Wall clock time and date at job start Wed Apr 1 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 120.00101 * 2 1 4 4 H 1.48498 * 109.46955 * 354.93342 * 3 2 1 5 5 H 1.48503 * 109.46765 * 114.93189 * 3 2 1 6 6 H 1.48499 * 109.47553 * 234.93278 * 3 2 1 7 7 C 1.38817 * 120.00010 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99789 * 354.52645 * 7 2 1 9 9 N 1.36937 * 120.00130 * 174.52272 * 7 2 1 10 10 C 1.47263 * 135.94026 * 7.25856 * 9 7 2 11 11 C 1.52706 * 87.62560 * 153.83322 * 10 9 7 12 12 C 1.47259 * 135.94465 * 187.62448 * 9 7 2 13 13 C 1.53382 * 115.74953 * 141.62298 * 11 10 9 14 14 C 1.54760 * 101.47030 * 156.53217 * 13 11 10 15 15 H 1.08999 * 110.46520 * 217.14082 * 14 13 11 16 16 N 1.46500 * 110.45955 * 94.56479 * 14 13 11 17 17 C 1.34770 * 120.00132 * 158.64971 * 16 14 13 18 18 O 1.21703 * 120.00317 * 359.97438 * 17 16 14 19 19 C 1.46660 * 120.00119 * 179.97438 * 17 16 14 20 20 C 1.37929 * 126.21427 * 179.68867 * 19 17 16 21 21 C 1.39927 * 107.11203 * 179.90356 * 20 19 17 22 22 F 1.35093 * 126.08321 * 180.13334 * 21 20 19 23 23 C 1.35579 * 107.83904 * 0.36053 * 21 20 19 24 24 N 1.35747 * 108.83100 * 359.77634 * 23 21 20 25 25 H 0.97002 * 125.67708 * 179.97438 * 24 23 21 26 26 C 1.51662 * 104.32008 * 335.85464 * 14 13 11 27 27 N 1.30852 * 141.38850 * 196.11397 * 26 14 13 28 28 C 1.33975 * 109.35500 * 180.26639 * 27 26 14 29 29 C 1.34516 * 108.05068 * 359.93912 * 28 27 26 30 30 N 1.35131 * 110.00067 * 16.24150 * 26 14 13 31 31 H 0.97002 * 119.99938 * 174.79480 * 1 2 3 32 32 H 1.09000 * 113.51054 * 268.49954 * 10 9 7 33 33 H 1.08992 * 113.51184 * 39.07558 * 10 9 7 34 34 H 1.08998 * 113.51223 * 320.92329 * 12 9 7 35 35 H 1.09004 * 113.50788 * 91.50404 * 12 9 7 36 36 H 1.09000 * 111.02497 * 274.58082 * 13 11 10 37 37 H 1.08999 * 111.02257 * 38.48669 * 13 11 10 38 38 H 0.97005 * 119.99770 * 338.64762 * 16 14 13 39 39 H 1.08002 * 126.44547 * 0.02562 * 20 19 17 40 40 H 1.07993 * 125.58257 * 179.80887 * 23 21 20 41 41 H 1.07999 * 125.97753 * 179.91499 * 28 27 26 42 42 H 1.07998 * 126.53710 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2899 2.7436 -0.1236 5 1 3.0088 1.7512 1.2697 6 1 3.1943 1.6443 -1.1459 7 6 2.0103 -1.2022 -0.0005 8 1 1.4739 -2.1354 0.0883 9 7 3.3749 -1.2049 -0.1137 10 6 4.4383 -0.1861 -0.1204 11 6 5.3886 -1.2660 0.3919 12 6 4.4204 -2.2272 -0.2885 13 6 6.8104 -1.2296 -0.1823 14 6 7.6071 -1.9658 0.9215 15 1 8.5896 -1.5115 1.0497 16 7 7.7376 -3.3883 0.5965 17 6 8.7207 -4.1201 1.1570 18 8 9.5004 -3.5992 1.9329 19 6 8.8511 -5.5443 0.8321 20 6 9.8075 -6.4081 1.3237 21 6 9.5599 -7.6628 0.7559 22 9 10.2692 -8.7908 0.9785 23 6 8.4847 -7.5440 -0.0614 24 7 8.0451 -6.2602 -0.0233 25 1 7.2889 -5.9063 -0.5171 26 6 6.7707 -1.7825 2.1734 27 7 6.8461 -1.8768 3.4763 28 6 5.6618 -1.5555 4.0140 29 6 4.8185 -1.2487 3.0119 30 7 5.5210 -1.3903 1.8410 31 1 -0.4850 -0.8366 -0.0762 32 1 4.6880 0.1752 -1.1180 33 1 4.2711 0.6216 0.5920 34 1 4.2381 -3.1375 0.2826 35 1 4.6653 -2.4246 -1.3321 36 1 6.8640 -1.7681 -1.1284 37 1 7.1592 -0.2034 -0.2979 38 1 7.1164 -3.8034 -0.0221 39 1 10.5975 -6.1627 2.0180 40 1 8.0491 -8.3403 -0.6465 41 1 5.4253 -1.5450 5.0677 42 1 3.7859 -0.9480 3.1099 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092380789.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:35 Heat of formation + Delta-G solvation = 121.552261 kcal Electronic energy + Delta-G solvation = -30105.824545 eV Core-core repulsion = 25812.559497 eV Total energy + Delta-G solvation = -4293.265048 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.78917 -42.54634 -41.60139 -39.33917 -38.97740 -35.95944 -33.56276 -32.25985 -31.31434 -30.98353 -29.46243 -28.63462 -27.52945 -26.02273 -24.77358 -23.24743 -21.97975 -21.20462 -21.13852 -20.68189 -20.21945 -19.43157 -19.08513 -17.75932 -16.95331 -16.59733 -16.14120 -16.03499 -15.70757 -15.28152 -15.20306 -14.88395 -14.69578 -14.58116 -14.22704 -14.06227 -13.84202 -13.73936 -13.71230 -13.44307 -13.26897 -13.04729 -12.54949 -12.34500 -12.30379 -12.02455 -11.41228 -11.14711 -10.81056 -10.69467 -10.40926 -9.75627 -9.71783 -9.59263 -9.39564 -9.29251 -9.20115 -9.12774 -8.66267 -8.17336 -7.50993 -6.53991 -3.52250 0.98961 2.06780 2.11618 2.51125 2.72609 2.91700 3.05002 3.18907 3.22327 3.43057 3.47235 3.77360 4.12027 4.21725 4.23691 4.36125 4.41557 4.51443 4.57409 4.63155 4.90094 5.10527 5.17872 5.19577 5.25808 5.41077 5.43768 5.49678 5.61339 5.70148 5.77702 5.82987 5.86917 5.96289 5.98011 6.08261 6.16037 6.46307 6.66669 6.70336 6.76616 7.07180 7.10906 7.33354 7.86399 7.98501 8.36907 8.70464 9.20837 10.00930 10.95298 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.017226 B = 0.002958 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.020920 B = 9464.688121 C =10146.171037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.017 4.017 3 Si 1.065 2.935 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.286 1.286 7 C -0.313 4.313 8 H 0.085 0.915 9 N -0.618 5.618 10 C 0.098 3.902 11 C 0.106 3.894 12 C 0.122 3.878 13 C -0.118 4.118 14 C 0.235 3.765 15 H 0.120 0.880 16 N -0.718 5.718 17 C 0.593 3.407 18 O -0.502 6.502 19 C -0.023 4.023 20 C -0.128 4.128 21 C 0.002 3.998 22 F -0.127 7.127 23 C 0.002 3.998 24 N -0.527 5.527 25 H 0.426 0.574 26 C 0.153 3.847 27 N -0.459 5.459 28 C -0.041 4.041 29 C 0.003 3.997 30 N -0.434 5.434 31 H 0.264 0.736 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.396 0.604 39 H 0.161 0.839 40 H 0.183 0.817 41 H 0.173 0.827 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.009 -9.754 -3.861 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.217 4.217 3 Si 0.897 3.103 4 H -0.217 1.217 5 H -0.220 1.220 6 H -0.213 1.213 7 C -0.438 4.438 8 H 0.102 0.898 9 N -0.346 5.346 10 C -0.028 4.028 11 C 0.019 3.981 12 C -0.005 4.005 13 C -0.158 4.158 14 C 0.128 3.872 15 H 0.138 0.862 16 N -0.370 5.370 17 C 0.379 3.621 18 O -0.375 6.375 19 C -0.137 4.137 20 C -0.155 4.155 21 C -0.024 4.024 22 F -0.106 7.106 23 C -0.135 4.135 24 N -0.125 5.125 25 H 0.265 0.735 26 C -0.110 4.110 27 N -0.178 5.178 28 C -0.189 4.189 29 C -0.131 4.131 30 N -0.116 5.116 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.230 0.770 39 H 0.179 0.821 40 H 0.201 0.799 41 H 0.190 0.810 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 17.466 -7.815 -2.914 19.355 hybrid contribution -1.505 -1.827 -0.924 2.541 sum 15.961 -9.642 -3.838 19.038 Atomic orbital electron populations 1.70911 1.05410 1.29462 1.50787 1.25715 0.96422 1.00908 0.98689 0.83791 0.74121 0.76324 0.76111 1.21717 1.22007 1.21289 1.20110 0.77469 0.95967 1.50298 0.89753 1.46018 1.01580 1.01202 1.85775 1.23029 0.86724 0.93702 0.99391 1.22318 0.94998 1.02632 0.78113 1.22613 0.86833 0.93804 0.97258 1.22793 0.91909 1.03148 0.97952 1.19703 0.99156 0.81034 0.87319 0.86198 1.45833 1.32691 1.10304 1.48216 1.16890 0.81063 0.83685 0.80450 1.90921 1.42424 1.70781 1.33342 1.20286 0.98082 0.92905 1.02413 1.21336 1.00749 0.90443 1.02971 1.16476 0.96719 0.83889 1.05276 1.91456 1.77044 1.47988 1.94083 1.21785 0.99014 0.87642 1.05020 1.41744 1.26325 1.08463 1.35924 0.73531 1.24391 0.86963 1.06623 0.93023 1.69819 1.24408 1.19306 1.04240 1.22259 0.89292 1.08253 0.99130 1.22581 0.99767 1.07965 0.82797 1.45694 1.11771 1.48727 1.05393 0.92623 0.91443 0.91805 0.93069 0.92462 0.87270 0.87215 0.77009 0.82123 0.79950 0.81022 0.80977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 13.70 55.49 0.76 -26.87 16 2 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 3 Si 1.06 24.80 25.17 -169.99 -4.28 20.52 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -6.53 6.49 56.52 0.37 -6.16 16 6 H -0.29 -6.02 6.18 56.52 0.35 -5.67 16 7 C -0.31 -8.24 11.08 -15.06 -0.17 -8.41 16 8 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 9 N -0.62 -13.27 3.70 -184.72 -0.68 -13.95 16 10 C 0.10 1.76 5.22 -7.78 -0.04 1.72 16 11 C 0.11 1.55 1.64 -133.41 -0.22 1.33 16 12 C 0.12 1.95 8.19 -7.91 -0.06 1.88 16 13 C -0.12 -1.16 6.15 -25.61 -0.16 -1.31 16 14 C 0.23 2.77 3.23 -67.68 -0.22 2.55 16 15 H 0.12 1.42 7.67 -51.93 -0.40 1.02 16 16 N -0.72 -7.20 5.12 -54.88 -0.28 -7.48 16 17 C 0.59 7.22 7.78 -12.86 -0.10 7.12 16 18 O -0.50 -8.07 16.59 5.19 0.09 -7.98 16 19 C -0.02 -0.23 7.05 -81.98 -0.58 -0.81 16 20 C -0.13 -1.39 10.66 -39.06 -0.42 -1.80 16 21 C 0.00 0.02 7.98 -39.90 -0.32 -0.30 16 22 F -0.13 -1.37 17.32 2.25 0.04 -1.33 16 23 C 0.00 0.01 11.90 -16.77 -0.20 -0.18 16 24 N -0.53 -3.55 6.00 -9.31 -0.06 -3.60 16 25 H 0.43 1.57 8.19 -40.82 -0.33 1.23 16 26 C 0.15 2.47 8.22 -154.57 -1.27 1.20 16 27 N -0.46 -8.43 11.25 -10.49 -0.12 -8.55 16 28 C -0.04 -0.70 11.86 -17.93 -0.21 -0.91 16 29 C 0.00 0.05 12.03 -16.43 -0.20 -0.15 16 30 N -0.43 -7.24 3.41 -100.95 -0.34 -7.58 16 31 H 0.26 7.79 8.73 -40.82 -0.36 7.43 16 32 H 0.07 1.11 7.60 -51.93 -0.39 0.71 16 33 H 0.06 1.28 4.80 -51.93 -0.25 1.03 16 34 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.76 7.98 -51.93 -0.41 0.34 16 36 H 0.11 0.71 7.75 -51.93 -0.40 0.31 16 37 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.40 2.83 7.69 -40.82 -0.31 2.51 16 39 H 0.16 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.18 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.17 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.17 3.13 8.06 -52.49 -0.42 2.71 16 LS Contribution 357.52 15.07 5.39 5.39 Total: -1.00 -36.37 357.52 -8.45 -44.82 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -4.71 Total: 5.27 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -4.26 Total: 1.35 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -0.72 Total: -68.04 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.09 Total: -7.98 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -4.28 Total: 20.52 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.37 -8.45 -44.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092380789.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.372 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds