Wall clock time and date at job start Wed Apr 1 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31504 * 1 3 3 Si 1.86802 * 120.00215 * 2 1 4 4 H 1.48496 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47259 * 300.00630 * 3 2 1 6 6 H 1.48499 * 109.46804 * 60.00219 * 3 2 1 7 7 C 1.37876 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.08010 * 120.00035 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00193 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47108 * 180.02562 * 9 7 2 11 11 S 1.81403 * 109.46555 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54256 * 68.37614 * 11 10 9 13 13 O 1.42096 * 110.54539 * 291.62301 * 11 10 9 14 14 N 1.65599 * 104.44549 * 179.97438 * 11 10 9 15 15 C 1.47425 * 125.65161 * 269.97774 * 14 11 10 16 16 C 1.54909 * 104.83375 * 204.15178 * 15 14 11 17 17 H 1.09004 * 111.03749 * 81.07536 * 16 15 14 18 18 C 1.53000 * 111.00679 * 204.91348 * 16 15 14 19 19 C 1.54260 * 110.03157 * 290.10673 * 18 16 15 20 20 C 1.54971 * 104.15718 * 217.13362 * 19 18 16 21 21 C 1.54887 * 102.77724 * 37.88745 * 20 19 18 22 22 C 1.53871 * 110.03641 * 172.88320 * 18 16 15 23 23 C 1.55156 * 101.58170 * 322.98701 * 16 15 14 24 24 C 1.47031 * 125.64736 * 90.00114 * 14 11 10 25 25 H 1.08994 * 109.87878 * 298.33459 * 24 14 11 26 26 C 1.50702 * 109.88194 * 59.50264 * 24 14 11 27 27 O 1.20826 * 120.00045 * 17.80795 * 26 24 14 28 28 O 1.34229 * 119.99653 * 197.80894 * 26 24 14 29 29 H 0.97003 * 120.00043 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.46851 * 60.00270 * 9 7 2 31 31 H 1.08998 * 109.46588 * 300.00631 * 9 7 2 32 32 H 1.08993 * 109.46826 * 60.00071 * 10 9 7 33 33 H 1.08999 * 109.46905 * 299.99413 * 10 9 7 34 34 H 1.09000 * 110.36875 * 85.31214 * 15 14 11 35 35 H 1.09003 * 110.45479 * 323.03259 * 15 14 11 36 36 H 1.09005 * 110.01412 * 51.48988 * 18 16 15 37 37 H 1.09005 * 110.48758 * 335.77808 * 19 18 16 38 38 H 1.09002 * 110.49278 * 98.42543 * 19 18 16 39 39 H 1.08995 * 110.71949 * 279.56894 * 20 19 18 40 40 H 1.09005 * 110.76500 * 156.22015 * 20 19 18 41 41 H 1.09006 * 110.48544 * 203.40496 * 21 20 19 42 42 H 1.08996 * 110.59939 * 80.81550 * 21 20 19 43 43 H 1.08998 * 110.03169 * 238.57083 * 22 18 16 44 44 H 1.09003 * 110.03171 * 359.95417 * 22 18 16 45 45 H 1.09004 * 110.72307 * 277.14264 * 23 16 15 46 46 H 1.09000 * 110.72519 * 153.86482 * 23 16 15 47 47 H 0.96701 * 116.99555 * 179.97438 * 28 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3963 1.2125 7 6 2.0044 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3382 -5.2330 -0.0013 12 8 0.6647 -5.4193 -1.2386 13 8 0.6638 -5.4201 1.2354 14 7 2.5204 -6.3927 -0.0020 15 6 3.1334 -6.9941 -1.2002 16 6 3.6622 -8.3710 -0.7266 17 1 2.8613 -9.1099 -0.7009 18 6 4.8168 -8.8484 -1.6096 19 6 4.2909 -9.2222 -3.0108 20 6 5.1342 -10.4579 -3.4149 21 6 5.2710 -11.2309 -2.0797 22 6 5.4402 -10.1247 -1.0179 23 6 4.1580 -8.0384 0.7055 24 6 3.1322 -6.9933 1.1925 25 1 3.6359 -6.2240 1.7776 26 6 2.0731 -7.6654 2.0278 27 8 1.0008 -7.9355 1.5409 28 8 2.3211 -7.9640 3.3128 29 1 -0.4850 0.8401 0.0004 30 1 0.6240 -2.5567 -0.8904 31 1 0.6246 -2.5570 0.8896 32 1 2.8719 -3.6043 0.8894 33 1 2.8719 -3.6043 -0.8906 34 1 3.9559 -6.3743 -1.5573 35 1 2.3883 -7.1235 -1.9852 36 1 5.5723 -8.0668 -1.6907 37 1 3.2330 -9.4810 -2.9647 38 1 4.4539 -8.4027 -3.7107 39 1 6.1123 -10.1525 -3.7865 40 1 4.6083 -11.0588 -4.1570 41 1 6.1489 -11.8767 -2.1010 42 1 4.3729 -11.8158 -1.8815 43 1 6.4984 -9.9628 -0.8126 44 1 4.9206 -10.4036 -0.1011 45 1 5.1603 -7.6107 0.6770 46 1 4.1341 -8.9259 1.3378 47 1 1.6110 -8.3943 3.8084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926608482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:21 Heat of formation + Delta-G solvation = -208.523044 kcal Electronic energy + Delta-G solvation = -29601.068261 eV Core-core repulsion = 25487.808828 eV Total energy + Delta-G solvation = -4113.259434 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.66031 -39.99034 -38.24318 -38.00953 -37.08069 -36.92441 -35.92850 -33.16827 -32.78250 -31.28999 -29.39997 -27.97042 -27.59694 -25.10098 -23.66056 -22.73323 -22.22441 -21.32241 -20.41166 -19.87332 -19.23711 -18.99686 -18.40599 -17.96834 -17.17920 -16.92204 -16.63486 -16.56508 -16.39737 -16.06251 -15.39961 -15.18646 -14.74142 -14.60079 -14.44380 -14.31425 -14.02352 -13.77743 -13.69578 -13.50322 -13.27777 -13.21763 -12.96727 -12.95102 -12.79682 -12.65350 -12.45865 -12.30574 -12.25096 -12.10128 -11.85024 -11.79063 -11.77196 -11.53742 -11.45527 -11.41829 -11.29420 -11.16630 -11.09296 -10.67753 -10.14807 -8.27513 -6.42420 -0.86662 1.21648 1.41228 1.42192 1.55577 1.59115 2.07355 2.37554 2.87387 2.94993 3.06228 3.32003 3.52711 3.73551 3.85892 3.89724 3.99044 4.06676 4.14759 4.25166 4.26490 4.45649 4.60849 4.63887 4.69557 4.70294 4.76718 4.78801 4.86968 4.89659 4.94470 5.02056 5.02524 5.12896 5.17755 5.18618 5.22881 5.26185 5.33715 5.42066 5.48295 5.59121 5.64363 5.66371 5.66786 6.02432 6.71839 6.99261 7.28342 8.85304 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.013915 B = 0.003030 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.799411 B = 9237.619795 C =10252.056523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.977 3.023 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.081 0.919 9 C 0.020 3.980 10 C -0.579 4.579 11 S 2.616 3.384 12 O -0.994 6.994 13 O -0.987 6.987 14 N -0.996 5.996 15 C 0.107 3.893 16 C -0.085 4.085 17 H 0.067 0.933 18 C -0.073 4.073 19 C -0.130 4.130 20 C -0.124 4.124 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.097 4.097 24 C 0.151 3.849 25 H 0.141 0.859 26 C 0.459 3.541 27 O -0.539 6.539 28 O -0.507 6.507 29 H 0.267 0.733 30 H 0.003 0.997 31 H 0.004 0.996 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.106 0.894 35 H 0.066 0.934 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.133 0.867 46 H 0.101 0.899 47 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.537 -22.310 -0.161 29.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.801 3.199 4 H -0.174 1.174 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.575 4.575 8 H 0.099 0.901 9 C -0.019 4.019 10 C -0.712 4.712 11 S 2.716 3.284 12 O -0.984 6.984 13 O -0.978 6.978 14 N -0.834 5.834 15 C -0.016 4.016 16 C -0.105 4.105 17 H 0.086 0.914 18 C -0.092 4.092 19 C -0.168 4.168 20 C -0.162 4.162 21 C -0.166 4.166 22 C -0.156 4.156 23 C -0.135 4.135 24 C 0.043 3.957 25 H 0.158 0.842 26 C 0.300 3.700 27 O -0.428 6.428 28 O -0.319 6.319 29 H 0.076 0.924 30 H 0.021 0.979 31 H 0.022 0.978 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.124 0.876 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.152 0.848 46 H 0.119 0.881 47 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 17.380 -22.235 -0.505 28.226 hybrid contribution -1.011 0.986 0.325 1.449 sum 16.368 -21.250 -0.180 26.824 Atomic orbital electron populations 1.70123 1.08272 1.28341 1.50921 1.26184 0.95857 1.04131 0.94309 0.85212 0.79319 0.77667 0.77736 1.17445 1.20448 1.20437 1.21543 0.94147 0.90388 1.51453 0.90067 1.18836 0.93640 0.93289 0.96147 1.30358 1.12685 1.15305 1.12870 1.04712 0.74469 0.76285 0.72900 1.93472 1.72253 1.85872 1.46847 1.93501 1.72192 1.85565 1.46504 1.58470 1.58154 1.53738 1.13041 1.22504 0.98154 0.95042 0.85931 1.22514 0.98141 0.94865 0.94990 0.91429 1.21746 0.95534 0.98631 0.93318 1.22538 0.99290 0.98441 0.96538 1.22504 1.00173 0.96228 0.97261 1.22379 1.01463 0.97752 0.94965 1.22222 1.01507 0.93548 0.98290 1.22828 0.98132 0.97108 0.95466 1.21303 0.90254 0.98606 0.85586 0.84199 1.24394 0.88404 0.75680 0.81484 1.90720 1.27481 1.51010 1.73610 1.84427 1.49868 1.74021 1.23604 0.92386 0.97887 0.97808 0.83323 0.83405 0.87586 0.91510 0.88377 0.92887 0.91103 0.90705 0.92109 0.91047 0.92692 0.90094 0.91503 0.84842 0.88089 0.71456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 2 C -0.01 -0.38 5.46 84.66 0.46 0.09 16 3 Si 0.98 43.01 29.54 68.60 2.03 45.04 16 4 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.54 -29.63 9.11 25.60 0.23 -29.40 16 8 H 0.08 4.07 7.74 -2.91 -0.02 4.05 16 9 C 0.02 1.06 4.98 29.85 0.15 1.21 16 10 C -0.58 -22.09 6.12 71.98 0.44 -21.64 16 11 S 2.62 103.08 5.46 -56.49 -0.31 102.77 16 12 O -0.99 -46.02 17.28 -127.65 -2.21 -48.23 16 13 O -0.99 -45.48 15.05 -119.55 -1.80 -47.28 16 14 N -1.00 -27.36 3.01 -488.10 -1.47 -28.83 16 15 C 0.11 2.26 6.24 86.85 0.54 2.80 16 16 C -0.08 -1.31 2.27 -9.40 -0.02 -1.33 16 17 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 18 C -0.07 -0.78 2.45 -10.07 -0.02 -0.80 16 19 C -0.13 -1.70 6.08 31.70 0.19 -1.51 16 20 C -0.12 -1.37 6.91 31.91 0.22 -1.15 16 21 C -0.13 -1.31 6.83 31.67 0.22 -1.09 16 22 C -0.12 -1.04 6.08 31.32 0.19 -0.84 16 23 C -0.10 -1.16 5.16 31.78 0.16 -1.00 16 24 C 0.15 3.18 3.61 44.59 0.16 3.34 16 25 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 26 C 0.46 12.65 6.31 71.24 0.45 13.10 16 27 O -0.54 -20.26 15.61 28.68 0.45 -19.81 16 28 O -0.51 -10.19 13.42 -51.41 -0.69 -10.88 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.15 4.75 8.14 -2.39 -0.02 4.73 16 33 H 0.15 4.79 8.14 -2.39 -0.02 4.77 16 34 H 0.11 1.55 7.99 -2.39 -0.02 1.53 16 35 H 0.07 1.69 7.67 -2.39 -0.02 1.67 16 36 H 0.10 0.74 8.08 -2.38 -0.02 0.72 16 37 H 0.05 0.86 7.82 -2.38 -0.02 0.84 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 44 H 0.07 0.60 6.89 -2.39 -0.02 0.58 16 45 H 0.13 0.71 8.04 -2.39 -0.02 0.69 16 46 H 0.10 0.99 7.39 -2.39 -0.02 0.98 16 47 H 0.42 5.69 9.10 -74.06 -0.67 5.01 16 Total: -1.00 -86.96 388.26 -0.05 -87.01 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: 0.29 Total: 15.81 kcal Atomic # 6 Polarization: -41.60 SS G_CDS: 3.37 Total: -38.23 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -1.18 Total: -86.22 kcal Atomic # 8 Polarization: -121.94 SS G_CDS: -4.25 Total: -126.19 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 103.08 SS G_CDS: -0.31 Total: 102.77 kcal Total: -86.96 -0.05 -87.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926608482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.511 kcal (2) G-P(sol) polarization free energy of solvation -86.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds