Wall clock time and date at job start Wed Apr 1 2020 03:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 126.38738 * 2 1 4 4 C 1.41501 * 105.50659 * 179.90119 * 3 2 1 5 5 C 1.47706 * 126.52153 * 180.10309 * 4 3 2 6 6 O 1.21581 * 119.99940 * 0.29459 * 5 4 3 7 7 N 1.34772 * 120.00316 * 180.29128 * 5 4 3 8 8 C 1.46501 * 120.00448 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47499 * 180.02562 * 8 7 5 10 10 N 1.46893 * 109.47245 * 179.97438 * 9 8 7 11 11 C 1.46901 * 111.00119 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47425 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00065 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00226 * 179.97438 * 12 11 10 15 15 C 1.37094 * 120.00041 * 180.02562 * 14 12 11 16 16 H 1.08009 * 120.00150 * 359.97438 * 15 14 12 17 17 C 1.38948 * 120.00041 * 180.02562 * 15 14 12 18 18 N 1.31419 * 119.99959 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00078 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46617 * 90.00394 * 19 17 15 21 21 H 1.48494 * 109.47338 * 210.00364 * 19 17 15 22 22 H 1.48495 * 109.47012 * 330.00775 * 19 17 15 23 23 N 1.31814 * 106.96157 * 0.36784 * 4 3 2 24 24 N 1.28474 * 110.06938 * 359.76865 * 23 4 3 25 25 C 1.46495 * 124.88084 * 180.02562 * 24 23 4 26 26 F 1.39895 * 109.47017 * 119.97805 * 25 24 23 27 27 F 1.39896 * 109.47519 * 239.98058 * 25 24 23 28 28 H 1.09002 * 109.47152 * 269.68487 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68588 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68569 * 1 2 3 31 31 H 1.08003 * 127.24747 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99977 * 359.97438 * 7 5 4 33 33 H 1.09008 * 109.46573 * 299.99922 * 8 7 5 34 34 H 1.08999 * 109.47516 * 59.99586 * 8 7 5 35 35 H 1.09003 * 109.46685 * 299.99695 * 9 8 7 36 36 H 1.08999 * 109.47096 * 59.99302 * 9 8 7 37 37 H 1.00898 * 111.00226 * 56.04271 * 10 9 8 38 38 H 1.08997 * 109.47037 * 299.99933 * 11 10 9 39 39 H 1.09003 * 109.47179 * 59.99997 * 11 10 9 40 40 H 0.96996 * 119.99728 * 0.02562 * 14 12 11 41 41 H 0.96996 * 119.99672 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.47080 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0024 5 6 4.8765 1.3811 0.0054 6 8 4.8214 2.5956 0.0115 7 7 6.0730 0.7609 0.0015 8 6 7.3073 1.5501 0.0051 9 6 8.5141 0.6097 -0.0012 10 7 9.7516 1.4011 0.0018 11 6 10.9340 0.5294 -0.0035 12 6 12.1815 1.3748 -0.0009 13 8 12.0942 2.5846 0.0053 14 7 13.3942 0.7867 -0.0043 15 6 14.5290 1.5559 -0.0014 16 1 14.4513 2.6331 0.0032 17 6 15.7792 0.9496 -0.0055 18 7 16.8671 1.6869 -0.0033 19 14 15.9138 -0.9136 -0.0143 20 1 15.9480 -1.4007 -1.4168 21 1 17.1594 -1.3233 0.6826 22 1 14.7407 -1.4978 0.6841 23 7 3.5420 -0.7297 -0.0045 24 7 2.3080 -1.0871 -0.0060 25 6 1.8376 -2.4744 -0.0125 26 9 1.0640 -2.7099 1.1290 27 9 1.0627 -2.6988 -1.1555 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 2.0057 2.1259 0.0004 32 1 6.1170 -0.2081 -0.0030 33 1 7.3360 2.1835 -0.8816 34 1 7.3370 2.1741 0.8983 35 1 8.4855 -0.0240 0.8853 36 1 8.4841 -0.0139 -0.8947 37 1 9.7736 2.0350 0.7865 38 1 10.9222 -0.1042 0.8834 39 1 10.9209 -0.0954 -0.8966 40 1 13.4640 -0.1807 -0.0089 41 1 17.7398 1.2636 -0.0058 42 1 2.6942 -3.1485 -0.0165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128311139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:06 Heat of formation + Delta-G solvation = -75.054849 kcal Electronic energy + Delta-G solvation = -28276.148321 eV Core-core repulsion = 23543.588524 eV Total energy + Delta-G solvation = -4732.559797 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.17622 -48.24409 -43.29085 -39.70180 -38.50851 -36.41096 -34.51203 -33.87298 -33.51644 -33.35349 -31.67399 -29.71654 -27.88627 -27.25726 -26.04667 -24.21334 -23.27963 -22.12537 -21.83332 -20.38519 -19.41091 -18.73051 -18.65856 -18.43841 -18.26637 -17.40526 -16.44594 -16.23606 -16.14753 -15.83983 -15.25273 -15.11691 -14.97269 -14.84215 -14.56084 -14.46872 -14.24412 -13.99353 -13.94195 -13.78280 -13.56967 -13.48876 -13.19029 -13.07244 -12.57536 -12.54485 -12.29016 -11.90855 -11.63134 -11.55917 -11.50465 -11.16011 -10.60742 -10.52481 -10.13665 -9.98106 -9.58822 -9.58197 -9.33321 -8.63581 -8.24798 -8.17996 -6.31494 -3.83087 0.82024 1.05132 1.48116 2.68358 2.72499 3.00716 3.01209 3.06060 3.14284 3.26548 3.72422 3.76664 3.84055 3.97159 4.09232 4.18283 4.32999 4.71426 4.79955 4.85881 4.88536 4.96875 5.02818 5.16621 5.21406 5.31088 5.32637 5.55944 5.65174 5.74895 5.77086 5.83556 5.87796 5.91610 6.10115 6.93965 6.98482 7.26519 7.47466 7.57297 7.85891 8.13840 8.58914 8.94414 9.41577 9.81493 10.81599 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.001502 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.128194 B =18635.851302 C =19694.250349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.030 3.970 3 C -0.169 4.169 4 C 0.019 3.981 5 C 0.603 3.397 6 O -0.521 6.521 7 N -0.713 5.713 8 C 0.119 3.881 9 C 0.049 3.951 10 N -0.665 5.665 11 C 0.050 3.950 12 C 0.449 3.551 13 O -0.563 6.563 14 N -0.590 5.590 15 C -0.306 4.306 16 H 0.120 0.880 17 C 0.041 3.959 18 N -0.881 5.881 19 Si 0.880 3.120 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.270 1.270 23 N -0.253 5.253 24 N -0.346 5.346 25 C 0.496 3.504 26 F -0.173 7.173 27 F -0.173 7.173 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.171 0.829 32 H 0.406 0.594 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.078 0.922 37 H 0.354 0.646 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.496 -13.910 0.866 38.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.196 4.196 4 C -0.145 4.145 5 C 0.386 3.614 6 O -0.395 6.395 7 N -0.365 5.365 8 C -0.004 4.004 9 C -0.081 4.081 10 N -0.298 5.298 11 C -0.083 4.083 12 C 0.234 3.766 13 O -0.445 6.445 14 N -0.230 5.230 15 C -0.434 4.434 16 H 0.138 0.862 17 C -0.162 4.162 18 N -0.521 5.521 19 Si 0.707 3.293 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 N -0.085 5.085 24 N -0.143 5.143 25 C 0.362 3.638 26 F -0.154 7.154 27 F -0.155 7.155 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.189 0.811 32 H 0.241 0.759 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.097 0.903 37 H 0.174 0.826 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -34.762 -13.209 0.188 37.188 hybrid contribution -0.266 -1.787 0.898 2.018 sum -35.028 -14.996 1.086 38.119 Atomic orbital electron populations 1.20504 0.85915 1.04639 1.03983 1.21612 0.95958 0.86362 1.05159 1.21662 0.90115 0.99950 1.07911 1.22119 0.95625 0.89243 1.07555 1.16741 0.81406 0.86357 0.76879 1.90856 1.86516 1.12606 1.49478 1.45737 1.05346 1.10938 1.74516 1.21364 0.81244 0.93927 1.03904 1.22076 0.89512 0.95295 1.01198 1.59921 0.99349 1.19022 1.51529 1.21702 0.90250 0.94892 1.01459 1.19672 0.83857 0.88883 0.84140 1.90579 1.86214 1.14066 1.53600 1.42192 1.05916 1.07751 1.67092 1.19444 0.81790 0.94113 1.48092 0.86239 1.25044 0.95078 0.98393 0.97646 1.69626 0.97745 1.35392 1.49302 0.86661 0.78428 0.85322 0.78891 1.19595 1.20196 1.19563 1.73458 1.00087 1.15387 1.19556 1.46467 1.04468 1.06869 1.56507 1.21187 0.88510 0.81722 0.72365 1.93160 1.78031 1.93376 1.50856 1.93151 1.77948 1.93592 1.50768 0.89634 0.90780 0.88796 0.81133 0.75926 0.89685 0.90866 0.94772 0.90324 0.82584 0.93573 0.89311 0.79694 0.91605 0.80998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 9.96 36.01 0.36 -0.01 16 2 C 0.03 0.21 6.79 -82.21 -0.56 -0.34 16 3 C -0.17 -1.48 10.73 -39.37 -0.42 -1.90 16 4 C 0.02 0.19 7.13 -82.77 -0.59 -0.40 16 5 C 0.60 7.08 7.82 -12.39 -0.10 6.98 16 6 O -0.52 -7.85 16.93 5.29 0.09 -7.76 16 7 N -0.71 -6.93 5.55 -61.29 -0.34 -7.27 16 8 C 0.12 1.29 5.93 -4.04 -0.02 1.27 16 9 C 0.05 0.52 5.80 -3.83 -0.02 0.50 16 10 N -0.66 -9.86 6.13 -115.06 -0.70 -10.57 16 11 C 0.05 0.79 6.17 -4.98 -0.03 0.76 16 12 C 0.45 10.08 7.82 -10.99 -0.09 10.00 16 13 O -0.56 -15.10 15.78 5.55 0.09 -15.01 16 14 N -0.59 -13.93 5.09 -10.96 -0.06 -13.99 16 15 C -0.31 -8.64 10.16 -14.94 -0.15 -8.79 16 16 H 0.12 3.87 7.39 -52.48 -0.39 3.48 16 17 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 18 N -0.88 -25.70 13.96 55.50 0.77 -24.92 16 19 Si 0.88 19.20 27.74 -169.99 -4.71 14.48 16 20 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 23 N -0.25 -2.17 11.67 33.42 0.39 -1.78 16 24 N -0.35 -2.45 3.56 -62.37 -0.22 -2.67 16 25 C 0.50 2.00 5.86 59.84 0.35 2.35 16 26 F -0.17 -0.83 17.30 2.25 0.04 -0.79 16 27 F -0.17 -0.83 16.41 2.25 0.04 -0.79 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.27 6.90 -51.93 -0.36 -0.09 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.17 1.29 8.06 -52.48 -0.42 0.87 16 32 H 0.41 3.08 8.20 -40.82 -0.33 2.74 16 33 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.35 5.47 8.43 -39.29 -0.33 5.13 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.37 7.61 5.76 -40.82 -0.24 7.38 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.02 16 42 H 0.17 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 376.85 15.07 5.68 5.68 Total: -1.00 -36.37 376.85 -5.35 -41.72 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -5.04 Total: 12.22 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: -1.37 Total: 11.45 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: -0.16 Total: -61.20 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: 0.18 Total: -22.77 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.08 Total: -1.59 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.37 -5.35 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128311139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.335 kcal (2) G-P(sol) polarization free energy of solvation -36.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds