Wall clock time and date at job start Wed Apr 1 2020 03:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00372 * 2 1 4 4 H 1.48494 * 109.47297 * 239.99886 * 3 2 1 5 5 H 1.48504 * 109.47252 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46980 * 119.99820 * 3 2 1 7 7 C 1.38811 * 119.99509 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00006 * 180.02562 * 7 2 1 9 9 N 1.36942 * 119.99957 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99552 * 179.97438 * 9 7 2 11 11 H 1.09003 * 110.91807 * 37.45196 * 10 9 7 12 12 C 1.54910 * 111.00680 * 273.54450 * 10 9 7 13 13 N 1.47420 * 104.83396 * 204.92139 * 12 10 9 14 14 C 1.34776 * 125.64724 * 204.16873 * 13 12 10 15 15 O 1.21550 * 119.99887 * 354.77493 * 14 13 12 16 16 C 1.47857 * 119.99960 * 174.78064 * 14 13 12 17 17 C 1.39589 * 120.13105 * 7.66091 * 16 14 13 18 18 C 1.37948 * 119.90365 * 179.74333 * 17 16 14 19 19 C 1.38341 * 120.17233 * 0.51165 * 18 17 16 20 20 C 1.38547 * 120.26774 * 359.76513 * 19 18 17 21 21 F 1.35108 * 119.95520 * 179.97438 * 20 19 18 22 22 C 1.38210 * 120.09207 * 359.97438 * 20 19 18 23 23 C 1.47018 * 108.70516 * 24.12727 * 13 12 10 24 24 C 1.54330 * 107.40332 * 358.86443 * 23 13 12 25 25 H 1.08997 * 110.72534 * 219.52298 * 24 23 13 26 26 N 1.46502 * 110.71823 * 96.24338 * 24 23 13 27 27 C 1.35306 * 125.87077 * 326.17173 * 26 24 23 28 28 C 1.35353 * 106.17745 * 179.90276 * 27 26 24 29 29 N 1.33769 * 106.49369 * 0.35341 * 28 27 26 30 30 N 1.28633 * 108.88749 * 359.77634 * 29 28 27 31 31 H 0.97002 * 119.99204 * 0.02562 * 1 2 3 32 32 H 0.96994 * 119.99898 * 359.97438 * 9 7 2 33 33 H 1.09003 * 110.36129 * 86.07859 * 12 10 9 34 34 H 1.09002 * 110.36563 * 323.75940 * 12 10 9 35 35 H 1.08003 * 120.04850 * 359.97438 * 17 16 14 36 36 H 1.08000 * 119.91197 * 180.25409 * 18 17 16 37 37 H 1.07996 * 119.86917 * 179.74062 * 19 18 17 38 38 H 1.08004 * 120.08885 * 179.97438 * 22 20 19 39 39 H 1.09002 * 109.88296 * 118.35554 * 23 13 12 40 40 H 1.09002 * 109.88488 * 239.36946 * 23 13 12 41 41 H 1.08004 * 126.91148 * 0.02562 * 27 26 24 42 42 H 1.08000 * 126.75458 * 180.12765 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2854 2.7465 0.0006 6 1 3.1040 1.6962 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 2.9525 -3.5898 0.6197 12 6 2.4129 -4.0931 -1.4428 13 7 2.5588 -5.5582 -1.3692 14 6 3.2834 -6.3188 -2.2136 15 8 3.8098 -5.8145 -3.1862 16 6 3.4377 -7.7667 -1.9569 17 6 2.7081 -8.3792 -0.9366 18 6 2.8518 -9.7314 -0.7046 19 6 3.7249 -10.4798 -1.4735 20 6 4.4570 -9.8782 -2.4842 21 9 5.3083 -10.6151 -3.2310 22 6 4.3176 -8.5252 -2.7297 23 6 1.7839 -6.0521 -0.2216 24 6 1.1474 -4.8266 0.4673 25 1 1.1790 -4.9340 1.5516 26 7 -0.2284 -4.6282 0.0045 27 6 -0.6916 -4.8889 -1.2398 28 6 -2.0058 -4.5653 -1.2284 29 7 -2.2769 -4.1209 0.0038 30 7 -1.2029 -4.1707 0.7100 31 1 -0.4849 0.8401 -0.0004 32 1 0.3554 -2.3880 0.0005 33 1 3.3499 -3.6338 -1.7582 34 1 1.6088 -3.8259 -2.1285 35 1 2.0292 -7.7959 -0.3321 36 1 2.2842 -10.2061 0.0821 37 1 3.8367 -11.5373 -1.2849 38 1 4.8886 -8.0562 -3.5174 39 1 1.0034 -6.7307 -0.5658 40 1 2.4430 -6.5688 0.4760 41 1 -0.1268 -5.2788 -2.0738 42 1 -2.6985 -4.6462 -2.0531 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070131337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:14:04 Heat of formation + Delta-G solvation = 85.087063 kcal Electronic energy + Delta-G solvation = -30200.890818 eV Core-core repulsion = 25906.044520 eV Total energy + Delta-G solvation = -4294.846298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.96169 -44.21598 -41.73821 -39.67156 -38.83353 -36.20019 -34.92250 -33.38082 -32.36591 -31.89076 -31.73994 -30.73542 -29.17609 -26.61480 -25.53339 -24.47157 -23.65443 -23.53559 -22.80030 -21.54776 -21.18164 -19.65406 -18.98523 -18.83008 -17.69138 -17.41053 -17.23662 -16.90476 -16.71967 -16.57710 -16.40135 -16.22956 -15.92978 -15.44634 -15.27513 -14.98646 -14.79243 -14.67799 -14.45268 -14.20486 -14.05785 -13.77902 -13.28322 -13.11915 -13.00712 -12.76467 -12.68717 -12.55195 -12.46275 -12.22876 -12.02091 -11.92379 -11.76042 -11.26068 -11.13216 -10.87468 -10.24869 -10.22115 -9.88192 -9.83655 -9.20135 -8.01715 -5.35990 -0.35752 0.11567 0.72628 1.39511 1.45443 1.46866 1.53175 1.62742 1.66165 1.74700 2.48636 2.63586 2.92014 3.04165 3.23424 3.35547 3.45795 3.63432 3.75114 3.78110 3.97750 3.99919 4.04712 4.06788 4.11385 4.21119 4.25842 4.29113 4.40126 4.51142 4.60481 4.75013 4.87184 4.90806 4.96085 4.99941 5.08231 5.17790 5.24166 5.32789 5.44568 5.74399 5.77630 6.15444 6.24345 6.90116 7.24525 7.64639 7.92145 8.13277 9.19183 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013851 B = 0.003184 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.996402 B = 8790.805945 C =10182.612558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.065 4.065 3 Si 0.973 3.027 4 H -0.279 1.279 5 H -0.299 1.299 6 H -0.272 1.272 7 C -0.256 4.256 8 H 0.085 0.915 9 N -0.724 5.724 10 C 0.157 3.843 11 H 0.104 0.896 12 C 0.090 3.910 13 N -0.601 5.601 14 C 0.572 3.428 15 O -0.578 6.578 16 C -0.112 4.112 17 C -0.123 4.123 18 C -0.082 4.082 19 C -0.120 4.120 20 C 0.076 3.924 21 F -0.147 7.147 22 C -0.115 4.115 23 C 0.089 3.911 24 C 0.115 3.885 25 H 0.161 0.839 26 N -0.267 5.267 27 C -0.040 4.040 28 C -0.061 4.061 29 N -0.308 5.308 30 N -0.103 5.103 31 H 0.251 0.749 32 H 0.380 0.620 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.185 0.815 36 H 0.182 0.818 37 H 0.166 0.834 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.154 0.846 41 H 0.202 0.798 42 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -25.742 0.588 26.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.259 4.259 3 Si 0.801 3.199 4 H -0.205 1.205 5 H -0.226 1.226 6 H -0.198 1.198 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.364 5.364 10 C 0.044 3.956 11 H 0.122 0.878 12 C -0.036 4.036 13 N -0.334 5.334 14 C 0.364 3.636 15 O -0.458 6.458 16 C -0.116 4.116 17 C -0.140 4.140 18 C -0.100 4.100 19 C -0.139 4.139 20 C 0.056 3.944 21 F -0.125 7.125 22 C -0.135 4.135 23 C -0.033 4.033 24 C 0.012 3.988 25 H 0.179 0.821 26 N -0.061 5.061 27 C -0.191 4.191 28 C -0.219 4.219 29 N -0.174 5.174 30 N -0.082 5.082 31 H 0.060 0.940 32 H 0.215 0.785 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.201 0.799 36 H 0.200 0.800 37 H 0.184 0.816 38 H 0.145 0.855 39 H 0.137 0.863 40 H 0.171 0.829 41 H 0.219 0.781 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.385 -24.844 1.431 25.461 hybrid contribution 0.693 1.222 -1.921 2.380 sum 6.078 -23.621 -0.490 24.396 Atomic orbital electron populations 1.69861 1.06777 1.26298 1.58042 1.25614 0.96182 1.01329 1.02756 0.85241 0.77187 0.79127 0.78333 1.20491 1.22595 1.19814 1.19568 0.91663 0.84678 1.42770 0.89743 1.42443 1.05950 1.00299 1.87702 1.22003 0.95081 0.84850 0.93617 0.87817 1.23130 1.01186 0.78874 1.00411 1.48227 1.48335 1.07631 1.29193 1.18292 0.77498 0.86621 0.81237 1.90796 1.50088 1.75088 1.29833 1.19465 1.00974 0.91428 0.99696 1.22975 0.98463 0.96844 0.95732 1.21516 0.96602 0.92675 0.99180 1.21792 0.95572 1.02853 0.93665 1.17741 0.93509 0.88888 0.94215 1.91505 1.68806 1.76679 1.75546 1.21162 0.99219 0.92764 1.00363 1.23300 0.96965 0.94007 0.89052 1.23461 0.75118 0.96934 1.03301 0.82134 1.47410 1.10169 1.39842 1.08666 1.23797 0.96360 1.08371 0.90607 1.24068 0.96240 1.04410 0.97157 1.75043 1.19053 1.18018 1.05242 1.78300 0.91439 1.16769 1.21685 0.94009 0.78541 0.91862 0.92967 0.79861 0.80042 0.81645 0.85527 0.86342 0.82876 0.78145 0.77164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.10 13.06 21.65 0.28 -58.82 16 2 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 3 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 4 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.26 -13.42 9.98 84.03 0.84 -12.58 16 8 H 0.08 4.17 7.83 -2.91 -0.02 4.14 16 9 N -0.72 -33.54 5.22 -315.95 -1.65 -35.19 16 10 C 0.16 5.01 3.55 46.47 0.17 5.17 16 11 H 0.10 3.06 8.13 -2.39 -0.02 3.04 16 12 C 0.09 2.81 6.06 86.86 0.53 3.34 16 13 N -0.60 -13.38 3.33 -826.97 -2.75 -16.13 16 14 C 0.57 14.66 7.81 86.79 0.68 15.34 16 15 O -0.58 -20.49 16.67 -3.87 -0.06 -20.55 16 16 C -0.11 -2.08 5.87 -20.09 -0.12 -2.20 16 17 C -0.12 -1.20 8.59 22.53 0.19 -1.01 16 18 C -0.08 -0.50 10.03 22.23 0.22 -0.28 16 19 C -0.12 -1.14 10.02 22.37 0.22 -0.92 16 20 C 0.08 1.26 7.29 22.34 0.16 1.42 16 21 F -0.15 -2.82 17.26 44.97 0.78 -2.05 16 22 C -0.12 -2.34 9.57 22.57 0.22 -2.13 16 23 C 0.09 1.21 3.95 86.73 0.34 1.55 16 24 C 0.11 2.59 3.99 46.27 0.18 2.77 16 25 H 0.16 2.91 8.14 -2.39 -0.02 2.89 16 26 N -0.27 -7.83 2.27 -321.11 -0.73 -8.56 16 27 C -0.04 -1.09 9.24 83.49 0.77 -0.32 16 28 C -0.06 -1.85 12.05 83.73 1.01 -0.84 16 29 N -0.31 -11.85 12.41 -58.26 -0.72 -12.57 16 30 N -0.10 -3.89 12.49 37.02 0.46 -3.43 16 31 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.38 19.62 6.13 -92.71 -0.57 19.05 16 33 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 34 H 0.05 1.87 7.14 -2.39 -0.02 1.85 16 35 H 0.18 0.89 2.77 -7.45 -0.02 0.87 16 36 H 0.18 -0.27 8.06 -2.91 -0.02 -0.29 16 37 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.13 3.01 7.67 -2.91 -0.02 2.99 16 39 H 0.12 1.09 6.10 -2.39 -0.01 1.08 16 40 H 0.15 0.81 6.64 -2.39 -0.02 0.79 16 41 H 0.20 4.36 7.56 -2.91 -0.02 4.34 16 42 H 0.21 4.75 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -81.90 355.80 4.04 -77.87 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.52 Total: 25.75 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 5.88 Total: 6.11 kcal Atomic # 7 Polarization: -129.60 SS G_CDS: -5.11 Total: -134.71 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.06 Total: -20.55 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.05 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -81.90 4.04 -77.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070131337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.957 kcal (2) G-P(sol) polarization free energy of solvation -81.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds