Wall clock time and date at job start Wed Apr 1 2020 03:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35359 * 126.38738 * 2 1 4 4 C 1.41501 * 105.50659 * 179.90119 * 3 2 1 5 5 C 1.47706 * 126.52153 * 180.10309 * 4 3 2 6 6 O 1.21581 * 119.99940 * 0.29459 * 5 4 3 7 7 N 1.34772 * 120.00316 * 180.29128 * 5 4 3 8 8 C 1.46501 * 120.00448 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47499 * 180.02562 * 8 7 5 10 10 N 1.46893 * 109.47245 * 179.97438 * 9 8 7 11 11 C 1.46901 * 111.00119 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47425 * 179.97438 * 11 10 9 13 13 O 1.21293 * 120.00065 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00226 * 179.97438 * 12 11 10 15 15 C 1.37094 * 120.00041 * 180.02562 * 14 12 11 16 16 H 1.08009 * 120.00150 * 359.97438 * 15 14 12 17 17 C 1.38948 * 120.00041 * 180.02562 * 15 14 12 18 18 N 1.31419 * 119.99959 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00078 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46617 * 90.00394 * 19 17 15 21 21 H 1.48494 * 109.47338 * 210.00364 * 19 17 15 22 22 H 1.48495 * 109.47012 * 330.00775 * 19 17 15 23 23 N 1.31814 * 106.96157 * 0.36784 * 4 3 2 24 24 N 1.28474 * 110.06938 * 359.76865 * 23 4 3 25 25 C 1.46495 * 124.88084 * 180.02562 * 24 23 4 26 26 F 1.39895 * 109.47017 * 119.97805 * 25 24 23 27 27 F 1.39896 * 109.47519 * 239.98058 * 25 24 23 28 28 H 1.09002 * 109.47152 * 269.68487 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.68588 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.68569 * 1 2 3 31 31 H 1.08003 * 127.24747 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99977 * 359.97438 * 7 5 4 33 33 H 1.09008 * 109.46573 * 299.99922 * 8 7 5 34 34 H 1.08999 * 109.47516 * 59.99586 * 8 7 5 35 35 H 1.09003 * 109.46685 * 299.99695 * 9 8 7 36 36 H 1.08999 * 109.47096 * 59.99302 * 9 8 7 37 37 H 1.00898 * 111.00226 * 56.04271 * 10 9 8 38 38 H 1.08997 * 109.47037 * 299.99933 * 11 10 9 39 39 H 1.09003 * 109.47179 * 59.99997 * 11 10 9 40 40 H 0.96996 * 119.99728 * 0.02562 * 14 12 11 41 41 H 0.96996 * 119.99672 * 179.97438 * 18 17 15 42 42 H 1.09003 * 109.47080 * 359.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6321 0.5853 0.0024 5 6 4.8765 1.3811 0.0054 6 8 4.8214 2.5956 0.0115 7 7 6.0730 0.7609 0.0015 8 6 7.3073 1.5501 0.0051 9 6 8.5141 0.6097 -0.0012 10 7 9.7516 1.4011 0.0018 11 6 10.9340 0.5294 -0.0035 12 6 12.1815 1.3748 -0.0009 13 8 12.0942 2.5846 0.0053 14 7 13.3942 0.7867 -0.0043 15 6 14.5290 1.5559 -0.0014 16 1 14.4513 2.6331 0.0032 17 6 15.7792 0.9496 -0.0055 18 7 16.8671 1.6869 -0.0033 19 14 15.9138 -0.9136 -0.0143 20 1 15.9480 -1.4007 -1.4168 21 1 17.1594 -1.3233 0.6826 22 1 14.7407 -1.4978 0.6841 23 7 3.5420 -0.7297 -0.0045 24 7 2.3080 -1.0871 -0.0060 25 6 1.8376 -2.4744 -0.0125 26 9 1.0640 -2.7099 1.1290 27 9 1.0627 -2.6988 -1.1555 28 1 -0.3633 -0.0057 1.0277 29 1 -0.3633 -0.8872 -0.5187 30 1 -0.3633 0.8928 -0.5090 31 1 2.0057 2.1259 0.0004 32 1 6.1170 -0.2081 -0.0030 33 1 7.3360 2.1835 -0.8816 34 1 7.3370 2.1741 0.8983 35 1 8.4855 -0.0240 0.8853 36 1 8.4841 -0.0139 -0.8947 37 1 9.7736 2.0350 0.7865 38 1 10.9222 -0.1042 0.8834 39 1 10.9209 -0.0954 -0.8966 40 1 13.4640 -0.1807 -0.0089 41 1 17.7398 1.2636 -0.0058 42 1 2.6942 -3.1485 -0.0165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128311139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:05 Heat of formation + Delta-G solvation = -106.531448 kcal Electronic energy + Delta-G solvation = -28277.513249 eV Core-core repulsion = 23543.588524 eV Total energy + Delta-G solvation = -4733.924725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.50760 -48.57778 -43.88025 -40.63083 -40.26600 -37.51930 -36.04095 -35.33416 -34.14599 -33.85917 -33.73321 -30.78404 -28.35188 -28.22586 -27.15547 -25.53447 -24.28336 -23.01570 -22.41498 -21.28738 -21.12676 -20.28379 -19.17519 -19.09316 -18.71499 -18.16120 -17.63215 -17.30912 -17.12914 -16.92171 -16.69263 -16.12874 -15.83449 -15.49994 -15.38466 -15.21146 -15.10890 -14.89592 -14.81307 -14.72413 -14.61929 -14.27240 -14.17768 -13.95795 -13.86135 -13.64269 -13.39279 -12.96888 -12.92093 -12.60552 -12.41964 -12.39675 -12.16306 -11.96461 -11.50266 -11.48883 -10.80914 -10.44678 -10.23976 -10.21194 -10.14109 -9.37488 -8.40201 -6.01588 0.15172 0.61384 0.83609 1.31356 1.37660 1.46423 1.86798 1.97040 2.17855 2.24682 2.39510 2.78746 2.95820 3.16123 3.37849 3.40680 3.44414 3.55510 3.79393 3.90007 4.10714 4.18581 4.29665 4.39055 4.46573 4.48244 4.60078 4.60495 4.80882 4.87473 4.90075 4.93714 5.05711 5.23506 5.38803 5.53338 5.88217 6.01185 6.24691 6.31950 6.56536 6.60633 6.89156 7.02533 7.40688 7.97909 8.77536 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.022285 B = 0.001502 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.128194 B =18635.851302 C =19694.250349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.034 3.966 3 C -0.190 4.190 4 C -0.005 4.005 5 C 0.602 3.398 6 O -0.565 6.565 7 N -0.698 5.698 8 C 0.125 3.875 9 C 0.060 3.940 10 N -0.689 5.689 11 C 0.065 3.935 12 C 0.446 3.554 13 O -0.616 6.616 14 N -0.590 5.590 15 C -0.331 4.331 16 H 0.053 0.947 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.257 1.257 21 H -0.276 1.276 22 H -0.228 1.228 23 N -0.246 5.246 24 N -0.346 5.346 25 C 0.493 3.507 26 F -0.176 7.176 27 F -0.177 7.177 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.172 0.828 32 H 0.419 0.581 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.347 0.653 38 H 0.084 0.916 39 H 0.120 0.880 40 H 0.391 0.609 41 H 0.279 0.721 42 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.556 -18.683 0.982 41.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 C -0.217 4.217 4 C -0.168 4.168 5 C 0.386 3.614 6 O -0.441 6.441 7 N -0.350 5.350 8 C 0.001 3.999 9 C -0.069 4.069 10 N -0.322 5.322 11 C -0.067 4.067 12 C 0.234 3.766 13 O -0.501 6.501 14 N -0.231 5.231 15 C -0.460 4.460 16 H 0.071 0.929 17 C -0.215 4.215 18 N -0.576 5.576 19 Si 0.787 3.213 20 H -0.182 1.182 21 H -0.201 1.201 22 H -0.151 1.151 23 N -0.079 5.079 24 N -0.144 5.144 25 C 0.361 3.639 26 F -0.157 7.157 27 F -0.158 7.158 28 H 0.114 0.886 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.190 0.810 32 H 0.257 0.743 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.166 0.834 38 H 0.101 0.899 39 H 0.137 0.863 40 H 0.227 0.773 41 H 0.088 0.912 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -36.858 -18.045 0.301 41.039 hybrid contribution 0.271 -0.199 0.856 0.919 sum -36.587 -18.244 1.157 40.900 Atomic orbital electron populations 1.20633 0.83738 1.05589 1.04937 1.22040 0.97235 0.85937 1.03545 1.21829 0.90080 1.00786 1.08999 1.21925 0.95294 0.89957 1.09650 1.16998 0.82303 0.86003 0.76059 1.90827 1.87199 1.14479 1.51638 1.45568 1.04454 1.11478 1.73535 1.21193 0.82116 0.94089 1.02531 1.22055 0.86937 0.94740 1.03211 1.59887 1.00627 1.19975 1.51726 1.21628 0.86670 0.93841 1.04568 1.21056 0.85447 0.89004 0.81122 1.90559 1.87276 1.17114 1.55117 1.42004 1.05012 1.08360 1.67772 1.19016 0.84511 0.92036 1.50473 0.92866 1.26161 0.93642 1.05695 0.95985 1.69817 0.98744 1.38766 1.50263 0.85329 0.79882 0.76110 0.79952 1.18155 1.20146 1.15126 1.73373 1.00940 1.14432 1.19203 1.46862 1.04056 1.08132 1.55317 1.21799 0.89467 0.80728 0.71921 1.93156 1.78295 1.93179 1.51110 1.93147 1.78216 1.93400 1.51029 0.88556 0.90169 0.87514 0.81012 0.74350 0.91699 0.91867 0.92165 0.88540 0.83446 0.89870 0.86251 0.77337 0.91162 0.77278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.55 9.96 71.24 0.71 0.16 16 2 C 0.03 0.43 6.79 41.40 0.28 0.72 16 3 C -0.19 -3.25 10.73 22.41 0.24 -3.01 16 4 C -0.01 -0.11 7.13 42.45 0.30 0.20 16 5 C 0.60 14.16 7.82 86.75 0.68 14.84 16 6 O -0.56 -17.70 16.93 -3.97 -0.07 -17.76 16 7 N -0.70 -12.75 5.55 -466.09 -2.59 -15.34 16 8 C 0.12 2.61 5.93 86.38 0.51 3.12 16 9 C 0.06 1.07 5.80 86.30 0.50 1.58 16 10 N -0.69 -19.11 6.13 -517.95 -3.17 -22.28 16 11 C 0.07 1.84 6.17 85.56 0.53 2.37 16 12 C 0.45 19.80 7.82 87.66 0.69 20.48 16 13 O -0.62 -34.30 15.78 -3.07 -0.05 -34.35 16 14 N -0.59 -27.38 5.09 -306.98 -1.56 -28.94 16 15 C -0.33 -19.42 10.16 84.04 0.85 -18.56 16 16 H 0.05 3.74 7.39 -2.91 -0.02 3.72 16 17 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 18 N -0.94 -56.50 13.96 21.66 0.30 -56.20 16 19 Si 0.97 38.16 27.74 68.60 1.90 40.07 16 20 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 21 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 22 H -0.23 -7.40 6.52 99.48 0.65 -6.75 16 23 N -0.25 -3.79 11.67 -48.18 -0.56 -4.35 16 24 N -0.35 -4.18 3.56 -351.22 -1.25 -5.43 16 25 C 0.49 2.62 5.86 127.77 0.75 3.37 16 26 F -0.18 -1.25 17.30 44.97 0.78 -0.47 16 27 F -0.18 -1.26 16.41 44.97 0.74 -0.52 16 28 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.40 6.90 -2.39 -0.02 0.39 16 30 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 32 H 0.42 5.35 8.20 -92.71 -0.76 4.59 16 33 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.35 10.49 8.43 -89.70 -0.76 9.74 16 38 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 40 H 0.39 14.73 5.76 -92.71 -0.53 14.19 16 41 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 42 H 0.21 -0.48 8.14 -2.39 -0.02 -0.50 16 Total: -1.00 -86.60 376.85 -0.02 -86.62 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.99 Total: 34.14 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 6.51 Total: 24.83 kcal Atomic # 7 Polarization: -123.72 SS G_CDS: -8.84 Total: -132.55 kcal Atomic # 8 Polarization: -52.00 SS G_CDS: -0.12 Total: -52.11 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 1.52 Total: -0.99 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.07 kcal Total: -86.60 -0.02 -86.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128311139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.915 kcal (2) G-P(sol) polarization free energy of solvation -86.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds