Wall clock time and date at job start Wed Apr 1 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 119.99956 * 2 1 4 4 H 1.48503 * 109.46914 * 269.99409 * 3 2 1 5 5 H 1.48499 * 109.47250 * 29.99617 * 3 2 1 6 6 H 1.48500 * 109.47079 * 149.99807 * 3 2 1 7 7 C 1.38814 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00265 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00064 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00208 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.35353 * 126.74884 * 95.24274 * 11 10 9 13 13 N 1.35316 * 106.17181 * 180.12613 * 12 11 10 14 14 C 1.46499 * 125.86841 * 179.90219 * 13 12 11 15 15 C 1.53504 * 114.20382 * 84.71602 * 14 13 12 16 16 N 1.47066 * 88.04678 * 220.37387 * 15 14 13 17 17 C 1.34779 * 136.05579 * 207.05024 * 16 15 14 18 18 O 1.21279 * 120.00073 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00040 * 180.02562 * 17 16 15 20 20 O 1.42897 * 109.47187 * 180.02562 * 19 17 16 21 21 C 1.42904 * 113.99960 * 180.02562 * 20 19 17 22 22 C 1.52996 * 109.47160 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.47311 * 300.00237 * 22 21 20 24 24 F 1.39903 * 109.46986 * 59.99843 * 22 21 20 25 25 C 1.47064 * 87.88659 * 27.09306 * 16 15 14 26 26 N 1.28712 * 108.26333 * 359.64225 * 13 12 11 27 27 N 1.28630 * 110.18000 * 0.22465 * 26 13 12 28 28 H 0.96995 * 120.00211 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99966 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47322 * 59.99285 * 10 9 7 31 31 H 1.08998 * 109.46565 * 299.99388 * 10 9 7 32 32 H 1.07997 * 126.91327 * 0.02562 * 12 11 10 33 33 H 1.09002 * 113.41645 * 217.91422 * 14 13 12 34 34 H 1.09002 * 113.46865 * 105.56483 * 15 14 13 35 35 H 1.08999 * 113.46581 * 335.18259 * 15 14 13 36 36 H 1.08999 * 109.47263 * 300.00593 * 19 17 16 37 37 H 1.09004 * 109.46716 * 60.00256 * 19 17 16 38 38 H 1.09002 * 109.46779 * 300.00332 * 21 20 19 39 39 H 1.09002 * 109.47034 * 60.00133 * 21 20 19 40 40 H 1.08998 * 109.47193 * 180.02562 * 22 21 20 41 41 H 1.08999 * 113.47096 * 87.65665 * 25 16 15 42 42 H 1.09005 * 113.46966 * 218.04058 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.5937 -2.1956 0.0011 12 6 6.4080 -2.1451 1.0811 13 7 7.6451 -1.8681 0.6077 14 6 8.8583 -1.7147 1.4144 15 6 9.5682 -3.0360 1.7409 16 7 9.8110 -2.5130 3.0938 17 6 10.7305 -2.7091 4.0595 18 8 11.6381 -3.4938 3.8823 19 6 10.6309 -1.9534 5.3595 20 8 11.7125 -2.3305 6.2138 21 6 11.7113 -1.6680 7.4800 22 6 12.9069 -2.1456 8.3066 23 9 12.8158 -3.5277 8.5032 24 9 14.0927 -1.8486 7.6260 25 6 8.6083 -1.6827 2.9297 26 7 7.5736 -1.7680 -0.6735 27 7 6.3637 -1.9581 -1.0667 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3622 0.0007 30 1 3.8490 -3.0424 -0.8890 31 1 3.8484 -3.0426 0.8909 32 1 6.1267 -2.2941 2.1131 33 1 9.5215 -0.9283 1.0541 34 1 10.4808 -3.1922 1.1656 35 1 8.9052 -3.9010 1.7224 36 1 10.6806 -0.8826 5.1620 37 1 9.6842 -2.1896 5.8454 38 1 11.7827 -0.5912 7.3267 39 1 10.7872 -1.8991 8.0100 40 1 12.9057 -1.6406 9.2725 41 1 7.6889 -2.1867 3.2277 42 1 8.7043 -0.6885 3.3662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105290492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:55 Heat of formation + Delta-G solvation = -4.806013 kcal Electronic energy + Delta-G solvation = -28782.060729 eV Core-core repulsion = 24052.547150 eV Total energy + Delta-G solvation = -4729.513579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.39450 -47.43203 -43.35544 -41.07574 -39.19746 -37.84853 -35.28240 -33.76509 -32.00775 -31.44905 -30.43704 -30.15606 -27.80441 -26.90319 -26.13550 -24.16725 -23.56580 -22.50973 -21.40930 -20.91237 -19.82679 -18.53210 -18.41239 -18.05749 -17.95799 -17.50572 -17.08672 -16.81145 -16.70667 -16.22526 -15.93762 -15.36293 -14.91547 -14.63035 -14.43042 -14.27755 -14.21747 -13.98570 -13.78226 -13.48696 -13.44457 -13.37943 -13.03811 -12.84266 -12.74641 -12.63522 -12.17967 -11.95224 -11.58503 -11.57157 -11.19908 -10.92806 -10.72852 -10.64091 -10.43816 -10.22325 -10.08863 -9.63369 -9.55535 -9.13958 -8.94505 -7.28297 -5.79705 -3.15887 1.45603 1.52328 1.86614 2.26592 2.64390 2.76672 3.19084 3.23526 3.34474 3.40283 3.43947 3.54057 3.63319 3.82528 3.93358 4.10101 4.28400 4.36693 4.42268 4.44722 4.47821 4.53523 4.57083 4.60560 4.74722 4.82168 4.91059 4.98547 5.10756 5.25463 5.47796 5.59233 5.67050 6.05428 6.14961 6.47103 6.47741 6.60279 6.83540 7.44603 7.94378 8.38722 8.57475 9.16510 9.88903 10.08579 11.38297 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.001804 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.362934 B =15514.885067 C =16483.497467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.245 4.245 8 H 0.094 0.906 9 N -0.749 5.749 10 C 0.236 3.764 11 C -0.006 4.006 12 C -0.046 4.046 13 N -0.293 5.293 14 C 0.111 3.889 15 C 0.104 3.896 16 N -0.647 5.647 17 C 0.552 3.448 18 O -0.502 6.502 19 C 0.052 3.948 20 O -0.353 6.353 21 C 0.007 3.993 22 C 0.273 3.727 23 F -0.198 7.198 24 F -0.198 7.198 25 C 0.094 3.906 26 N -0.087 5.087 27 N -0.250 5.250 28 H 0.260 0.740 29 H 0.362 0.638 30 H 0.049 0.951 31 H 0.047 0.953 32 H 0.191 0.809 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.128 0.872 41 H 0.106 0.894 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.851 -1.747 18.807 32.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.111 0.889 9 N -0.396 5.396 10 C 0.108 3.892 11 C -0.143 4.143 12 C -0.196 4.196 13 N -0.087 5.087 14 C 0.007 3.993 15 C -0.019 4.019 16 N -0.386 5.386 17 C 0.341 3.659 18 O -0.374 6.374 19 C -0.028 4.028 20 O -0.270 6.270 21 C -0.071 4.071 22 C 0.219 3.781 23 F -0.179 7.179 24 F -0.179 7.179 25 C -0.031 4.031 26 N -0.065 5.065 27 N -0.117 5.117 28 H 0.070 0.930 29 H 0.195 0.805 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.208 0.792 33 H 0.168 0.832 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.145 0.855 41 H 0.124 0.876 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 27.275 -2.215 17.549 32.508 hybrid contribution -0.177 1.272 1.125 1.707 sum 27.098 -0.943 18.674 32.923 Atomic orbital electron populations 1.69695 1.05033 1.25867 1.57362 1.24641 0.95202 0.97155 1.01904 0.86543 0.78931 0.85016 0.77958 1.20947 1.21741 1.20633 1.19034 0.80179 0.94916 1.43295 0.88865 1.42642 1.03927 1.01732 1.91253 1.18940 0.80058 0.89943 1.00273 1.22561 0.99058 1.04323 0.88384 1.23379 0.84213 1.09741 1.02251 1.47021 1.07896 1.47125 1.06706 1.23371 0.84939 1.01022 0.89933 1.23392 1.01175 0.95990 0.81361 1.49101 1.26636 1.45759 1.17126 1.19644 0.80641 0.82543 0.83113 1.90813 1.32428 1.35322 1.78874 1.22141 0.91772 0.99220 0.89649 1.88083 1.47502 1.65836 1.25621 1.23813 0.98723 0.98581 0.85999 1.21991 0.81873 0.78579 0.95656 1.93036 1.96202 1.32760 1.95904 1.93033 1.49538 1.92863 1.82496 1.23509 0.89684 0.97755 0.92111 1.78340 1.16388 1.19807 0.91965 1.75152 0.95738 1.14672 1.26173 0.93000 0.80496 0.93327 0.93522 0.79195 0.83167 0.88196 0.88303 0.89453 0.89368 0.89665 0.89615 0.85498 0.87594 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.77 13.97 55.49 0.78 -28.00 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.89 21.98 27.74 -169.99 -4.71 17.27 16 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.52 6.52 56.52 0.37 -6.15 16 7 C -0.24 -6.77 10.47 -15.06 -0.16 -6.92 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.56 5.40 -61.09 -0.33 -17.89 16 10 C 0.24 4.44 6.82 -5.19 -0.04 4.41 16 11 C -0.01 -0.09 6.62 -82.78 -0.55 -0.64 16 12 C -0.05 -0.54 10.72 -17.04 -0.18 -0.73 16 13 N -0.29 -3.22 3.56 -54.47 -0.19 -3.42 16 14 C 0.11 0.72 5.34 -67.70 -0.36 0.36 16 15 C 0.10 0.71 8.42 -8.50 -0.07 0.64 16 16 N -0.65 -4.23 3.69 -185.03 -0.68 -4.92 16 17 C 0.55 4.95 8.15 -10.98 -0.09 4.86 16 18 O -0.50 -7.10 17.27 -14.35 -0.25 -7.35 16 19 C 0.05 0.28 6.25 36.01 0.22 0.51 16 20 O -0.35 -2.94 9.76 -55.14 -0.54 -3.48 16 21 C 0.01 0.03 6.16 37.16 0.23 0.25 16 22 C 0.27 1.32 5.63 37.16 0.21 1.53 16 23 F -0.20 -1.66 17.28 2.25 0.04 -1.62 16 24 F -0.20 -1.64 17.28 2.25 0.04 -1.60 16 25 C 0.09 0.38 7.77 -8.44 -0.07 0.31 16 26 N -0.09 -1.31 13.16 60.35 0.79 -0.52 16 27 N -0.25 -4.48 12.41 33.29 0.41 -4.07 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.36 8.54 5.52 -40.82 -0.23 8.32 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.19 1.51 6.78 -52.49 -0.36 1.15 16 33 H 0.15 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.09 0.11 8.14 -51.93 -0.42 -0.32 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 40 H 0.13 0.01 8.14 -51.93 -0.42 -0.41 16 41 H 0.11 0.34 6.38 -51.93 -0.33 0.01 16 42 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -40.64 374.71 -5.10 -45.74 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.15 Total: -0.48 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.94 Total: 4.68 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: 0.78 Total: -58.80 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.79 Total: -10.82 kcal Atomic # 9 Polarization: -3.30 SS G_CDS: 0.08 Total: -3.22 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.27 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -40.64 -5.10 -45.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105290492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.929 kcal (2) G-P(sol) polarization free energy of solvation -40.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds