Wall clock time and date at job start Wed Apr 1 2020 02:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00312 * 2 1 4 4 H 1.48490 * 109.47315 * 269.99635 * 3 2 1 5 5 H 1.48495 * 109.46883 * 30.00021 * 3 2 1 6 6 H 1.48509 * 109.46973 * 149.99650 * 3 2 1 7 7 C 1.37879 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99919 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00220 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47189 * 180.02562 * 9 7 2 11 11 S 1.81404 * 109.46897 * 180.02562 * 10 9 7 12 12 O 1.42107 * 110.54328 * 68.57716 * 11 10 9 13 13 O 1.42097 * 110.54295 * 291.82182 * 11 10 9 14 14 N 1.65605 * 104.44729 * 180.19779 * 11 10 9 15 15 C 1.47420 * 125.65046 * 84.21875 * 14 11 10 16 16 C 1.54906 * 104.83514 * 155.82603 * 15 14 11 17 17 H 1.09002 * 111.03452 * 278.92259 * 16 15 14 18 18 C 1.52995 * 111.00346 * 155.08405 * 16 15 14 19 19 C 1.54894 * 110.75675 * 74.47737 * 18 16 15 20 20 C 1.54262 * 104.19345 * 156.25760 * 19 18 16 21 21 C 1.53870 * 106.60143 * 336.38352 * 20 19 18 22 22 C 1.54262 * 106.59874 * 0.02562 * 21 20 19 23 23 C 1.55152 * 101.58253 * 37.00654 * 16 15 14 24 24 C 1.47020 * 125.64801 * 264.16283 * 14 11 10 25 25 H 1.09006 * 109.88063 * 61.68555 * 24 14 11 26 26 C 1.50701 * 110.01125 * 300.59785 * 24 14 11 27 27 O 1.20825 * 119.99765 * 334.65969 * 26 24 14 28 28 O 1.34235 * 120.00099 * 154.66482 * 26 24 14 29 29 H 0.97007 * 119.99750 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.46767 * 60.00341 * 9 7 2 31 31 H 1.09002 * 109.47378 * 300.00743 * 9 7 2 32 32 H 1.09003 * 109.47052 * 60.00437 * 10 9 7 33 33 H 1.09003 * 109.47221 * 299.99859 * 10 9 7 34 34 H 1.09004 * 110.36536 * 36.98153 * 15 14 11 35 35 H 1.09001 * 110.36555 * 274.66393 * 15 14 11 36 36 H 1.08995 * 110.67526 * 311.03644 * 18 16 15 37 37 H 1.08992 * 110.48697 * 37.57565 * 19 18 16 38 38 H 1.09004 * 110.47859 * 274.93089 * 19 18 16 39 39 H 1.09004 * 110.02977 * 217.10500 * 20 19 18 40 40 H 1.08999 * 110.03458 * 95.67479 * 20 19 18 41 41 H 1.09005 * 110.03372 * 119.29112 * 21 20 19 42 42 H 1.08998 * 110.03723 * 240.67277 * 21 20 19 43 43 H 1.09003 * 110.49079 * 142.28324 * 22 21 20 44 44 H 1.08996 * 110.48754 * 264.93036 * 22 21 20 45 45 H 1.09002 * 110.71817 * 82.86142 * 23 16 15 46 46 H 1.09001 * 110.72398 * 206.13425 * 23 16 15 47 47 H 0.96700 * 116.99950 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7002 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 16 5.8354 -2.6368 0.0025 12 8 6.3331 -2.1512 1.2418 13 8 6.3351 -2.1417 -1.2322 14 7 6.2486 -4.2404 -0.0033 15 6 6.3470 -5.0980 -1.1984 16 6 7.3183 -6.2343 -0.7922 17 1 8.3558 -5.9103 -0.8746 18 6 7.0715 -7.4917 -1.6281 19 6 7.6198 -7.3118 -3.0655 20 6 7.8658 -8.7523 -3.5596 21 6 8.0478 -9.6227 -2.3039 22 6 7.9053 -8.6809 -1.0904 23 6 6.9243 -6.4658 0.6905 24 6 6.5790 -5.0444 1.1824 25 1 5.7220 -5.0827 1.8549 26 6 7.7642 -4.4472 1.8964 27 8 8.5597 -3.7725 1.2867 28 8 7.9360 -4.6650 3.2098 29 1 -0.4850 0.8401 -0.0004 30 1 3.8744 -0.6802 0.8912 31 1 3.8752 -0.6805 -0.8888 32 1 3.6584 -3.1503 -0.8893 33 1 3.6577 -3.1508 0.8907 34 1 6.7532 -4.5337 -2.0379 35 1 5.3695 -5.5075 -1.4530 36 1 6.0104 -7.7406 -1.6447 37 1 8.5531 -6.7491 -3.0501 38 1 6.8829 -6.8131 -3.6951 39 1 8.7666 -8.7881 -4.1724 40 1 7.0083 -9.1013 -4.1348 41 1 7.2785 -10.3943 -2.2696 42 1 9.0364 -10.0816 -2.3076 43 1 7.3772 -9.1815 -0.2788 44 1 8.8847 -8.3390 -0.7558 45 1 6.0552 -7.1199 0.7609 46 1 7.7632 -6.8755 1.2531 47 1 8.7112 -4.2615 3.6240 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926608481.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:18 Heat of formation + Delta-G solvation = -205.853888 kcal Electronic energy + Delta-G solvation = -29596.218522 eV Core-core repulsion = 25483.074831 eV Total energy + Delta-G solvation = -4113.143690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66806 -39.94002 -38.29837 -38.05245 -37.13530 -36.96714 -35.93376 -33.51077 -32.84425 -31.28907 -29.40737 -28.05355 -27.85912 -25.11833 -23.33737 -22.74744 -22.17620 -20.90045 -20.76208 -19.96116 -19.43712 -19.11177 -18.65242 -17.99036 -17.21843 -16.96839 -16.68072 -16.47638 -16.30398 -16.03657 -15.50188 -15.29456 -14.85011 -14.67525 -14.61575 -14.26347 -14.13332 -13.85537 -13.72620 -13.56351 -13.33709 -13.27117 -13.11335 -13.00908 -12.90781 -12.66563 -12.50661 -12.28831 -12.24546 -12.04990 -11.98831 -11.82056 -11.73858 -11.59258 -11.42782 -11.34287 -11.29344 -11.23295 -11.14407 -10.86311 -10.16906 -8.38457 -6.43868 -0.92776 1.16017 1.29422 1.31961 1.41352 1.52546 2.05330 2.27290 2.79012 2.90033 2.95424 3.31144 3.49672 3.72880 3.81509 3.88193 3.94595 4.04132 4.11831 4.24313 4.25102 4.44317 4.51913 4.57784 4.68025 4.69977 4.71159 4.78963 4.85478 4.88332 4.93123 4.98627 4.99528 5.03907 5.05595 5.10885 5.21611 5.22646 5.31110 5.41603 5.43949 5.45826 5.60822 5.61266 5.66061 6.14713 6.61985 6.96204 7.20560 8.76784 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014074 B = 0.003166 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.979500 B = 8841.823946 C = 9946.552059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.018 3.982 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.254 1.254 7 C -0.525 4.525 8 H 0.056 0.944 9 C -0.018 4.018 10 C -0.578 4.578 11 S 2.616 3.384 12 O -0.985 6.985 13 O -0.987 6.987 14 N -0.996 5.996 15 C 0.106 3.894 16 C -0.083 4.083 17 H 0.070 0.930 18 C -0.075 4.075 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.125 4.125 22 C -0.117 4.117 23 C -0.097 4.097 24 C 0.151 3.849 25 H 0.138 0.862 26 C 0.465 3.535 27 O -0.545 6.545 28 O -0.506 6.506 29 H 0.270 0.730 30 H 0.030 0.970 31 H 0.027 0.973 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.071 0.929 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.132 0.868 46 H 0.100 0.900 47 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.657 -23.121 -0.009 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.181 4.181 3 Si 0.742 3.258 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.178 1.178 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.057 4.057 10 C -0.710 4.710 11 S 2.716 3.284 12 O -0.976 6.976 13 O -0.977 6.977 14 N -0.834 5.834 15 C -0.018 4.018 16 C -0.103 4.103 17 H 0.089 0.911 18 C -0.094 4.094 19 C -0.166 4.166 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.154 4.154 23 C -0.136 4.136 24 C 0.043 3.957 25 H 0.155 0.845 26 C 0.306 3.694 27 O -0.434 6.434 28 O -0.319 6.319 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.150 0.850 46 H 0.118 0.882 47 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 17.012 -22.182 -0.351 27.957 hybrid contribution 0.173 1.480 0.172 1.500 sum 17.185 -20.702 -0.179 26.906 Atomic orbital electron populations 1.69988 1.07697 1.28390 1.51514 1.25794 0.95592 1.02725 0.94029 0.86110 0.79867 0.79916 0.79879 1.18565 1.19667 1.17805 1.21129 0.89807 0.94103 1.51368 0.92574 1.19385 0.97585 0.91043 0.97684 1.30279 1.21294 1.06251 1.13186 1.04700 0.78407 0.72197 0.73079 1.93500 1.79309 1.78638 1.46141 1.93495 1.79194 1.78252 1.46785 1.58442 1.83103 1.27812 1.14075 1.22536 1.01853 0.91363 0.86008 1.22389 0.98754 0.94339 0.94822 0.91126 1.22092 1.01315 0.92466 0.93482 1.22491 1.00797 0.97053 0.96289 1.22132 1.01531 0.94780 0.97900 1.22133 1.01819 0.98079 0.94248 1.22405 0.99890 0.95178 0.97949 1.22798 1.05252 0.90523 0.94994 1.21277 0.94215 0.92948 0.87262 0.84471 1.24361 0.87154 0.76928 0.80927 1.90698 1.46376 1.37938 1.68397 1.84441 1.52148 1.71925 1.23355 0.92035 0.95196 0.95422 0.83487 0.83363 0.91049 0.87605 0.88207 0.92562 0.91445 0.92344 0.91524 0.91187 0.92041 0.89888 0.92132 0.84965 0.88198 0.71387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.96 21.45 0.30 -56.72 16 2 C 0.02 1.02 5.47 84.66 0.46 1.48 16 3 Si 0.92 44.11 27.47 68.60 1.88 46.00 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.25 -11.77 6.54 99.48 0.65 -11.12 16 7 C -0.53 -29.36 9.66 25.60 0.25 -29.11 16 8 H 0.06 3.30 7.99 -2.91 -0.02 3.28 16 9 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 10 C -0.58 -20.53 6.12 71.98 0.44 -20.09 16 11 S 2.62 93.88 5.45 -56.49 -0.31 93.58 16 12 O -0.99 -40.83 15.56 -121.46 -1.89 -42.72 16 13 O -0.99 -41.54 17.39 -127.65 -2.22 -43.76 16 14 N -1.00 -25.58 3.02 -488.13 -1.47 -27.06 16 15 C 0.11 2.08 6.43 86.85 0.56 2.64 16 16 C -0.08 -1.21 2.53 -9.41 -0.02 -1.24 16 17 H 0.07 1.33 8.07 -2.39 -0.02 1.31 16 18 C -0.07 -0.77 2.41 -9.51 -0.02 -0.80 16 19 C -0.13 -1.63 6.13 31.67 0.19 -1.44 16 20 C -0.13 -1.37 6.80 31.32 0.21 -1.16 16 21 C -0.13 -1.15 6.80 31.32 0.21 -0.94 16 22 C -0.12 -1.02 5.71 31.66 0.18 -0.83 16 23 C -0.10 -1.12 5.39 31.78 0.17 -0.95 16 24 C 0.15 3.04 3.54 44.60 0.16 3.20 16 25 H 0.14 2.09 8.14 -2.38 -0.02 2.07 16 26 C 0.46 12.14 5.98 71.24 0.43 12.56 16 27 O -0.54 -18.99 16.50 27.05 0.45 -18.54 16 28 O -0.51 -9.88 13.42 -51.46 -0.69 -10.57 16 29 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 30 H 0.03 1.42 7.20 -2.39 -0.02 1.40 16 31 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 32 H 0.15 4.58 8.14 -2.39 -0.02 4.56 16 33 H 0.15 4.57 8.14 -2.39 -0.02 4.55 16 34 H 0.07 1.65 7.71 -2.39 -0.02 1.63 16 35 H 0.11 1.44 7.97 -2.39 -0.02 1.42 16 36 H 0.10 0.79 8.05 -2.39 -0.02 0.77 16 37 H 0.06 0.84 7.99 -2.39 -0.02 0.82 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.06 0.61 8.05 -2.39 -0.02 0.59 16 45 H 0.13 0.69 8.04 -2.39 -0.02 0.67 16 46 H 0.10 0.94 7.82 -2.39 -0.02 0.92 16 47 H 0.42 5.31 9.10 -74.06 -0.67 4.63 16 Total: -1.00 -82.88 387.68 -0.38 -83.26 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 0.23 Total: 13.92 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.34 Total: -37.39 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -1.17 Total: -83.77 kcal Atomic # 8 Polarization: -111.24 SS G_CDS: -4.35 Total: -115.59 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: 93.88 SS G_CDS: -0.31 Total: 93.58 kcal Total: -82.88 -0.38 -83.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926608481.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.598 kcal (2) G-P(sol) polarization free energy of solvation -82.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds