Wall clock time and date at job start Wed Apr 1 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00356 * 2 1 4 4 H 1.48506 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46707 * 299.99443 * 3 2 1 6 6 H 1.48496 * 109.47093 * 59.99697 * 3 2 1 7 7 C 1.38820 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99938 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49234 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11706 * 155.35767 * 10 9 7 12 12 N 1.46499 * 113.73958 * 137.94923 * 11 10 9 13 13 C 1.35316 * 125.87306 * 277.21785 * 12 11 10 14 14 C 1.35343 * 106.17658 * 180.18593 * 13 12 11 15 15 C 1.50701 * 126.75123 * 179.84945 * 14 13 12 16 16 N 1.46507 * 109.46863 * 94.71868 * 15 14 13 17 17 C 1.34772 * 119.99641 * 180.02562 * 16 15 14 18 18 O 1.21566 * 120.00472 * 359.97438 * 17 16 15 19 19 C 1.47704 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.39654 * 120.16841 * 0.02562 * 19 17 16 21 21 C 1.37850 * 119.88070 * 179.97438 * 20 19 17 22 22 C 1.38457 * 120.21841 * 359.97342 * 21 20 19 23 23 C 1.38205 * 120.33997 * 0.02562 * 22 21 20 24 24 C 1.38323 * 120.11600 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.11080 * 179.97438 * 24 23 22 26 26 N 1.33770 * 106.50041 * 359.59602 * 14 13 12 27 27 N 1.28641 * 108.88163 * 0.26019 * 26 14 13 28 28 C 1.47813 * 134.45766 * 359.86807 * 9 7 2 29 29 H 0.97004 * 119.99543 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.77131 * 41.05722 * 10 9 7 31 31 H 1.09003 * 113.86820 * 269.66722 * 10 9 7 32 32 H 1.08994 * 113.73963 * 269.15282 * 11 10 9 33 33 H 1.07998 * 126.90752 * 0.04395 * 13 12 11 34 34 H 1.08997 * 109.47379 * 334.72061 * 15 14 13 35 35 H 1.09001 * 109.47165 * 214.71349 * 15 14 13 36 36 H 0.96995 * 119.99985 * 359.97438 * 16 15 14 37 37 H 1.08002 * 120.06168 * 359.95157 * 20 19 17 38 38 H 1.08003 * 119.89231 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.83351 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.94706 * 179.74501 * 23 22 21 41 41 H 1.09003 * 113.76780 * 90.37633 * 28 9 7 42 42 H 1.09004 * 113.83808 * 318.91853 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.7200 -3.8102 0.0029 11 6 0.3469 -4.0824 0.6435 12 7 -0.3335 -5.2612 0.1017 13 6 -1.0714 -5.2996 -1.0320 14 6 -1.5129 -6.5734 -1.1515 15 6 -2.3809 -7.1274 -2.2519 16 7 -1.5346 -7.7310 -3.2843 17 6 -2.0968 -8.2932 -4.3725 18 8 -3.3061 -8.3000 -4.4973 19 6 -1.2436 -8.9013 -5.4137 20 6 0.1459 -8.8960 -5.2737 21 6 0.9365 -9.4657 -6.2488 22 6 0.3575 -10.0434 -7.3659 23 6 -1.0166 -10.0537 -7.5137 24 6 -1.8231 -9.4851 -6.5443 25 9 -3.1663 -9.4948 -6.6891 26 7 -1.0226 -7.2454 -0.1039 27 7 -0.3283 -6.4395 0.6196 28 6 -0.1058 -2.7571 0.0048 29 1 -0.4850 0.8401 -0.0004 30 1 2.5623 -4.0319 0.6583 31 1 1.8323 -4.2376 -0.9935 32 1 0.3594 -4.0624 1.7332 33 1 -1.2700 -4.4784 -1.7047 34 1 -2.9701 -6.3220 -2.6902 35 1 -3.0490 -7.8845 -1.8413 36 1 -0.5698 -7.7253 -3.1850 37 1 0.6003 -8.4462 -4.4033 38 1 2.0111 -9.4613 -6.1409 39 1 0.9828 -10.4883 -8.1258 40 1 -1.4613 -10.5024 -8.3896 41 1 -0.5320 -2.8726 -0.9918 42 1 -0.7185 -2.1396 0.6618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094269749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:14 Heat of formation + Delta-G solvation = 110.448906 kcal Electronic energy + Delta-G solvation = -28435.210959 eV Core-core repulsion = 24141.464433 eV Total energy + Delta-G solvation = -4293.746526 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.09470 -43.12624 -40.24755 -38.59730 -38.38001 -35.34582 -33.49224 -32.34728 -31.88139 -30.94754 -30.87400 -28.01712 -26.97100 -25.33042 -24.46937 -24.16704 -22.94593 -21.98071 -21.18200 -20.86127 -19.67686 -18.67549 -17.55384 -17.31496 -16.91016 -16.68807 -16.13251 -16.02291 -15.63065 -15.37529 -15.20158 -15.14784 -14.81767 -14.63822 -14.11903 -13.88123 -13.45020 -13.41948 -13.19215 -12.96185 -12.60525 -12.45753 -12.25655 -12.15424 -11.89492 -11.75692 -11.43326 -11.22003 -11.01790 -10.98958 -10.57267 -10.25286 -10.21766 -9.93350 -9.62877 -9.60858 -9.28814 -9.16813 -9.11306 -9.09671 -7.30042 -6.08554 -3.44056 0.31463 0.73152 1.75728 2.34691 2.53752 2.59087 3.18435 3.23440 3.29308 3.31737 3.34702 3.81301 4.17961 4.21622 4.26634 4.36044 4.47638 4.66814 4.69871 4.77756 4.78326 4.88107 5.10113 5.16465 5.22945 5.36313 5.45461 5.52677 5.55486 5.60718 5.69382 5.71128 5.86974 6.00130 6.06086 6.10450 6.15211 6.24973 6.34927 6.49087 6.75656 6.98044 7.12557 7.25011 7.63939 7.96679 8.68397 8.71687 9.38036 10.15052 11.08730 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002135 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.737283 B =13114.021268 C =13875.467290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.001 4.001 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.599 5.599 10 C 0.120 3.880 11 C 0.077 3.923 12 N -0.265 5.265 13 C -0.014 4.014 14 C -0.064 4.064 15 C 0.216 3.784 16 N -0.716 5.716 17 C 0.558 3.442 18 O -0.525 6.525 19 C -0.171 4.171 20 C -0.056 4.056 21 C -0.139 4.139 22 C -0.065 4.065 23 C -0.167 4.167 24 C 0.159 3.841 25 F -0.115 7.115 26 N -0.266 5.266 27 N -0.088 5.088 28 C 0.163 3.837 29 H 0.259 0.741 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.132 0.868 33 H 0.191 0.809 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.402 0.598 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.042 0.958 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -17.797 -12.000 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.199 4.199 3 Si 0.749 3.251 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.213 1.213 7 C -0.359 4.359 8 H 0.106 0.894 9 N -0.325 5.325 10 C -0.007 4.007 11 C -0.025 4.025 12 N -0.057 5.057 13 C -0.167 4.167 14 C -0.203 4.203 15 C 0.091 3.909 16 N -0.369 5.369 17 C 0.345 3.655 18 O -0.402 6.402 19 C -0.176 4.176 20 C -0.075 4.075 21 C -0.157 4.157 22 C -0.083 4.083 23 C -0.185 4.185 24 C 0.139 3.861 25 F -0.093 7.093 26 N -0.133 5.133 27 N -0.067 5.067 28 C 0.037 3.963 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.150 0.850 33 H 0.208 0.792 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.237 0.763 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.059 0.941 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.240 -18.260 -10.844 21.239 hybrid contribution 0.427 1.768 -0.840 2.003 sum 0.667 -16.493 -11.684 20.223 Atomic orbital electron populations 1.69769 1.05179 1.26091 1.55388 1.24862 0.95796 0.97964 1.01257 0.85944 0.78781 0.82880 0.77512 1.20203 1.21412 1.21348 1.19044 0.90446 0.80937 1.45496 0.89428 1.45678 1.01602 0.99358 1.85882 1.22930 0.93416 0.86648 0.97719 1.25300 0.95452 0.80564 1.01186 1.47927 1.31956 1.09877 1.15943 1.23519 0.99422 1.00455 0.93339 1.21697 1.07105 0.91905 0.99627 1.19312 0.90078 0.98054 0.83417 1.45915 1.10883 1.59231 1.20894 1.17948 0.87605 0.78477 0.81478 1.90853 1.13791 1.57791 1.77762 1.20080 0.94647 1.06179 0.96650 1.21282 0.91321 0.95997 0.98884 1.21196 1.00785 0.99460 0.94246 1.21241 0.93840 0.95938 0.97319 1.21197 0.94208 1.03288 0.99845 1.17727 0.77872 0.96666 0.93863 1.91604 1.28667 1.93696 1.95286 1.75031 1.09276 1.25447 1.03555 1.78282 1.18513 0.88664 1.21245 1.22748 0.89413 0.86227 0.97950 0.93111 0.91958 0.93991 0.85005 0.79163 0.89325 0.89466 0.76279 0.84576 0.84522 0.84456 0.83999 0.94076 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.83 11.39 55.49 0.63 -24.20 16 2 C 0.00 -0.03 5.50 -17.43 -0.10 -0.13 16 3 Si 0.92 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.23 -5.89 10.70 -15.06 -0.16 -6.05 16 8 H 0.09 2.15 7.83 -52.49 -0.41 1.73 16 9 N -0.60 -13.53 3.70 -177.86 -0.66 -14.19 16 10 C 0.12 2.15 8.74 -2.96 -0.03 2.13 16 11 C 0.08 1.29 5.13 -70.14 -0.36 0.93 16 12 N -0.26 -4.18 3.54 -56.30 -0.20 -4.37 16 13 C -0.01 -0.19 10.72 -17.05 -0.18 -0.37 16 14 C -0.06 -0.88 6.61 -82.78 -0.55 -1.43 16 15 C 0.22 2.57 6.23 -5.19 -0.03 2.54 16 16 N -0.72 -7.93 5.50 -62.47 -0.34 -8.27 16 17 C 0.56 7.13 7.77 -12.40 -0.10 7.04 16 18 O -0.53 -8.57 15.34 5.31 0.08 -8.48 16 19 C -0.17 -1.81 5.88 -104.91 -0.62 -2.43 16 20 C -0.06 -0.43 9.54 -39.19 -0.37 -0.80 16 21 C -0.14 -0.83 10.03 -39.64 -0.40 -1.23 16 22 C -0.07 -0.37 10.03 -39.51 -0.40 -0.76 16 23 C -0.17 -1.23 10.01 -39.56 -0.40 -1.63 16 24 C 0.16 1.70 7.29 -38.96 -0.28 1.41 16 25 F -0.11 -1.51 15.55 2.25 0.04 -1.47 16 26 N -0.27 -4.31 12.41 33.29 0.41 -3.89 16 27 N -0.09 -1.49 13.17 60.35 0.79 -0.69 16 28 C 0.16 3.28 6.90 -2.85 -0.02 3.26 16 29 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.13 2.15 8.14 -51.93 -0.42 1.72 16 33 H 0.19 2.36 6.74 -52.49 -0.35 2.01 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.40 3.75 6.50 -40.82 -0.27 3.49 16 37 H 0.14 0.81 6.41 -52.49 -0.34 0.47 16 38 H 0.14 0.50 8.06 -52.48 -0.42 0.08 16 39 H 0.14 0.39 8.06 -52.49 -0.42 -0.04 16 40 H 0.14 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 42 H 0.09 2.06 7.17 -51.93 -0.37 1.69 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -31.91 366.70 -7.31 -39.22 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -4.58 Total: 2.91 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -3.99 Total: 2.47 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.64 Total: -55.62 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.91 -7.31 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094269749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.673 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds