Wall clock time and date at job start Wed Apr 1 2020 02:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86802 * 120.00215 * 2 1 4 4 H 1.48496 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47259 * 300.00630 * 3 2 1 6 6 H 1.48499 * 109.46804 * 60.00219 * 3 2 1 7 7 C 1.37876 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47108 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.46555 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54256 * 68.37614 * 11 10 9 13 13 O 1.42096 * 110.54539 * 291.62301 * 11 10 9 14 14 N 1.65599 * 104.44549 * 179.97438 * 11 10 9 15 15 C 1.47425 * 125.65161 * 269.97774 * 14 11 10 16 16 C 1.54909 * 104.83375 * 204.15178 * 15 14 11 17 17 H 1.09004 * 111.03749 * 81.07536 * 16 15 14 18 18 C 1.53000 * 111.00679 * 204.91348 * 16 15 14 19 19 C 1.54260 * 110.03157 * 290.10673 * 18 16 15 20 20 C 1.54971 * 104.15718 * 217.13362 * 19 18 16 21 21 C 1.54887 * 102.77724 * 37.88745 * 20 19 18 22 22 C 1.53871 * 110.03641 * 172.88320 * 18 16 15 23 23 C 1.55156 * 101.58170 * 322.98701 * 16 15 14 24 24 C 1.47031 * 125.64736 * 90.00114 * 14 11 10 25 25 H 1.08994 * 109.87878 * 298.33459 * 24 14 11 26 26 C 1.50702 * 109.88194 * 59.50264 * 24 14 11 27 27 O 1.20826 * 120.00045 * 17.80795 * 26 24 14 28 28 O 1.34229 * 119.99653 * 197.80894 * 26 24 14 29 29 H 0.97003 * 120.00043 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00270 * 9 7 2 31 31 H 1.08998 * 109.46588 * 300.00631 * 9 7 2 32 32 H 1.08993 * 109.46826 * 60.00071 * 10 9 7 33 33 H 1.08999 * 109.46905 * 299.99413 * 10 9 7 34 34 H 1.09000 * 110.36875 * 85.31214 * 15 14 11 35 35 H 1.09003 * 110.45479 * 323.03259 * 15 14 11 36 36 H 1.09005 * 110.01412 * 51.48988 * 18 16 15 37 37 H 1.09005 * 110.48758 * 335.77808 * 19 18 16 38 38 H 1.09002 * 110.49278 * 98.42543 * 19 18 16 39 39 H 1.08995 * 110.71949 * 279.56894 * 20 19 18 40 40 H 1.09005 * 110.76500 * 156.22015 * 20 19 18 41 41 H 1.09006 * 110.48544 * 203.40496 * 21 20 19 42 42 H 1.08996 * 110.59939 * 80.81550 * 21 20 19 43 43 H 1.08998 * 110.03169 * 238.57083 * 22 18 16 44 44 H 1.09003 * 110.03171 * 359.95417 * 22 18 16 45 45 H 1.09004 * 110.72307 * 277.14264 * 23 16 15 46 46 H 1.09000 * 110.72519 * 153.86482 * 23 16 15 47 47 H 0.96701 * 116.99555 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6638 -5.4201 1.2354 14 7 2.5204 -6.3927 -0.0020 15 6 3.1334 -6.9941 -1.2002 16 6 3.6622 -8.3710 -0.7266 17 1 2.8613 -9.1099 -0.7009 18 6 4.8168 -8.8484 -1.6096 19 6 4.2909 -9.2222 -3.0108 20 6 5.1342 -10.4579 -3.4149 21 6 5.2710 -11.2309 -2.0797 22 6 5.4402 -10.1247 -1.0179 23 6 4.1580 -8.0384 0.7055 24 6 3.1322 -6.9933 1.1925 25 1 3.6359 -6.2240 1.7776 26 6 2.0731 -7.6654 2.0278 27 8 1.0008 -7.9355 1.5409 28 8 2.3211 -7.9640 3.3128 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6246 -2.5570 0.8896 32 1 2.8719 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8906 34 1 3.9559 -6.3743 -1.5573 35 1 2.3883 -7.1235 -1.9852 36 1 5.5723 -8.0668 -1.6907 37 1 3.2330 -9.4810 -2.9647 38 1 4.4539 -8.4027 -3.7107 39 1 6.1123 -10.1525 -3.7865 40 1 4.6083 -11.0588 -4.1570 41 1 6.1489 -11.8767 -2.1010 42 1 4.3729 -11.8158 -1.8815 43 1 6.4984 -9.9628 -0.8126 44 1 4.9206 -10.4036 -0.1011 45 1 5.1603 -7.6107 0.6770 46 1 4.1341 -8.9259 1.3378 47 1 1.6110 -8.3943 3.8084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926608482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:22 Heat of formation + Delta-G solvation = -181.517505 kcal Electronic energy + Delta-G solvation = -29599.897213 eV Core-core repulsion = 25487.808828 eV Total energy + Delta-G solvation = -4112.088385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.68303 -39.22264 -37.26523 -36.60811 -35.88946 -35.39199 -33.90955 -31.98374 -31.17944 -30.44969 -28.87574 -27.27376 -25.62073 -24.15743 -22.09738 -21.67535 -21.23486 -20.73214 -19.80712 -18.57247 -18.01001 -17.68073 -16.96972 -16.56011 -16.18162 -15.59005 -15.44857 -15.40698 -15.11429 -14.60136 -14.44489 -13.93299 -13.71052 -13.68231 -13.36023 -13.26054 -12.89917 -12.75502 -12.52316 -12.20499 -11.77427 -11.73003 -11.56257 -11.50401 -11.48355 -11.37410 -11.30529 -11.22638 -11.10785 -10.96814 -10.92132 -10.78531 -10.77295 -10.63450 -10.44882 -10.41189 -10.36934 -9.78838 -9.38047 -8.91583 -8.52299 -6.13764 -4.19707 0.65482 2.27537 2.79524 3.10500 3.24371 3.31512 3.34884 3.97372 4.11484 4.29439 4.33713 4.39044 4.44956 4.45559 4.70167 4.78796 4.96760 5.07105 5.17100 5.20445 5.21429 5.25519 5.29062 5.33669 5.37810 5.42087 5.50368 5.52654 5.57801 5.61058 5.63767 5.64828 5.72482 5.82429 5.93948 5.97968 6.00695 6.05250 6.19552 6.31434 6.45024 6.56044 7.27994 7.33586 7.79036 7.95895 8.15334 8.83867 9.45184 10.97336 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003030 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.799411 B = 9237.619795 C =10252.056523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.589 4.589 11 S 2.600 3.400 12 O -0.955 6.955 13 O -0.951 6.951 14 N -0.999 5.999 15 C 0.119 3.881 16 C -0.092 4.092 17 H 0.088 0.912 18 C -0.081 4.081 19 C -0.125 4.125 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.110 4.110 24 C 0.164 3.836 25 H 0.112 0.888 26 C 0.464 3.536 27 O -0.486 6.486 28 O -0.518 6.518 29 H 0.265 0.735 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.119 0.881 33 H 0.121 0.879 34 H 0.074 0.926 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.086 0.914 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.153 -22.156 -0.653 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.723 4.723 11 S 2.700 3.300 12 O -0.945 6.945 13 O -0.941 6.941 14 N -0.834 5.834 15 C -0.006 4.006 16 C -0.112 4.112 17 H 0.107 0.893 18 C -0.100 4.100 19 C -0.162 4.162 20 C -0.163 4.163 21 C -0.163 4.163 22 C -0.158 4.158 23 C -0.148 4.148 24 C 0.055 3.945 25 H 0.130 0.870 26 C 0.302 3.698 27 O -0.371 6.371 28 O -0.330 6.330 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.105 0.895 47 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 12.979 -22.067 -1.020 25.621 hybrid contribution 0.376 1.063 0.450 1.214 sum 13.355 -21.004 -0.569 24.897 Atomic orbital electron populations 1.69965 1.06142 1.27137 1.49543 1.25079 0.94980 0.99590 0.94884 0.86403 0.79917 0.83118 0.77791 1.19608 1.20766 1.20774 1.21030 0.93092 0.89653 1.52159 0.91934 1.18978 0.92707 0.90521 0.98924 1.30529 1.13804 1.17849 1.10085 1.05634 0.74133 0.75809 0.74455 1.93530 1.70424 1.85143 1.45420 1.93556 1.70443 1.84886 1.45247 1.58992 1.58784 1.54977 1.10675 1.22142 0.97942 0.93053 0.87425 1.22582 0.97938 0.96958 0.93755 0.89317 1.21757 0.96169 0.97678 0.94384 1.22505 1.00035 0.97884 0.95781 1.22504 1.00029 0.96667 0.97087 1.22361 1.01453 0.97525 0.95003 1.22221 1.00671 0.94373 0.98571 1.22703 0.97920 0.97575 0.96628 1.20716 0.90399 0.96908 0.86488 0.87043 1.23745 0.88623 0.76656 0.80771 1.90730 1.25237 1.48633 1.72478 1.84461 1.49336 1.74419 1.24813 0.92538 0.94824 0.94838 0.86237 0.86110 0.90805 0.89338 0.90256 0.91151 0.91246 0.91580 0.91737 0.91963 0.91761 0.91706 0.91547 0.88530 0.89531 0.73185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.48 6.12 37.16 0.23 -11.25 16 11 S 2.60 50.27 5.46 -107.50 -0.59 49.69 16 12 O -0.95 -21.11 17.28 -57.54 -0.99 -22.11 16 13 O -0.95 -21.16 15.05 -66.01 -0.99 -22.16 16 14 N -1.00 -14.28 3.01 -105.63 -0.32 -14.60 16 15 C 0.12 1.34 6.24 -2.53 -0.02 1.33 16 16 C -0.09 -0.81 2.27 -88.47 -0.20 -1.01 16 17 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 18 C -0.08 -0.55 2.45 -89.51 -0.22 -0.77 16 19 C -0.12 -0.89 6.08 -25.03 -0.15 -1.04 16 20 C -0.13 -0.79 6.91 -24.70 -0.17 -0.96 16 21 C -0.13 -0.77 6.83 -25.07 -0.17 -0.94 16 22 C -0.12 -0.73 6.08 -25.62 -0.16 -0.88 16 23 C -0.11 -0.87 5.16 -24.90 -0.13 -1.00 16 24 C 0.16 1.94 3.61 -68.10 -0.25 1.69 16 25 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 26 C 0.46 6.59 6.31 36.01 0.23 6.81 16 27 O -0.49 -8.89 15.61 -25.77 -0.40 -9.30 16 28 O -0.52 -5.65 13.42 -39.26 -0.53 -6.18 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 33 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 34 H 0.07 0.66 7.99 -51.93 -0.41 0.25 16 35 H 0.09 1.10 7.67 -51.93 -0.40 0.70 16 36 H 0.08 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.07 0.56 7.82 -51.93 -0.41 0.16 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.40 6.89 -51.93 -0.36 0.05 16 45 H 0.10 0.56 8.04 -51.93 -0.42 0.14 16 46 H 0.09 0.60 7.39 -51.93 -0.38 0.21 16 47 H 0.41 2.96 9.10 45.56 0.41 3.38 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -37.97 388.26 -10.80 -48.78 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.99 Total: 0.43 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.55 Total: -20.66 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.42 Total: -40.52 kcal Atomic # 8 Polarization: -56.82 SS G_CDS: -2.92 Total: -59.74 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.59 Total: 49.69 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -37.97 -10.80 -48.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926608482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.741 kcal (2) G-P(sol) polarization free energy of solvation -37.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds