Wall clock time and date at job start Wed Apr 1 2020 03:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86800 * 120.00356 * 2 1 4 4 H 1.48506 * 109.47135 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46707 * 299.99443 * 3 2 1 6 6 H 1.48496 * 109.47093 * 59.99697 * 3 2 1 7 7 C 1.38820 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99938 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99888 * 359.97438 * 7 2 1 10 10 C 1.47582 * 134.49234 * 180.02562 * 9 7 2 11 11 C 1.53951 * 86.11706 * 155.35767 * 10 9 7 12 12 N 1.46499 * 113.73958 * 137.94923 * 11 10 9 13 13 C 1.35316 * 125.87306 * 277.21785 * 12 11 10 14 14 C 1.35343 * 106.17658 * 180.18593 * 13 12 11 15 15 C 1.50701 * 126.75123 * 179.84945 * 14 13 12 16 16 N 1.46507 * 109.46863 * 94.71868 * 15 14 13 17 17 C 1.34772 * 119.99641 * 180.02562 * 16 15 14 18 18 O 1.21566 * 120.00472 * 359.97438 * 17 16 15 19 19 C 1.47704 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.39654 * 120.16841 * 0.02562 * 19 17 16 21 21 C 1.37850 * 119.88070 * 179.97438 * 20 19 17 22 22 C 1.38457 * 120.21841 * 359.97342 * 21 20 19 23 23 C 1.38205 * 120.33997 * 0.02562 * 22 21 20 24 24 C 1.38323 * 120.11600 * 0.02562 * 23 22 21 25 25 F 1.35095 * 120.11080 * 179.97438 * 24 23 22 26 26 N 1.33770 * 106.50041 * 359.59602 * 14 13 12 27 27 N 1.28641 * 108.88163 * 0.26019 * 26 14 13 28 28 C 1.47813 * 134.45766 * 359.86807 * 9 7 2 29 29 H 0.97004 * 119.99543 * 0.02562 * 1 2 3 30 30 H 1.09002 * 113.77131 * 41.05722 * 10 9 7 31 31 H 1.09003 * 113.86820 * 269.66722 * 10 9 7 32 32 H 1.08994 * 113.73963 * 269.15282 * 11 10 9 33 33 H 1.07998 * 126.90752 * 0.04395 * 13 12 11 34 34 H 1.08997 * 109.47379 * 334.72061 * 15 14 13 35 35 H 1.09001 * 109.47165 * 214.71349 * 15 14 13 36 36 H 0.96995 * 119.99985 * 359.97438 * 16 15 14 37 37 H 1.08002 * 120.06168 * 359.95157 * 20 19 17 38 38 H 1.08003 * 119.89231 * 179.97438 * 21 20 19 39 39 H 1.08000 * 119.83351 * 180.02562 * 22 21 20 40 40 H 1.07995 * 119.94706 * 179.74501 * 23 22 21 41 41 H 1.09003 * 113.76780 * 90.37633 * 28 9 7 42 42 H 1.09004 * 113.83808 * 318.91853 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.7200 -3.8102 0.0029 11 6 0.3469 -4.0824 0.6435 12 7 -0.3335 -5.2612 0.1017 13 6 -1.0714 -5.2996 -1.0320 14 6 -1.5129 -6.5734 -1.1515 15 6 -2.3809 -7.1274 -2.2519 16 7 -1.5346 -7.7310 -3.2843 17 6 -2.0968 -8.2932 -4.3725 18 8 -3.3061 -8.3000 -4.4973 19 6 -1.2436 -8.9013 -5.4137 20 6 0.1459 -8.8960 -5.2737 21 6 0.9365 -9.4657 -6.2488 22 6 0.3575 -10.0434 -7.3659 23 6 -1.0166 -10.0537 -7.5137 24 6 -1.8231 -9.4851 -6.5443 25 9 -3.1663 -9.4948 -6.6891 26 7 -1.0226 -7.2454 -0.1039 27 7 -0.3283 -6.4395 0.6196 28 6 -0.1058 -2.7571 0.0048 29 1 -0.4850 0.8401 -0.0004 30 1 2.5623 -4.0319 0.6583 31 1 1.8323 -4.2376 -0.9935 32 1 0.3594 -4.0624 1.7332 33 1 -1.2700 -4.4784 -1.7047 34 1 -2.9701 -6.3220 -2.6902 35 1 -3.0490 -7.8845 -1.8413 36 1 -0.5698 -7.7253 -3.1850 37 1 0.6003 -8.4462 -4.4033 38 1 2.0111 -9.4613 -6.1409 39 1 0.9828 -10.4883 -8.1258 40 1 -1.4613 -10.5024 -8.3896 41 1 -0.5320 -2.8726 -0.9918 42 1 -0.7185 -2.1396 0.6618 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094269749.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:11:13 Heat of formation + Delta-G solvation = 89.574120 kcal Electronic energy + Delta-G solvation = -28436.116158 eV Core-core repulsion = 24141.464433 eV Total energy + Delta-G solvation = -4294.651725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.134 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.92321 -44.37348 -41.10945 -39.94789 -39.26662 -36.42064 -34.99006 -33.72789 -33.02503 -31.87803 -31.47374 -29.71275 -28.03223 -26.83493 -26.02612 -24.90480 -23.60107 -23.41125 -22.35881 -21.74550 -21.14077 -19.52390 -18.96757 -18.34041 -18.05286 -17.69588 -17.25394 -16.97590 -16.88481 -16.49316 -16.24531 -16.15212 -15.88577 -15.67152 -15.44144 -14.90614 -14.69523 -14.35161 -14.30051 -14.13874 -13.73539 -13.58875 -13.40261 -13.23494 -13.01231 -12.96916 -12.80775 -12.65095 -12.43639 -12.31914 -12.06839 -11.80146 -11.72664 -11.24960 -11.02796 -10.88957 -10.38217 -10.33175 -10.08678 -9.77253 -9.10695 -8.01052 -5.36131 -0.34027 0.16220 0.54792 1.18731 1.27936 1.48042 1.49876 1.58449 1.73696 2.22291 2.42827 2.67696 3.07203 3.10150 3.17846 3.30601 3.32597 3.54236 3.68364 3.74704 3.90857 3.98755 3.99546 4.15148 4.26401 4.29195 4.44869 4.53765 4.58925 4.68415 4.74230 4.89728 4.97464 4.99497 5.01993 5.03828 5.09865 5.19728 5.21963 5.35709 5.37287 5.65243 5.77476 5.80565 6.35378 6.80585 7.03563 7.44123 7.49135 8.33820 9.15939 Molecular weight = 345.13amu Principal moments of inertia in cm(-1) A = 0.013697 B = 0.002135 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.737283 B =13114.021268 C =13875.467290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.057 4.057 3 Si 0.979 3.021 4 H -0.264 1.264 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.235 4.235 8 H 0.092 0.908 9 N -0.628 5.628 10 C 0.126 3.874 11 C 0.104 3.896 12 N -0.268 5.268 13 C -0.011 4.011 14 C -0.050 4.050 15 C 0.219 3.781 16 N -0.706 5.706 17 C 0.556 3.444 18 O -0.571 6.571 19 C -0.195 4.195 20 C -0.057 4.057 21 C -0.132 4.132 22 C -0.053 4.053 23 C -0.165 4.165 24 C 0.124 3.876 25 F -0.140 7.140 26 N -0.280 5.280 27 N -0.105 5.105 28 C 0.164 3.836 29 H 0.253 0.747 30 H 0.077 0.923 31 H 0.056 0.944 32 H 0.138 0.862 33 H 0.208 0.792 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.411 0.589 37 H 0.152 0.848 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.160 0.840 41 H 0.047 0.953 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.123 -18.939 -13.198 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.251 4.251 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.363 4.363 8 H 0.110 0.890 9 N -0.355 5.355 10 C 0.000 4.000 11 C 0.002 3.998 12 N -0.060 5.060 13 C -0.164 4.164 14 C -0.189 4.189 15 C 0.094 3.906 16 N -0.359 5.359 17 C 0.344 3.656 18 O -0.451 6.451 19 C -0.199 4.199 20 C -0.076 4.076 21 C -0.150 4.150 22 C -0.070 4.070 23 C -0.184 4.184 24 C 0.103 3.897 25 F -0.119 7.119 26 N -0.146 5.146 27 N -0.084 5.084 28 C 0.038 3.962 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.156 0.844 33 H 0.224 0.776 34 H 0.116 0.884 35 H 0.099 0.901 36 H 0.249 0.751 37 H 0.169 0.831 38 H 0.186 0.814 39 H 0.193 0.807 40 H 0.178 0.822 41 H 0.065 0.935 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.797 -19.447 -12.030 23.037 hybrid contribution -0.297 1.986 -0.529 2.077 sum 2.499 -17.460 -12.559 21.653 Atomic orbital electron populations 1.69921 1.06356 1.26127 1.57272 1.25602 0.96562 1.00854 1.02098 0.85010 0.78359 0.79255 0.76676 1.18796 1.22005 1.21952 1.19373 0.90987 0.82194 1.43757 0.89026 1.45916 1.02884 1.00506 1.86226 1.23028 0.94347 0.83966 0.98645 1.24706 0.94404 0.79596 1.01072 1.47724 1.32423 1.09441 1.16422 1.23825 0.98714 1.01025 0.92857 1.21821 1.06374 0.91575 0.99171 1.19283 0.89865 0.98216 0.83205 1.45786 1.11277 1.58580 1.20215 1.18371 0.87353 0.77915 0.81926 1.90819 1.15764 1.59728 1.78793 1.20042 0.95678 1.07788 0.96390 1.21516 0.90060 0.95997 1.00019 1.21636 1.02211 0.97758 0.93362 1.21727 0.93221 0.94342 0.97756 1.21493 0.94920 1.02481 0.99491 1.18215 0.77272 0.98770 0.95404 1.91531 1.30616 1.94166 1.95538 1.75022 1.09575 1.25762 1.04253 1.78290 1.19407 0.88888 1.21817 1.22619 0.88257 0.87450 0.97880 0.93834 0.90497 0.92669 0.84409 0.77558 0.88449 0.90057 0.75120 0.83092 0.81374 0.80737 0.82241 0.93506 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.05 11.39 21.65 0.25 -51.80 16 2 C -0.06 -2.96 5.50 84.86 0.47 -2.49 16 3 Si 0.98 42.06 29.55 68.60 2.03 44.08 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 6 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.24 -11.78 10.70 84.04 0.90 -10.88 16 8 H 0.09 4.37 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -27.87 3.70 -716.63 -2.65 -30.53 16 10 C 0.13 4.27 8.74 86.49 0.76 5.02 16 11 C 0.10 3.36 5.13 46.74 0.24 3.60 16 12 N -0.27 -8.03 3.54 -332.05 -1.18 -9.21 16 13 C -0.01 -0.29 10.72 83.49 0.89 0.61 16 14 C -0.05 -1.31 6.61 41.60 0.28 -1.04 16 15 C 0.22 5.10 6.23 85.63 0.53 5.64 16 16 N -0.71 -15.20 5.50 -469.84 -2.58 -17.78 16 17 C 0.56 14.46 7.77 86.75 0.67 15.13 16 18 O -0.57 -19.51 15.34 -3.92 -0.06 -19.57 16 19 C -0.19 -4.06 5.88 -20.05 -0.12 -4.18 16 20 C -0.06 -0.75 9.54 22.52 0.21 -0.54 16 21 C -0.13 -1.08 10.03 22.23 0.22 -0.86 16 22 C -0.05 -0.40 10.03 22.31 0.22 -0.17 16 23 C -0.17 -2.15 10.01 22.28 0.22 -1.93 16 24 C 0.12 2.66 7.29 22.67 0.17 2.82 16 25 F -0.14 -3.92 15.55 44.97 0.70 -3.22 16 26 N -0.28 -8.69 12.41 -48.60 -0.60 -9.29 16 27 N -0.11 -3.41 13.17 37.02 0.49 -2.92 16 28 C 0.16 6.55 6.90 86.43 0.60 7.14 16 29 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.14 4.31 8.14 -2.39 -0.02 4.30 16 33 H 0.21 4.75 6.74 -2.91 -0.02 4.73 16 34 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.41 7.10 6.50 -92.71 -0.60 6.50 16 37 H 0.15 1.41 6.41 -2.91 -0.02 1.39 16 38 H 0.17 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 40 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 41 H 0.05 1.80 6.31 -2.39 -0.02 1.79 16 42 H 0.06 2.89 7.17 -2.38 -0.02 2.87 16 Total: -1.00 -70.73 366.70 3.14 -67.59 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 0.49 Total: 14.78 kcal Atomic # 6 Polarization: 11.60 SS G_CDS: 6.27 Total: 17.87 kcal Atomic # 7 Polarization: -115.24 SS G_CDS: -6.28 Total: -121.53 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.06 Total: -19.57 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.70 Total: -3.22 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.08 kcal Total: -70.73 3.14 -67.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094269749.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.160 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds