Wall clock time and date at job start Wed Apr 1 2020 03:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00359 * 2 1 4 4 H 1.48505 * 109.47195 * 269.99786 * 3 2 1 5 5 H 1.48507 * 109.47064 * 29.99175 * 3 2 1 6 6 H 1.48500 * 109.47548 * 149.99320 * 3 2 1 7 7 C 1.38800 * 119.99771 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00086 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00069 * 0.02562 * 7 2 1 10 10 C 1.81000 * 99.99954 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47140 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99840 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00379 * 180.02562 * 11 10 9 14 14 C 1.46493 * 120.00354 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47331 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47221 * 179.97438 * 15 14 13 17 17 N 1.46902 * 109.47067 * 179.97438 * 16 15 14 18 18 C 1.46903 * 110.99751 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47056 * 179.97438 * 18 17 16 20 20 N 1.30832 * 125.96850 * 270.33378 * 19 18 17 21 21 C 1.33234 * 109.83313 * 180.12247 * 20 19 18 22 22 N 1.30720 * 108.94479 * 359.58957 * 21 20 19 23 23 N 1.34430 * 125.95775 * 89.99843 * 19 18 17 24 24 C 1.46499 * 126.82421 * 0.02562 * 23 19 18 25 25 C 1.53007 * 109.47302 * 270.01340 * 24 23 19 26 26 F 1.39896 * 109.47285 * 179.97438 * 25 24 23 27 27 H 0.97002 * 119.99420 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47245 * 60.00100 * 10 9 7 29 29 H 1.08997 * 109.47255 * 299.99637 * 10 9 7 30 30 H 0.96997 * 119.99637 * 359.97438 * 13 11 10 31 31 H 1.08997 * 109.47838 * 59.99383 * 14 13 11 32 32 H 1.09005 * 109.47097 * 299.99112 * 14 13 11 33 33 H 1.08993 * 109.47146 * 59.99521 * 15 14 13 34 34 H 1.09001 * 109.46515 * 299.99183 * 15 14 13 35 35 H 1.08995 * 109.47788 * 59.99034 * 16 15 14 36 36 H 1.09005 * 109.47167 * 299.99228 * 16 15 14 37 37 H 1.00898 * 110.99643 * 303.94687 * 17 16 15 38 38 H 1.09000 * 109.47170 * 60.00112 * 18 17 16 39 39 H 1.08999 * 109.47536 * 299.99698 * 18 17 16 40 40 H 1.08002 * 125.53021 * 179.85853 * 21 20 19 41 41 H 1.09004 * 109.47163 * 30.01081 * 24 23 19 42 42 H 1.08998 * 109.47739 * 150.01394 * 24 23 19 43 43 H 1.08999 * 109.46792 * 300.00449 * 25 24 23 44 44 H 1.09000 * 109.46804 * 59.99937 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5479 1.4401 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7909 -5.5023 0.0021 13 7 2.8439 -6.3432 0.0018 14 6 2.3301 -7.7151 0.0019 15 6 3.5021 -8.6987 0.0020 16 6 2.9655 -10.1314 0.0027 17 7 4.0909 -11.0757 0.0022 18 6 3.6125 -12.4647 0.0034 19 6 4.7923 -13.4023 0.0023 20 7 5.3963 -13.8761 -1.0572 21 6 6.3957 -14.6760 -0.6880 22 7 6.4474 -14.7157 0.6176 23 7 5.4118 -13.8929 1.0898 24 6 5.0739 -13.6229 2.4895 25 6 5.8531 -12.3990 2.9753 26 9 5.5300 -12.1408 4.3117 27 1 -0.4849 0.8401 -0.0004 28 1 3.1243 -3.7315 0.8905 29 1 3.1243 -3.7315 -0.8894 30 1 3.8006 -6.1836 0.0015 31 1 1.7218 -7.8754 -0.8883 32 1 1.7212 -7.8750 0.8917 33 1 4.1107 -8.5385 0.8919 34 1 4.1107 -8.5387 -0.8881 35 1 2.3566 -10.2919 -0.8869 36 1 2.3572 -10.2912 0.8930 37 1 4.7054 -10.9054 -0.7797 38 1 3.0075 -12.6415 -0.8859 39 1 3.0092 -12.6405 0.8941 40 1 7.0588 -15.2025 -1.3585 41 1 4.0044 -13.4299 2.5743 42 1 5.3367 -14.4867 3.1000 43 1 6.9225 -12.5920 2.8903 44 1 5.5901 -11.5351 2.3649 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154802290.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:30:22 Heat of formation + Delta-G solvation = -31.170647 kcal Electronic energy + Delta-G solvation = -25934.521193 eV Core-core repulsion = 21770.077534 eV Total energy + Delta-G solvation = -4164.443659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.138 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.74958 -43.19662 -40.58178 -38.01460 -36.16867 -35.72221 -34.57608 -33.44776 -31.96676 -30.70618 -30.19392 -27.74293 -27.32181 -25.00617 -24.56384 -22.90811 -22.57556 -21.66871 -21.28047 -19.80429 -18.50404 -17.74635 -17.44341 -17.37246 -17.18121 -17.02173 -16.86919 -16.62679 -16.30897 -15.93933 -15.87635 -15.55743 -15.30814 -15.23190 -15.09558 -14.63664 -14.39227 -14.17274 -13.82118 -13.36835 -13.20389 -13.15612 -12.93864 -12.87683 -12.80004 -12.70764 -12.52970 -12.40983 -11.86290 -11.81893 -11.71711 -11.13457 -11.13245 -10.95377 -10.85569 -10.69997 -10.26539 -10.07997 -9.56346 -8.65637 -8.33905 -6.11862 0.44577 1.16381 1.28483 1.43232 1.48382 1.58735 1.63801 1.83358 2.27099 2.32115 2.88289 3.00334 3.31450 3.34960 3.38442 3.42419 3.71624 3.83874 3.96643 4.03940 4.05997 4.14151 4.17451 4.23720 4.32072 4.35152 4.44203 4.53166 4.61359 4.62198 4.73825 4.77180 4.83973 5.19652 5.20984 5.22729 5.38240 5.42821 5.49820 5.67669 5.83358 6.20695 6.22101 6.54146 7.01475 7.07548 7.27733 8.75304 Molecular weight = 345.14amu Principal moments of inertia in cm(-1) A = 0.021395 B = 0.001422 C = 0.001389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.409281 B =19691.318318 C =20151.345698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.258 1.258 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.131 4.131 11 C 0.532 3.468 12 O -0.568 6.568 13 N -0.713 5.713 14 C 0.121 3.879 15 C -0.114 4.114 16 C 0.067 3.933 17 N -0.684 5.684 18 C 0.135 3.865 19 C 0.287 3.713 20 N -0.564 5.564 21 C 0.198 3.802 22 N -0.345 5.345 23 N -0.368 5.368 24 C 0.100 3.900 25 C 0.055 3.945 26 F -0.216 7.216 27 H 0.271 0.729 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.417 0.583 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.351 0.649 38 H 0.079 0.921 39 H 0.117 0.883 40 H 0.244 0.756 41 H 0.132 0.868 42 H 0.112 0.888 43 H 0.076 0.924 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.826 -31.243 1.895 34.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.182 1.182 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.282 4.282 11 C 0.318 3.682 12 O -0.446 6.446 13 N -0.367 5.367 14 C -0.004 4.004 15 C -0.152 4.152 16 C -0.062 4.062 17 N -0.317 5.317 18 C 0.004 3.996 19 C 0.010 3.990 20 N -0.292 5.292 21 C -0.104 4.104 22 N -0.172 5.172 23 N -0.159 5.159 24 C -0.023 4.023 25 C -0.001 4.001 26 F -0.197 7.197 27 H 0.080 0.920 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.254 0.746 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.169 0.831 38 H 0.097 0.903 39 H 0.135 0.865 40 H 0.260 0.740 41 H 0.150 0.850 42 H 0.130 0.870 43 H 0.094 0.906 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.198 -31.836 2.780 34.575 hybrid contribution 1.561 1.233 -0.798 2.144 sum 14.760 -30.603 1.982 34.034 Atomic orbital electron populations 1.70186 1.07966 1.28590 1.48005 1.26122 0.95961 1.03302 0.93738 0.84955 0.78201 0.76046 0.78783 1.19320 1.20326 1.18209 1.23217 0.95372 0.92043 1.58868 0.89887 1.85568 1.10688 0.99271 1.97055 1.23384 1.03496 0.94503 1.06800 1.20051 0.86255 0.86749 0.75171 1.90691 1.17485 1.86153 1.50293 1.45741 1.10300 1.05289 1.75371 1.21336 0.97330 0.79883 1.01805 1.21594 0.96616 0.92700 1.04305 1.21815 0.91980 0.90030 1.02357 1.60448 1.19370 1.00875 1.51031 1.20503 0.88930 0.85098 1.05041 1.24587 0.96385 0.95750 0.82293 1.70529 1.11763 1.16883 1.30068 1.26577 0.96246 0.96473 0.91110 1.78073 1.09072 1.16314 1.13760 1.50196 1.23133 1.34792 1.07791 1.22452 1.02882 0.99986 0.76950 1.22261 1.00679 0.99040 0.78149 1.92791 1.94588 1.95323 1.37021 0.92004 0.87224 0.87209 0.74645 0.92453 0.92189 0.89676 0.90230 0.93668 0.89422 0.83101 0.90330 0.86518 0.74047 0.85009 0.87017 0.90588 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 2 C 0.01 0.77 5.49 84.86 0.47 1.23 16 3 Si 1.00 43.30 29.55 68.60 2.03 45.33 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.55 -31.07 9.50 67.95 0.65 -30.42 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.43 20.57 -56.49 -1.16 -9.60 16 10 C -0.13 -5.04 6.16 71.24 0.44 -4.60 16 11 C 0.53 18.89 7.85 87.66 0.69 19.58 16 12 O -0.57 -25.73 15.86 -3.04 -0.05 -25.78 16 13 N -0.71 -16.16 5.56 -463.07 -2.57 -18.73 16 14 C 0.12 2.18 5.67 86.38 0.49 2.67 16 15 C -0.11 -1.07 5.59 30.59 0.17 -0.90 16 16 C 0.07 0.47 5.69 86.30 0.49 0.97 16 17 N -0.68 -4.60 6.49 -517.92 -3.36 -7.96 16 18 C 0.14 0.88 6.01 85.56 0.51 1.39 16 19 C 0.29 3.43 7.50 138.23 1.04 4.46 16 20 N -0.56 -8.81 11.19 -191.78 -2.15 -10.96 16 21 C 0.20 2.76 13.03 180.77 2.36 5.12 16 22 N -0.34 -5.48 12.70 -61.24 -0.78 -6.26 16 23 N -0.37 -4.44 3.64 -338.48 -1.23 -5.67 16 24 C 0.10 0.70 6.76 86.38 0.58 1.29 16 25 C 0.05 0.48 7.88 71.98 0.57 1.05 16 26 F -0.22 -2.88 17.36 44.97 0.78 -2.10 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 29 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 30 H 0.42 6.54 8.47 -92.71 -0.79 5.75 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.35 2.74 8.72 -89.70 -0.78 1.96 16 38 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.12 0.30 7.13 -2.39 -0.02 0.28 16 40 H 0.24 1.63 8.06 -2.91 -0.02 1.60 16 41 H 0.13 0.32 7.11 -2.39 -0.02 0.30 16 42 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -82.64 397.87 -0.29 -82.93 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -0.53 Total: 12.43 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: 8.45 Total: 1.83 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -9.80 Total: -105.05 kcal Atomic # 8 Polarization: -25.73 SS G_CDS: -0.05 Total: -25.78 kcal Atomic # 9 Polarization: -2.88 SS G_CDS: 0.78 Total: -2.10 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.33 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.64 -0.29 -82.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154802290.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.763 kcal (2) G-P(sol) polarization free energy of solvation -82.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds