109.47365 * 305.00331 * 24 20 19 43 43 H 1.08001 * 126.58423 * 359.96159 * 26 25 24 44 44 H 1.08002 * 126.57623 * 180.26421 * 27 26 25 45 45 H 1.07996 * 125.78992 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2012 -0.0010 9 8 1.3345 -2.3687 -0.0005 10 6 2.0686 -3.5030 0.1055 11 6 3.4555 -3.4403 0.0911 12 6 4.2012 -4.5972 0.1936 13 6 3.5744 -5.8270 0.3166 14 6 2.1986 -5.9077 0.3385 15 6 1.4309 -4.7455 0.2358 16 6 -0.0422 -4.8249 0.2580 17 8 -0.7071 -3.8108 0.1688 18 7 -0.6508 -6.0215 0.3773 19 6 -2.1135 -6.1003 0.3988 20 6 -2.5435 -7.5618 0.5407 21 1 -2.0718 -7.9953 1.4227 22 6 -2.1142 -8.3428 -0.7030 23 8 -0.6875 -8.3738 -0.7770 24 6 -4.0645 -7.6339 0.6884 25 6 -4.4768 -9.0595 0.9509 26 6 -4.5960 -9.6337 2.1614 27 6 -5.0027 -10.9700 1.9426 28 6 -5.1082 -11.1323 0.6115 29 8 -4.7882 -9.9719 0.0158 30 1 -0.4850 0.8400 0.0004 31 1 3.9513 -2.4856 -0.0051 32 1 5.2797 -4.5437 0.1781 33 1 4.1668 -6.7264 0.3965 34 1 1.7149 -6.8684 0.4350 35 1 -0.1204 -6.8305 0.4481 36 1 -2.5131 -5.6930 -0.5300 37 1 -2.4960 -5.5251 1.2419 38 1 -2.4972 -9.3614 -0.6425 39 1 -2.5138 -7.8567 -1.5930 40 1 -0.3438 -8.8542 -1.5427 41 1 -4.5358 -7.2825 -0.2294 42 1 -4.3789 -7.0055 1.5217 43 1 -4.4155 -9.1642 3.1171 44 1 -5.1965 -11.7158 2.6993 45 1 -5.4006 -12.0414 0.1073 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919812077.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:17 Heat of formation + Delta-G solvation = -69.765217 kcal Electronic energy + Delta-G solvation = -29539.313905 eV Core-core repulsion = 25296.627511 eV Total energy + Delta-G solvation = -4242.686394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.83612 -39.53896 -38.46766 -37.30536 -36.23682 -35.15882 -33.41543 -32.94081 -32.26764 -30.66710 -29.48731 -28.82662 -26.02199 -25.86144 -25.19308 -22.77222 -22.01948 -21.44869 -20.90952 -20.43563 -19.59560 -17.96568 -17.70360 -17.62891 -17.23039 -16.31394 -15.99454 -15.80734 -15.36976 -14.71242 -14.60914 -14.44424 -14.14681 -14.07416 -13.93085 -13.64994 -13.36859 -13.09094 -12.99357 -12.97257 -12.69364 -12.51141 -12.36517 -12.24993 -12.00528 -11.66012 -11.30551 -11.25026 -11.02715 -10.87674 -10.80942 -10.67713 -10.39844 -10.20119 -10.05446 -9.48295 -8.82578 -8.77882 -8.64658 -8.34147 -8.15039 -7.22299 -6.38410 -3.98067 1.46443 1.82500 2.36503 2.40564 2.71622 3.15148 3.16071 3.21632 3.73033 3.88558 3.98460 4.05511 4.42005 4.64549 4.74793 4.77302 4.79689 4.90690 5.03085 5.14693 5.21633 5.25214 5.27913 5.41822 5.46471 5.56481 5.58838 5.65166 5.67938 5.71552 5.83375 5.88854 6.00235 6.10081 6.22257 6.23029 6.26557 6.66524 6.79320 6.88074 7.01025 7.15745 7.18949 7.32395 7.36894 7.49773 7.78499 7.99494 8.40941 9.01657 9.28075 9.75794 10.75771 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.016164 B = 0.002396 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.805781 B =11682.439938 C =13016.601171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.044 3.956 3 Si 0.940 3.060 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.403 4.403 8 H 0.094 0.906 9 O -0.125 6.125 10 C 0.189 3.811 11 C -0.240 4.240 12 C -0.052 4.052 13 C -0.232 4.232 14 C -0.036 4.036 15 C -0.223 4.223 16 C 0.552 3.448 17 O -0.509 6.509 18 N -0.732 5.732 19 C 0.134 3.866 20 C -0.097 4.097 21 H 0.089 0.911 22 C 0.083 3.917 23 O -0.569 6.569 24 C -0.033 4.033 25 C -0.005 4.005 26 C -0.210 4.210 27 C -0.212 4.212 28 C -0.048 4.048 29 O -0.176 6.176 30 H 0.270 0.730 31 H 0.131 0.869 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.403 0.597 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.049 0.951 40 H 0.381 0.619 41 H 0.089 0.911 42 H 0.107 0.893 43 H 0.148 0.852 44 H 0.146 0.854 45 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.200 -21.270 0.833 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.479 4.479 8 H 0.111 0.889 9 O -0.024 6.024 10 C 0.130 3.870 11 C -0.260 4.260 12 C -0.071 4.071 13 C -0.251 4.251 14 C -0.055 4.055 15 C -0.228 4.228 16 C 0.341 3.659 17 O -0.384 6.384 18 N -0.390 5.390 19 C 0.009 3.991 20 C -0.116 4.116 21 H 0.107 0.893 22 C 0.005 3.995 23 O -0.375 6.375 24 C -0.071 4.071 25 C -0.055 4.055 26 C -0.229 4.229 27 C -0.231 4.231 28 C -0.115 4.115 29 O -0.073 6.073 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.242 0.758 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.229 0.771 41 H 0.107 0.893 42 H 0.125 0.875 43 H 0.166 0.834 44 H 0.164 0.836 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.225 -19.851 0.978 21.148 hybrid contribution 0.770 -0.262 -0.247 0.851 sum -6.455 -20.114 0.730 21.137 Atomic orbital electron populations 1.70146 1.05934 1.27452 1.43056 1.25375 0.95790 0.98900 0.96317 0.85674 0.79192 0.80398 0.78284 1.19009 1.20089 1.20068 1.21534 0.91878 0.81203 1.53262 0.88904 1.84184 1.33438 1.10912 1.73833 1.19307 0.89840 0.87470 0.90421 1.21146 0.93420 0.99263 1.12134 1.20883 0.98544 0.92358 0.95301 1.20465 0.94132 0.97017 1.13497 1.20830 0.93741 0.95790 0.95110 1.18898 0.92183 0.92036 1.19684 1.18238 0.87796 0.82963 0.76933 1.90933 1.65826 1.34113 1.47538 1.45905 1.05941 1.09537 1.77666 1.21077 0.82429 0.93407 1.02154 1.21451 0.94313 0.96542 0.99303 0.89257 1.22229 0.81400 0.98607 0.97290 1.86299 1.20545 1.79265 1.51360 1.20088 0.94514 0.87418 1.05077 1.22400 1.03856 0.92366 0.86914 1.21640 1.07750 0.95106 0.98394 1.21845 1.07172 0.97799 0.96325 1.24004 1.05596 0.88916 0.92985 1.84033 1.66576 1.19448 1.37208 0.92022 0.85169 0.87312 0.87387 0.86700 0.75837 0.91910 0.91675 0.93539 0.93282 0.77126 0.89263 0.87488 0.83389 0.83571 0.78280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.56 13.67 55.48 0.76 -24.80 16 2 C 0.04 1.23 5.49 -17.51 -0.10 1.14 16 3 Si 0.94 20.90 29.55 -169.99 -5.02 15.87 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.40 -11.64 9.49 30.91 0.29 -11.35 16 8 H 0.09 2.44 5.21 -52.49 -0.27 2.17 16 9 O -0.13 -3.79 7.84 -21.05 -0.16 -3.95 16 10 C 0.19 4.85 6.66 -38.60 -0.26 4.59 16 11 C -0.24 -5.33 9.16 -39.44 -0.36 -5.69 16 12 C -0.05 -0.96 10.03 -39.54 -0.40 -1.35 16 13 C -0.23 -3.98 10.03 -39.61 -0.40 -4.38 16 14 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 15 C -0.22 -5.07 5.89 -104.81 -0.62 -5.68 16 16 C 0.55 12.67 7.76 -12.47 -0.10 12.57 16 17 O -0.51 -14.34 15.17 -16.57 -0.25 -14.59 16 18 N -0.73 -12.60 4.96 -61.34 -0.30 -12.91 16 19 C 0.13 1.94 5.06 -4.04 -0.02 1.92 16 20 C -0.10 -1.01 2.28 -90.62 -0.21 -1.22 16 21 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 22 C 0.08 0.81 6.32 37.16 0.23 1.05 16 23 O -0.57 -5.83 10.88 -35.23 -0.38 -6.21 16 24 C -0.03 -0.29 5.22 -27.89 -0.15 -0.44 16 25 C -0.01 -0.05 5.73 -35.63 -0.20 -0.25 16 26 C -0.21 -1.93 10.81 -39.71 -0.43 -2.36 16 27 C -0.21 -1.74 10.91 -39.70 -0.43 -2.17 16 28 C -0.05 -0.37 12.09 29.41 0.36 -0.01 16 29 O -0.18 -1.70 9.92 5.70 0.06 -1.65 16 30 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 31 H 0.13 2.85 5.64 -52.49 -0.30 2.55 16 32 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 33 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.12 1.72 6.40 -52.49 -0.34 1.39 16 35 H 0.40 6.11 4.32 -40.82 -0.18 5.93 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.05 0.43 6.65 -51.93 -0.35 0.09 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.38 2.43 9.12 45.56 0.42 2.85 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 44 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 45 H 0.20 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -37.58 380.55 -7.53 -45.10 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -4.80 Total: 12.07 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -3.15 Total: -14.67 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.45 Total: -37.71 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.74 Total: -26.40 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.58 -7.53 -45.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919812077.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.664 kcal (2) G-P(sol) polarization free energy of solvation -37.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds