Wall clock time and date at job start Wed Apr 1 2020 03:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86792 * 119.99956 * 2 1 4 4 H 1.48503 * 109.46914 * 269.99409 * 3 2 1 5 5 H 1.48499 * 109.47250 * 29.99617 * 3 2 1 6 6 H 1.48500 * 109.47079 * 149.99807 * 3 2 1 7 7 C 1.38814 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00265 * 359.97438 * 7 2 1 9 9 N 1.36933 * 120.00064 * 180.02562 * 7 2 1 10 10 C 1.46504 * 120.00208 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47174 * 179.97438 * 10 9 7 12 12 C 1.35353 * 126.74884 * 95.24274 * 11 10 9 13 13 N 1.35316 * 106.17181 * 180.12613 * 12 11 10 14 14 C 1.46499 * 125.86841 * 179.90219 * 13 12 11 15 15 C 1.53504 * 114.20382 * 84.71602 * 14 13 12 16 16 N 1.47066 * 88.04678 * 220.37387 * 15 14 13 17 17 C 1.34779 * 136.05579 * 207.05024 * 16 15 14 18 18 O 1.21279 * 120.00073 * 0.02562 * 17 16 15 19 19 C 1.50700 * 120.00040 * 180.02562 * 17 16 15 20 20 O 1.42897 * 109.47187 * 180.02562 * 19 17 16 21 21 C 1.42904 * 113.99960 * 180.02562 * 20 19 17 22 22 C 1.52996 * 109.47160 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.47311 * 300.00237 * 22 21 20 24 24 F 1.39903 * 109.46986 * 59.99843 * 22 21 20 25 25 C 1.47064 * 87.88659 * 27.09306 * 16 15 14 26 26 N 1.28712 * 108.26333 * 359.64225 * 13 12 11 27 27 N 1.28630 * 110.18000 * 0.22465 * 26 13 12 28 28 H 0.96995 * 120.00211 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99966 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.47322 * 59.99285 * 10 9 7 31 31 H 1.08998 * 109.46565 * 299.99388 * 10 9 7 32 32 H 1.07997 * 126.91327 * 0.02562 * 12 11 10 33 33 H 1.09002 * 113.41645 * 217.91422 * 14 13 12 34 34 H 1.09002 * 113.46865 * 105.56483 * 15 14 13 35 35 H 1.08999 * 113.46581 * 335.18259 * 15 14 13 36 36 H 1.08999 * 109.47263 * 300.00593 * 19 17 16 37 37 H 1.09004 * 109.46716 * 60.00256 * 19 17 16 38 38 H 1.09002 * 109.46779 * 300.00332 * 21 20 19 39 39 H 1.09002 * 109.47034 * 60.00133 * 21 20 19 40 40 H 1.08998 * 109.47193 * 180.02562 * 22 21 20 41 41 H 1.08999 * 113.47096 * 87.65665 * 25 16 15 42 42 H 1.09005 * 113.46966 * 218.04058 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4476 2.6526 0.6999 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.5937 -2.1956 0.0011 12 6 6.4080 -2.1451 1.0811 13 7 7.6451 -1.8681 0.6077 14 6 8.8583 -1.7147 1.4144 15 6 9.5682 -3.0360 1.7409 16 7 9.8110 -2.5130 3.0938 17 6 10.7305 -2.7091 4.0595 18 8 11.6381 -3.4938 3.8823 19 6 10.6309 -1.9534 5.3595 20 8 11.7125 -2.3305 6.2138 21 6 11.7113 -1.6680 7.4800 22 6 12.9069 -2.1456 8.3066 23 9 12.8158 -3.5277 8.5032 24 9 14.0927 -1.8486 7.6260 25 6 8.6083 -1.6827 2.9297 26 7 7.5736 -1.7680 -0.6735 27 7 6.3637 -1.9581 -1.0667 28 1 -0.4850 0.8400 -0.0004 29 1 3.8646 -0.3622 0.0007 30 1 3.8490 -3.0424 -0.8890 31 1 3.8484 -3.0426 0.8909 32 1 6.1267 -2.2941 2.1131 33 1 9.5215 -0.9283 1.0541 34 1 10.4808 -3.1922 1.1656 35 1 8.9052 -3.9010 1.7224 36 1 10.6806 -0.8826 5.1620 37 1 9.6842 -2.1896 5.8454 38 1 11.7827 -0.5912 7.3267 39 1 10.7872 -1.8991 8.0100 40 1 12.9057 -1.6406 9.2725 41 1 7.6889 -2.1867 3.2277 42 1 8.7043 -0.6885 3.3662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105290492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:55 Heat of formation + Delta-G solvation = -37.121892 kcal Electronic energy + Delta-G solvation = -28783.462051 eV Core-core repulsion = 24052.547150 eV Total energy + Delta-G solvation = -4730.914901 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.83742 -47.91248 -44.36615 -41.65541 -39.71395 -38.40334 -36.96389 -34.86162 -33.73140 -31.98310 -31.87395 -30.67574 -28.26049 -28.02965 -27.03440 -24.95325 -24.32522 -23.84777 -22.45862 -21.94720 -20.33184 -19.91302 -18.94468 -18.78938 -18.45218 -18.34162 -17.61696 -17.45969 -17.16840 -16.93525 -16.51846 -16.40137 -16.12820 -16.01679 -15.48605 -15.06479 -14.91362 -14.75299 -14.68520 -14.37161 -14.29062 -14.12224 -13.89506 -13.85827 -13.61765 -13.28401 -13.19643 -13.02781 -12.87970 -12.58450 -12.39061 -12.07747 -11.86788 -11.86186 -11.77984 -11.15772 -11.05028 -10.98100 -10.92511 -10.26835 -10.08611 -9.28634 -7.99059 -5.32699 0.54100 0.90264 1.27941 1.37281 1.43608 1.44752 1.50864 1.65865 2.45704 2.51188 2.67715 2.94995 3.13676 3.31378 3.36858 3.44403 3.53407 3.60470 3.68534 3.84364 3.96117 4.08884 4.09489 4.14150 4.17401 4.19549 4.32916 4.35199 4.37928 4.49378 4.51648 4.54320 4.65838 4.87110 5.12154 5.17159 5.61422 5.79025 5.80625 6.24106 6.32635 6.87006 7.09377 7.48702 7.84134 8.03831 9.21985 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.016329 B = 0.001804 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.362934 B =15514.885067 C =16483.497467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.953 3.047 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.251 1.251 7 C -0.230 4.230 8 H 0.066 0.934 9 N -0.751 5.751 10 C 0.238 3.762 11 C -0.041 4.041 12 C -0.011 4.011 13 N -0.276 5.276 14 C 0.105 3.895 15 C 0.097 3.903 16 N -0.642 5.642 17 C 0.545 3.455 18 O -0.571 6.571 19 C 0.054 3.946 20 O -0.401 6.401 21 C 0.003 3.997 22 C 0.254 3.746 23 F -0.224 7.224 24 F -0.224 7.224 25 C 0.105 3.895 26 N -0.107 5.107 27 N -0.295 5.295 28 H 0.258 0.742 29 H 0.364 0.636 30 H 0.031 0.969 31 H 0.071 0.929 32 H 0.238 0.762 33 H 0.165 0.835 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.178 0.822 41 H 0.125 0.875 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.002 0.183 21.522 34.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.252 4.252 3 Si 0.780 3.220 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.175 1.175 7 C -0.361 4.361 8 H 0.084 0.916 9 N -0.397 5.397 10 C 0.110 3.890 11 C -0.179 4.179 12 C -0.162 4.162 13 N -0.070 5.070 14 C 0.003 3.997 15 C -0.027 4.027 16 N -0.379 5.379 17 C 0.336 3.664 18 O -0.448 6.448 19 C -0.024 4.024 20 O -0.320 6.320 21 C -0.074 4.074 22 C 0.201 3.799 23 F -0.206 7.206 24 F -0.205 7.205 25 C -0.018 4.018 26 N -0.085 5.085 27 N -0.162 5.162 28 H 0.067 0.933 29 H 0.196 0.804 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.254 0.746 33 H 0.183 0.817 34 H 0.108 0.892 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.195 0.805 41 H 0.143 0.857 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 28.467 -0.284 20.262 34.943 hybrid contribution -0.477 0.540 0.290 0.777 sum 27.990 0.256 20.552 34.726 Atomic orbital electron populations 1.69867 1.06963 1.26619 1.59714 1.25428 0.96037 1.01000 1.02781 0.85447 0.78742 0.80143 0.77626 1.21714 1.21814 1.17526 1.19041 0.82178 0.93803 1.41076 0.91630 1.42651 1.02461 1.03597 1.91031 1.18932 0.81758 0.87917 1.00359 1.22257 0.98124 1.07649 0.89879 1.23866 0.83344 1.06048 1.02983 1.47299 1.09005 1.44776 1.05873 1.23774 0.83593 1.01079 0.91290 1.23417 1.00892 0.96371 0.82017 1.49067 1.27000 1.45523 1.16320 1.20493 0.79733 0.81855 0.84332 1.90782 1.35247 1.38463 1.80315 1.22344 0.92335 1.00233 0.87512 1.88027 1.49008 1.67399 1.27591 1.24094 0.99093 0.99771 0.84400 1.22877 0.81414 0.77491 0.98114 1.92974 1.96286 1.35211 1.96110 1.92973 1.51320 1.92921 1.83331 1.23748 0.89056 0.99485 0.89506 1.78252 1.15393 1.20897 0.93977 1.75090 0.96936 1.16278 1.27927 0.93330 0.80378 0.95111 0.91114 0.74618 0.81744 0.89237 0.88314 0.86009 0.86217 0.86821 0.86915 0.80501 0.85686 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.63 13.97 21.65 0.30 -61.33 16 2 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 3 Si 0.95 44.84 27.74 68.60 1.90 46.74 16 4 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.25 -10.46 6.52 99.48 0.65 -9.81 16 7 C -0.23 -12.75 10.47 84.03 0.88 -11.87 16 8 H 0.07 3.92 8.06 -2.91 -0.02 3.90 16 9 N -0.75 -34.20 5.40 -347.18 -1.87 -36.08 16 10 C 0.24 8.64 6.82 85.63 0.58 9.22 16 11 C -0.04 -1.25 6.62 41.60 0.28 -0.98 16 12 C -0.01 -0.22 10.72 83.49 0.89 0.68 16 13 N -0.28 -5.14 3.56 -326.24 -1.16 -6.30 16 14 C 0.10 0.96 5.34 45.49 0.24 1.21 16 15 C 0.10 1.11 8.42 83.18 0.70 1.81 16 16 N -0.64 -6.35 3.69 -857.68 -3.17 -9.51 16 17 C 0.54 8.72 8.15 87.66 0.71 9.43 16 18 O -0.57 -16.41 17.27 16.01 0.28 -16.13 16 19 C 0.05 0.39 6.25 71.24 0.44 0.83 16 20 O -0.40 -5.91 9.76 -129.94 -1.27 -7.17 16 21 C 0.00 0.01 6.16 71.98 0.44 0.46 16 22 C 0.25 2.00 5.63 71.98 0.41 2.41 16 23 F -0.22 -3.67 17.28 44.97 0.78 -2.89 16 24 F -0.22 -3.61 17.28 44.97 0.78 -2.84 16 25 C 0.10 0.26 7.77 83.22 0.65 0.91 16 26 N -0.11 -3.06 13.16 37.02 0.49 -2.57 16 27 N -0.30 -10.33 12.41 -48.60 -0.60 -10.93 16 28 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.36 16.28 5.52 -92.71 -0.51 15.77 16 30 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.24 2.19 6.78 -2.91 -0.02 2.17 16 33 H 0.17 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.12 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.18 -0.53 8.14 -2.39 -0.02 -0.55 16 41 H 0.13 -0.06 6.38 -2.39 -0.02 -0.08 16 42 H 0.14 -0.56 8.14 -2.38 -0.02 -0.58 16 Total: -1.00 -95.81 374.71 3.66 -92.15 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 0.51 Total: 5.79 kcal Atomic # 6 Polarization: 4.37 SS G_CDS: 6.70 Total: 11.07 kcal Atomic # 7 Polarization: -120.71 SS G_CDS: -6.01 Total: -126.72 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.99 Total: -23.31 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 1.55 Total: -5.73 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.90 Total: 46.74 kcal Total: -95.81 3.66 -92.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105290492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.027 kcal (2) G-P(sol) polarization free energy of solvation -95.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds