Wall clock time and date at job start Wed Apr 1 2020 03:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86800 * 119.99566 * 2 1 4 4 H 1.48500 * 109.46833 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47397 * 299.99874 * 3 2 1 6 6 H 1.48507 * 109.47113 * 60.00324 * 3 2 1 7 7 C 1.38947 * 120.00060 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99438 * 180.02562 * 7 2 1 9 9 N 1.37091 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00279 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99684 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00438 * 179.97438 * 10 9 7 13 13 N 1.46904 * 109.47509 * 180.02562 * 12 10 9 14 14 C 1.46893 * 111.00073 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47217 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47551 * 179.97438 * 15 14 13 17 17 C 1.34777 * 120.00195 * 179.97438 * 16 15 14 18 18 O 1.21573 * 119.99941 * 0.02562 * 17 16 15 19 19 C 1.47711 * 119.99927 * 180.27919 * 17 16 15 20 20 C 1.41506 * 126.51683 * 179.44236 * 19 17 16 21 21 C 1.35362 * 105.49903 * 179.87878 * 20 19 17 22 22 N 1.35035 * 107.23203 * 0.37292 * 21 20 19 23 23 C 1.46505 * 124.88316 * 179.71338 * 22 21 20 24 24 C 1.52993 * 109.46660 * 125.02448 * 23 22 21 25 25 F 1.39906 * 109.47104 * 175.00154 * 24 23 22 26 26 F 1.39902 * 109.46959 * 294.99582 * 24 23 22 27 27 N 1.28463 * 110.22952 * 359.75390 * 22 21 20 28 28 H 0.97002 * 120.00383 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00132 * 359.97438 * 9 7 2 30 30 H 1.09005 * 109.47104 * 59.99618 * 12 10 9 31 31 H 1.09004 * 109.47439 * 299.99837 * 12 10 9 32 32 H 1.00902 * 110.99455 * 303.95479 * 13 12 10 33 33 H 1.09007 * 109.47425 * 60.00063 * 14 13 12 34 34 H 1.08997 * 109.47527 * 299.99494 * 14 13 12 35 35 H 1.08998 * 109.47059 * 59.99997 * 15 14 13 36 36 H 1.09002 * 109.47542 * 300.00431 * 15 14 13 37 37 H 0.97000 * 120.00069 * 0.02562 * 16 15 14 38 38 H 1.07997 * 127.24622 * 0.02562 * 20 19 17 39 39 H 1.08008 * 126.38501 * 180.10697 * 21 20 19 40 40 H 1.09004 * 109.46771 * 245.01705 * 23 22 21 41 41 H 1.08997 * 109.47291 * 5.01975 * 23 22 21 42 42 H 1.09000 * 109.47584 * 54.99646 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8892 2.3965 1.2126 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2440 -4.8629 0.0000 13 7 2.1986 -5.9794 0.0005 14 6 1.4984 -7.2707 0.0017 15 6 2.5233 -8.4067 0.0016 16 7 1.8250 -9.6946 0.0034 17 6 2.5299 -10.8433 0.0031 18 8 3.7451 -10.8108 0.0017 19 6 1.8257 -12.1418 -0.0014 20 6 2.4241 -13.4241 -0.0133 21 6 1.3950 -14.3035 -0.0103 22 7 0.2530 -13.5828 -0.0057 23 6 -1.0970 -14.1521 -0.0073 24 6 -1.8874 -13.5932 1.1774 25 9 -3.2092 -14.0469 1.1118 26 9 -1.3044 -14.0267 2.3730 27 7 0.5206 -12.3264 -0.0006 28 1 -0.4851 0.8400 -0.0004 29 1 0.3535 -2.3907 0.0002 30 1 0.6169 -4.9208 -0.8897 31 1 0.6177 -4.9205 0.8903 32 1 2.8335 -5.9127 -0.7809 33 1 0.8732 -7.3459 -0.8880 34 1 0.8739 -7.3446 0.8920 35 1 3.1488 -8.3318 0.8910 36 1 3.1476 -8.3327 -0.8889 37 1 0.8554 -9.7205 0.0041 38 1 3.4795 -13.6529 -0.0206 39 1 1.4727 -15.3807 -0.0154 40 1 -1.6012 -13.8886 -0.9372 41 1 -1.0340 -15.2369 0.0771 42 1 -1.8749 -12.5039 1.1412 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130008740.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:48 Heat of formation + Delta-G solvation = -88.344561 kcal Electronic energy + Delta-G solvation = -28109.833302 eV Core-core repulsion = 23376.697219 eV Total energy + Delta-G solvation = -4733.136082 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.74202 -47.74539 -43.21528 -39.61146 -38.30887 -36.30194 -34.80634 -34.37001 -33.73719 -31.39550 -31.21924 -30.18010 -29.07919 -26.27807 -25.02094 -23.90071 -22.83659 -22.11021 -21.99990 -20.29004 -19.28551 -18.85214 -18.31173 -17.93885 -17.83714 -17.60053 -16.70311 -16.20017 -16.12380 -15.92199 -15.69423 -14.99558 -14.72065 -14.58320 -14.50242 -14.38821 -14.08890 -14.06909 -13.86069 -13.69422 -13.50807 -13.38253 -13.16864 -13.07439 -12.40766 -12.02595 -11.92157 -11.51945 -11.49450 -11.42037 -11.40282 -11.04584 -10.42529 -10.33586 -10.22135 -9.85068 -9.64377 -9.52013 -9.23434 -8.49710 -8.12106 -7.96310 -6.41820 -3.82537 1.04192 1.55339 1.65292 2.70989 2.85496 3.12909 3.16948 3.27652 3.35301 3.43828 3.51999 3.85252 3.90319 3.99720 4.13279 4.20839 4.33493 4.44288 4.46448 4.71286 4.90298 5.00149 5.14839 5.18803 5.26349 5.28435 5.40810 5.73298 5.80843 5.86909 5.92036 5.95772 6.06927 6.17772 6.26349 7.07965 7.13637 7.39865 7.55796 7.58275 7.96459 8.06487 8.61046 9.18069 9.54012 10.05359 10.75987 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.017763 B = 0.001506 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.939650 B =18591.433912 C =19913.999873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.021 3.979 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.581 6.581 12 C 0.052 3.948 13 N -0.665 5.665 14 C 0.050 3.950 15 C 0.120 3.880 16 N -0.714 5.714 17 C 0.603 3.397 18 O -0.526 6.526 19 C 0.000 4.000 20 C -0.173 4.173 21 C -0.007 4.007 22 N -0.290 5.290 23 C 0.076 3.924 24 C 0.255 3.745 25 F -0.192 7.192 26 F -0.196 7.196 27 N -0.268 5.268 28 H 0.271 0.729 29 H 0.392 0.608 30 H 0.045 0.955 31 H 0.087 0.913 32 H 0.353 0.647 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.405 0.595 38 H 0.168 0.832 39 H 0.186 0.814 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.831 -33.298 -1.446 34.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.201 5.201 10 C 0.226 3.774 11 O -0.465 6.465 12 C -0.080 4.080 13 N -0.298 5.298 14 C -0.081 4.081 15 C -0.004 4.004 16 N -0.366 5.366 17 C 0.386 3.614 18 O -0.400 6.400 19 C -0.161 4.161 20 C -0.201 4.201 21 C -0.148 4.148 22 N -0.078 5.078 23 C -0.046 4.046 24 C 0.200 3.800 25 F -0.174 7.174 26 F -0.177 7.177 27 N -0.103 5.103 28 H 0.081 0.919 29 H 0.225 0.775 30 H 0.063 0.937 31 H 0.106 0.894 32 H 0.172 0.828 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.240 0.760 38 H 0.185 0.815 39 H 0.203 0.797 40 H 0.145 0.855 41 H 0.147 0.853 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.301 -32.562 -0.738 33.378 hybrid contribution -0.575 0.180 -0.822 1.019 sum -7.876 -32.381 -1.559 33.362 Atomic orbital electron populations 1.69620 1.05946 1.28058 1.50739 1.25269 0.95648 0.99755 0.97334 0.85790 0.79742 0.81078 0.77680 1.19183 1.20785 1.20747 1.19767 0.93443 0.82200 1.47404 0.87810 1.41861 1.09200 1.04599 1.64390 1.19779 0.88399 0.84698 0.84571 1.90536 1.13719 1.87025 1.55270 1.21671 0.94223 0.90787 1.01353 1.59926 1.18861 0.99425 1.51635 1.22072 0.95533 0.89337 1.01124 1.21347 0.95000 0.80303 1.03742 1.45741 1.10720 1.05525 1.74655 1.16805 0.86209 0.81685 0.76669 1.90840 1.12672 1.86721 1.49746 1.22018 0.89293 0.95554 1.09266 1.21853 1.00737 0.90153 1.07329 1.22925 0.84588 0.99705 1.07628 1.45040 1.06518 1.03480 1.52738 1.22975 0.79800 1.01136 1.00690 1.22081 0.75969 1.00187 0.81766 1.93047 1.36482 1.91469 1.96354 1.93054 1.84030 1.91853 1.48786 1.73416 1.17789 0.99288 1.19845 0.91933 0.77461 0.93698 0.89445 0.82773 0.94857 0.90386 0.89830 0.91008 0.76008 0.81479 0.79665 0.85468 0.85338 0.85440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 2 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 3 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.27 5.29 -10.97 -0.06 -14.33 16 10 C 0.44 10.38 7.82 -10.99 -0.09 10.30 16 11 O -0.58 -15.89 15.78 5.55 0.09 -15.80 16 12 C 0.05 0.90 6.17 -4.98 -0.03 0.87 16 13 N -0.67 -10.53 6.13 -115.06 -0.70 -11.24 16 14 C 0.05 0.57 5.80 -3.83 -0.02 0.55 16 15 C 0.12 1.39 5.93 -4.04 -0.02 1.37 16 16 N -0.71 -7.37 5.55 -61.29 -0.34 -7.71 16 17 C 0.60 7.33 7.83 -12.39 -0.10 7.23 16 18 O -0.53 -8.18 16.93 5.30 0.09 -8.09 16 19 C 0.00 0.00 7.13 -82.76 -0.59 -0.59 16 20 C -0.17 -1.39 10.81 -39.36 -0.43 -1.82 16 21 C -0.01 -0.04 11.40 -17.17 -0.20 -0.23 16 22 N -0.29 -1.62 3.39 -61.33 -0.21 -1.83 16 23 C 0.08 0.16 6.59 -4.04 -0.03 0.13 16 24 C 0.25 1.02 5.37 37.15 0.20 1.22 16 25 F -0.19 -0.97 17.34 2.25 0.04 -0.93 16 26 F -0.20 -1.36 17.32 2.25 0.04 -1.32 16 27 N -0.27 -2.18 11.27 33.42 0.38 -1.80 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.35 5.76 8.43 -39.29 -0.33 5.43 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.41 3.33 8.20 -40.82 -0.33 2.99 16 38 H 0.17 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.19 0.24 8.06 -52.48 -0.42 -0.18 16 40 H 0.13 0.04 8.14 -51.93 -0.42 -0.39 16 41 H 0.13 -0.05 8.04 -51.93 -0.42 -0.46 16 42 H 0.13 0.44 7.96 -51.93 -0.41 0.02 16 LS Contribution 382.04 15.07 5.76 5.76 Total: -1.00 -36.29 382.04 -5.89 -42.19 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -5.13 Total: 11.83 kcal Atomic # 6 Polarization: 12.54 SS G_CDS: -1.54 Total: 11.00 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.21 Total: -60.72 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: 0.18 Total: -23.89 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.08 Total: -2.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.29 -5.89 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130008740.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.157 kcal (2) G-P(sol) polarization free energy of solvation -36.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds