Wall clock time and date at job start Wed Apr 1 2020 02:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00312 * 2 1 4 4 H 1.48490 * 109.47315 * 269.99635 * 3 2 1 5 5 H 1.48495 * 109.46883 * 30.00021 * 3 2 1 6 6 H 1.48509 * 109.46973 * 149.99650 * 3 2 1 7 7 C 1.37879 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99919 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00220 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47189 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.46897 * 180.02562 * 10 9 7 12 12 O 1.42107 * 110.54328 * 68.57716 * 11 10 9 13 13 O 1.42097 * 110.54295 * 291.82182 * 11 10 9 14 14 N 1.65605 * 104.44729 * 180.19779 * 11 10 9 15 15 C 1.47420 * 125.65046 * 84.21875 * 14 11 10 16 16 C 1.54906 * 104.83514 * 155.82603 * 15 14 11 17 17 H 1.09002 * 111.03452 * 278.92259 * 16 15 14 18 18 C 1.52995 * 111.00346 * 155.08405 * 16 15 14 19 19 C 1.54894 * 110.75675 * 74.47737 * 18 16 15 20 20 C 1.54262 * 104.19345 * 156.25760 * 19 18 16 21 21 C 1.53870 * 106.60143 * 336.38352 * 20 19 18 22 22 C 1.54262 * 106.59874 * 0.02562 * 21 20 19 23 23 C 1.55152 * 101.58253 * 37.00654 * 16 15 14 24 24 C 1.47020 * 125.64801 * 264.16283 * 14 11 10 25 25 H 1.09006 * 109.88063 * 61.68555 * 24 14 11 26 26 C 1.50701 * 110.01125 * 300.59785 * 24 14 11 27 27 O 1.20825 * 119.99765 * 334.65969 * 26 24 14 28 28 O 1.34235 * 120.00099 * 154.66482 * 26 24 14 29 29 H 0.97007 * 119.99750 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46767 * 60.00341 * 9 7 2 31 31 H 1.09002 * 109.47378 * 300.00743 * 9 7 2 32 32 H 1.09003 * 109.47052 * 60.00437 * 10 9 7 33 33 H 1.09003 * 109.47221 * 299.99859 * 10 9 7 34 34 H 1.09004 * 110.36536 * 36.98153 * 15 14 11 35 35 H 1.09001 * 110.36555 * 274.66393 * 15 14 11 36 36 H 1.08995 * 110.67526 * 311.03644 * 18 16 15 37 37 H 1.08992 * 110.48697 * 37.57565 * 19 18 16 38 38 H 1.09004 * 110.47859 * 274.93089 * 19 18 16 39 39 H 1.09004 * 110.02977 * 217.10500 * 20 19 18 40 40 H 1.08999 * 110.03458 * 95.67479 * 20 19 18 41 41 H 1.09005 * 110.03372 * 119.29112 * 21 20 19 42 42 H 1.08998 * 110.03723 * 240.67277 * 21 20 19 43 43 H 1.09003 * 110.49079 * 142.28324 * 22 21 20 44 44 H 1.08996 * 110.48754 * 264.93036 * 22 21 20 45 45 H 1.09002 * 110.71817 * 82.86142 * 23 16 15 46 46 H 1.09001 * 110.72398 * 206.13425 * 23 16 15 47 47 H 0.96700 * 116.99950 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 16 5.8354 -2.6368 0.0025 12 8 6.3331 -2.1512 1.2418 13 8 6.3351 -2.1417 -1.2322 14 7 6.2486 -4.2404 -0.0033 15 6 6.3470 -5.0980 -1.1984 16 6 7.3183 -6.2343 -0.7922 17 1 8.3558 -5.9103 -0.8746 18 6 7.0715 -7.4917 -1.6281 19 6 7.6198 -7.3118 -3.0655 20 6 7.8658 -8.7523 -3.5596 21 6 8.0478 -9.6227 -2.3039 22 6 7.9053 -8.6809 -1.0904 23 6 6.9243 -6.4658 0.6905 24 6 6.5790 -5.0444 1.1824 25 1 5.7220 -5.0827 1.8549 26 6 7.7642 -4.4472 1.8964 27 8 8.5597 -3.7725 1.2867 28 8 7.9360 -4.6650 3.2098 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6802 0.8912 31 1 3.8752 -0.6805 -0.8888 32 1 3.6584 -3.1503 -0.8893 33 1 3.6577 -3.1508 0.8907 34 1 6.7532 -4.5337 -2.0379 35 1 5.3695 -5.5075 -1.4530 36 1 6.0104 -7.7406 -1.6447 37 1 8.5531 -6.7491 -3.0501 38 1 6.8829 -6.8131 -3.6951 39 1 8.7666 -8.7881 -4.1724 40 1 7.0083 -9.1013 -4.1348 41 1 7.2785 -10.3943 -2.2696 42 1 9.0364 -10.0816 -2.3076 43 1 7.3772 -9.1815 -0.2788 44 1 8.8847 -8.3390 -0.7558 45 1 6.0552 -7.1199 0.7609 46 1 7.7632 -6.8755 1.2531 47 1 8.7112 -4.2615 3.6240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926608481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:19 Heat of formation + Delta-G solvation = -179.165797 kcal Electronic energy + Delta-G solvation = -29595.061239 eV Core-core repulsion = 25483.074831 eV Total energy + Delta-G solvation = -4111.986408 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72954 -39.20916 -37.35204 -36.77281 -35.97303 -35.57694 -33.98174 -32.08198 -31.51310 -30.48408 -28.90749 -27.35642 -26.00620 -24.22561 -22.15319 -21.57825 -21.03222 -20.35875 -20.17983 -18.69404 -18.16554 -17.84060 -17.03559 -16.95351 -16.24866 -15.59902 -15.55221 -15.49083 -15.21042 -14.63816 -14.31802 -13.98546 -13.84095 -13.64016 -13.52590 -13.42724 -12.92474 -12.88378 -12.79321 -12.19484 -11.93209 -11.83487 -11.72638 -11.61363 -11.58618 -11.49805 -11.41685 -11.31118 -11.28019 -11.22231 -10.94633 -10.81153 -10.70637 -10.65890 -10.53313 -10.46049 -10.17712 -9.77770 -9.47170 -9.04515 -8.68322 -6.18790 -4.20306 0.49334 2.17545 2.69365 3.00026 3.25597 3.32926 3.37601 3.89838 4.07729 4.19491 4.32363 4.34307 4.36038 4.41803 4.63810 4.72207 4.92619 5.03047 5.12133 5.13567 5.16226 5.22337 5.26335 5.28221 5.34523 5.37955 5.44170 5.45557 5.48819 5.50569 5.59916 5.63179 5.68645 5.79496 5.87107 5.92587 5.93592 6.06999 6.16943 6.21428 6.23144 6.48702 6.77535 6.90100 7.51742 7.87730 8.33896 8.81849 9.40823 10.93464 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003166 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.979500 B = 8841.823946 C = 9946.552059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.079 0.921 9 C -0.007 4.007 10 C -0.581 4.581 11 S 2.597 3.403 12 O -0.955 6.955 13 O -0.953 6.953 14 N -0.998 5.998 15 C 0.118 3.882 16 C -0.090 4.090 17 H 0.090 0.910 18 C -0.082 4.082 19 C -0.123 4.123 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.119 4.119 23 C -0.108 4.108 24 C 0.164 3.836 25 H 0.112 0.888 26 C 0.469 3.531 27 O -0.497 6.497 28 O -0.515 6.515 29 H 0.267 0.733 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.245 -21.053 -0.589 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.097 0.903 9 C -0.046 4.046 10 C -0.714 4.714 11 S 2.697 3.303 12 O -0.946 6.946 13 O -0.943 6.943 14 N -0.834 5.834 15 C -0.007 4.007 16 C -0.110 4.110 17 H 0.108 0.892 18 C -0.101 4.101 19 C -0.161 4.161 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.147 4.147 24 C 0.055 3.945 25 H 0.130 0.870 26 C 0.308 3.692 27 O -0.383 6.383 28 O -0.327 6.327 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.145 0.855 33 H 0.145 0.855 34 H 0.107 0.893 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.116 0.884 46 H 0.104 0.896 47 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 16.596 -20.111 -0.953 26.092 hybrid contribution 0.267 0.952 0.329 1.043 sum 16.863 -19.158 -0.623 25.530 Atomic orbital electron populations 1.69877 1.06189 1.27299 1.49885 1.24973 0.94823 0.99152 0.94079 0.86939 0.80723 0.83703 0.79206 1.19594 1.20674 1.18634 1.20826 0.87654 0.94959 1.52431 0.90328 1.19425 0.99990 0.87315 0.97912 1.30355 1.20700 1.09288 1.11032 1.05659 0.78965 0.71252 0.74453 1.93547 1.78924 1.77030 1.45081 1.93542 1.78732 1.76537 1.45510 1.58887 1.83686 1.28866 1.11924 1.22184 0.99636 0.91299 0.87550 1.22469 1.00441 0.94460 0.93659 0.89180 1.22117 1.00333 0.93243 0.94418 1.22463 1.01354 0.96676 0.95600 1.22127 1.01486 0.95195 0.97495 1.22125 1.01470 0.98042 0.94658 1.22408 1.00127 0.95598 0.97540 1.22674 1.03263 0.92563 0.96208 1.20728 0.94221 0.91735 0.87771 0.87005 1.23758 0.87127 0.77875 0.80394 1.90711 1.44562 1.35655 1.67338 1.84472 1.51328 1.72256 1.24617 0.92331 0.94920 0.95362 0.85470 0.85494 0.89292 0.90581 0.89743 0.91318 0.91212 0.92039 0.91882 0.91947 0.92090 0.91487 0.91546 0.88395 0.89581 0.73141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 21.60 27.47 -169.99 -4.67 16.93 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.83 16 8 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -10.72 6.12 37.16 0.23 -10.49 16 11 S 2.60 47.47 5.45 -107.50 -0.59 46.88 16 12 O -0.96 -19.94 15.56 -64.02 -1.00 -20.94 16 13 O -0.95 -19.94 17.39 -57.54 -1.00 -20.94 16 14 N -1.00 -13.63 3.02 -105.64 -0.32 -13.95 16 15 C 0.12 1.26 6.43 -2.53 -0.02 1.25 16 16 C -0.09 -0.76 2.53 -88.48 -0.22 -0.98 16 17 H 0.09 0.87 8.07 -51.93 -0.42 0.46 16 18 C -0.08 -0.54 2.41 -88.63 -0.21 -0.75 16 19 C -0.12 -0.86 6.13 -25.07 -0.15 -1.01 16 20 C -0.13 -0.78 6.80 -25.62 -0.17 -0.96 16 21 C -0.13 -0.73 6.80 -25.62 -0.17 -0.90 16 22 C -0.12 -0.70 5.71 -25.08 -0.14 -0.84 16 23 C -0.11 -0.82 5.39 -24.90 -0.13 -0.96 16 24 C 0.16 1.87 3.54 -68.11 -0.24 1.63 16 25 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 26 C 0.47 6.45 5.98 36.01 0.22 6.66 16 27 O -0.50 -8.66 16.50 -24.06 -0.40 -9.06 16 28 O -0.52 -5.53 13.42 -39.27 -0.53 -6.05 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 31 H 0.03 0.67 7.57 -51.93 -0.39 0.28 16 32 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 33 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 34 H 0.09 1.04 7.71 -51.93 -0.40 0.64 16 35 H 0.08 0.64 7.97 -51.93 -0.41 0.23 16 36 H 0.08 0.51 8.05 -51.93 -0.42 0.09 16 37 H 0.07 0.52 7.99 -51.93 -0.41 0.10 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.41 8.05 -51.93 -0.42 -0.01 16 45 H 0.10 0.53 8.04 -51.93 -0.42 0.11 16 46 H 0.09 0.57 7.82 -51.93 -0.41 0.16 16 47 H 0.41 2.86 9.10 45.56 0.41 3.27 16 LS Contribution 387.68 15.07 5.84 5.84 Total: -1.00 -37.55 387.68 -10.50 -48.05 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -7.05 Total: -0.11 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.57 Total: -20.46 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.45 Total: -40.14 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -2.92 Total: -56.99 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Atomic # 16 Polarization: 47.47 SS G_CDS: -0.59 Total: 46.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.55 -10.50 -48.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926608481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.115 kcal (2) G-P(sol) polarization free energy of solvation -37.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds