Wall clock time and date at job start Wed Apr 1 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00169 * 2 1 4 4 H 1.48499 * 109.47348 * 270.00200 * 3 2 1 5 5 H 1.48500 * 109.47102 * 30.00252 * 3 2 1 6 6 H 1.48500 * 109.47113 * 150.00147 * 3 2 1 7 7 C 1.37875 * 119.99473 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00810 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99815 * 179.97438 * 7 2 1 10 10 O 1.42106 * 106.39924 * 66.45844 * 9 7 2 11 11 O 1.42100 * 106.40378 * 293.54182 * 9 7 2 12 12 N 1.65601 * 107.22095 * 179.97438 * 9 7 2 13 13 C 1.47322 * 125.92959 * 97.64253 * 12 9 7 14 14 C 1.54440 * 107.17870 * 178.76490 * 13 12 9 15 15 C 1.55830 * 102.74447 * 337.35936 * 14 13 12 16 16 H 1.09010 * 112.69719 * 157.11606 * 15 14 13 17 17 O 1.42828 * 106.63980 * 280.85959 * 15 14 13 18 18 C 1.42554 * 115.62167 * 164.34940 * 17 15 14 19 19 H 1.09004 * 109.61370 * 57.04805 * 18 17 15 20 20 C 1.52993 * 109.61186 * 177.57443 * 18 17 15 21 21 O 1.42906 * 109.47261 * 294.99857 * 20 18 17 22 22 C 1.42905 * 113.99906 * 180.02562 * 21 20 18 23 23 C 1.52994 * 109.46905 * 180.02562 * 22 21 20 24 24 C 1.53007 * 117.49872 * 243.74725 * 23 22 21 25 25 C 1.53002 * 117.49723 * 175.08940 * 23 22 21 26 26 C 1.53333 * 108.60085 * 297.30976 * 18 17 15 27 27 C 1.53063 * 108.17699 * 60.75688 * 26 18 17 28 28 C 1.46633 * 125.93296 * 277.64456 * 12 9 7 29 29 H 1.09007 * 109.09587 * 88.10505 * 28 12 9 30 30 H 0.97005 * 119.99994 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.89755 * 59.37306 * 13 12 9 32 32 H 1.09000 * 110.04243 * 298.23348 * 13 12 9 33 33 H 1.08996 * 110.75316 * 219.04844 * 14 13 12 34 34 H 1.08998 * 110.75884 * 95.67630 * 14 13 12 35 35 H 1.09002 * 109.47552 * 55.00279 * 20 18 17 36 36 H 1.09008 * 109.47200 * 175.00216 * 20 18 17 37 37 H 1.08998 * 109.47187 * 300.00722 * 22 21 20 38 38 H 1.09002 * 109.47037 * 60.00147 * 22 21 20 39 39 H 1.08994 * 115.55220 * 29.42105 * 23 22 21 40 40 H 1.08996 * 117.49554 * 359.97438 * 24 23 22 41 41 H 1.08999 * 117.50010 * 145.02260 * 24 23 22 42 42 H 1.08999 * 117.50086 * 214.97864 * 25 23 22 43 43 H 1.08997 * 117.50294 * 359.97438 * 25 23 22 44 44 H 1.08991 * 109.72098 * 301.08226 * 26 18 17 45 45 H 1.08997 * 109.75665 * 180.44828 * 26 18 17 46 46 H 1.08994 * 109.26310 * 183.00642 * 27 26 18 47 47 H 1.09007 * 109.23212 * 63.54465 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7664 -1.1942 -0.0012 10 8 4.1682 -0.6500 1.2485 11 8 4.1673 -0.6495 -1.2510 12 7 4.2566 -2.7760 -0.0011 13 6 4.6636 -3.5550 -1.1834 14 6 5.0636 -4.9618 -0.6871 15 6 5.4111 -4.7118 0.8112 16 1 5.3325 -5.6143 1.4175 17 8 6.7247 -4.1516 0.8385 18 6 7.1041 -3.5292 2.0636 19 1 7.0173 -4.2458 2.8803 20 6 8.5479 -3.0332 1.9620 21 8 9.4267 -4.1511 1.8197 22 6 10.8070 -3.7959 1.7165 23 6 11.6502 -5.0639 1.5682 24 6 12.6460 -5.3846 2.6847 25 6 13.1510 -4.8900 1.3269 26 6 6.1686 -2.3415 2.3190 27 6 4.7380 -2.8751 2.4269 28 6 4.3609 -3.6444 1.1758 29 1 3.4009 -4.1321 1.3454 30 1 -0.4850 0.8401 0.0004 31 1 5.5147 -3.0766 -1.6679 32 1 3.8326 -3.6315 -1.8845 33 1 5.9347 -5.3294 -1.2295 34 1 4.2284 -5.6560 -0.7794 35 1 8.6476 -2.3800 1.0951 36 1 8.8066 -2.4804 2.8652 37 1 10.9539 -3.1582 0.8448 38 1 11.1122 -3.2591 2.6147 39 1 11.1556 -5.9027 1.0786 40 1 12.7007 -4.6921 3.5245 41 1 12.8068 -6.4346 2.9293 42 1 13.6439 -5.6147 0.6789 43 1 13.5376 -3.8723 1.2734 44 1 6.2363 -1.6353 1.4916 45 1 6.4475 -1.8461 3.2490 46 1 4.0510 -2.0388 2.5555 47 1 4.6655 -3.5359 3.2908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:18 Heat of formation + Delta-G solvation = -134.389009 kcal Electronic energy + Delta-G solvation = -29989.767997 eV Core-core repulsion = 25879.723257 eV Total energy + Delta-G solvation = -4110.044741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.04805 -38.53494 -36.90939 -35.84199 -35.63791 -34.48631 -33.34846 -33.02999 -30.39469 -29.52452 -27.57763 -26.40797 -25.84625 -23.25292 -22.69780 -22.20155 -21.27746 -20.80191 -20.06090 -18.44046 -17.38137 -16.93382 -16.83906 -16.44135 -16.11435 -15.75303 -15.47382 -15.16474 -14.69539 -14.60535 -14.29092 -14.00619 -13.61799 -13.45759 -13.33889 -12.93418 -12.70812 -12.61234 -12.42872 -12.17187 -11.85677 -11.76471 -11.49879 -11.39802 -11.37319 -11.28549 -11.15569 -10.86677 -10.77621 -10.73729 -10.53211 -10.48335 -10.43118 -10.28905 -10.03458 -9.72315 -9.59000 -9.23739 -9.13609 -8.97252 -8.12945 -6.81873 -5.35195 1.98584 3.04964 3.15724 3.24005 3.27918 3.62562 3.76729 3.93094 4.18706 4.50525 4.55699 4.59396 4.69328 4.76296 4.91070 5.03334 5.04459 5.14621 5.16400 5.23560 5.30767 5.32736 5.35378 5.41189 5.43164 5.47867 5.53184 5.56632 5.60907 5.77167 5.77981 5.79639 5.90599 5.91855 5.95848 6.08076 6.15676 6.21631 6.32412 6.38890 6.57393 6.79834 6.92698 7.12889 7.28232 7.47947 7.54638 8.21077 8.69101 10.30655 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.002967 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.169101 B = 9434.613028 C = 9878.095464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.152 3.848 3 Si 0.801 3.199 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.218 1.218 7 C -1.016 5.016 8 H 0.120 0.880 9 S 2.693 3.307 10 O -0.998 6.998 11 O -1.008 7.008 12 N -1.000 6.000 13 C 0.130 3.870 14 C -0.122 4.122 15 C 0.083 3.917 16 H 0.085 0.915 17 O -0.363 6.363 18 C 0.093 3.907 19 H 0.063 0.937 20 C 0.071 3.929 21 O -0.377 6.377 22 C 0.092 3.908 23 C -0.150 4.150 24 C -0.179 4.179 25 C -0.176 4.176 26 C -0.133 4.133 27 C -0.151 4.151 28 C 0.131 3.869 29 H 0.072 0.928 30 H 0.280 0.720 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.114 0.886 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.119 0.881 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.845 -10.650 4.919 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.171 1.171 5 H -0.179 1.179 6 H -0.140 1.140 7 C -1.151 5.151 8 H 0.138 0.862 9 S 2.797 3.203 10 O -0.988 6.988 11 O -0.998 6.998 12 N -0.836 5.836 13 C 0.004 3.996 14 C -0.161 4.161 15 C 0.024 3.976 16 H 0.102 0.898 17 O -0.283 6.283 18 C 0.036 3.964 19 H 0.081 0.919 20 C -0.005 4.005 21 O -0.296 6.296 22 C 0.015 3.985 23 C -0.168 4.168 24 C -0.216 4.216 25 C -0.213 4.213 26 C -0.171 4.171 27 C -0.189 4.189 28 C 0.023 3.977 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.132 0.868 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.137 0.863 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 18.284 -9.928 4.735 21.337 hybrid contribution -0.677 0.739 0.172 1.017 sum 17.607 -9.189 4.907 20.457 Atomic orbital electron populations 1.69993 1.06590 1.29008 1.39678 1.24434 0.94785 0.98787 0.88676 0.87882 0.83665 0.84548 0.81854 1.17128 1.17933 1.13953 1.30561 1.15847 1.02074 1.66587 0.86216 1.00943 0.76947 0.69275 0.73161 1.93407 1.85117 1.75740 1.44548 1.93396 1.85434 1.75522 1.45480 1.58385 1.83221 1.29907 1.12124 1.21546 0.99431 0.90767 0.87826 1.22863 1.01652 0.97079 0.94465 1.23395 0.82621 0.94421 0.97188 0.89762 1.87779 1.30761 1.75045 1.34670 1.22118 0.91812 0.94710 0.87799 0.91921 1.22549 0.88416 0.88774 1.00788 1.87923 1.15393 1.31804 1.94526 1.21972 0.81808 0.94911 0.99808 1.22142 0.90734 1.00137 1.03796 1.23079 1.03874 1.02240 0.92390 1.22982 0.95716 1.02747 0.99845 1.22026 0.94655 0.97149 1.03291 1.21942 0.98777 1.02266 0.95895 1.21343 0.98497 0.91493 0.86356 0.91018 0.90921 0.91688 0.91730 0.89538 0.89687 0.92337 0.91924 0.92915 0.93447 0.86760 0.88748 0.88666 0.88438 0.88706 0.90347 0.90876 0.86301 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.81 13.96 55.43 0.77 -23.04 16 2 C 0.15 4.38 5.47 -17.82 -0.10 4.28 16 3 Si 0.80 20.48 26.54 -169.99 -4.51 15.97 16 4 H -0.25 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.26 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.22 -5.56 5.61 56.52 0.32 -5.24 16 7 C -1.02 -28.37 10.29 30.60 0.31 -28.06 16 8 H 0.12 3.40 8.06 -52.49 -0.42 2.98 16 9 S 2.69 67.12 4.27 -107.50 -0.46 66.66 16 10 O -1.00 -24.95 10.68 -57.17 -0.61 -25.56 16 11 O -1.01 -27.41 16.35 -57.17 -0.93 -28.34 16 12 N -1.00 -20.00 3.48 -105.89 -0.37 -20.37 16 13 C 0.13 2.23 6.85 -2.84 -0.02 2.21 16 14 C -0.12 -1.61 6.54 -24.47 -0.16 -1.77 16 15 C 0.08 1.17 4.10 -24.64 -0.10 1.07 16 16 H 0.08 0.99 8.14 -51.92 -0.42 0.56 16 17 O -0.36 -5.70 9.66 -40.01 -0.39 -6.09 16 18 C 0.09 1.33 2.92 -26.56 -0.08 1.25 16 19 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 20 C 0.07 0.92 5.62 37.15 0.21 1.12 16 21 O -0.38 -4.97 10.31 -40.01 -0.41 -5.39 16 22 C 0.09 0.94 6.22 37.15 0.23 1.17 16 23 C -0.15 -1.37 6.05 -90.62 -0.55 -1.92 16 24 C -0.18 -1.35 10.18 -26.69 -0.27 -1.62 16 25 C -0.18 -1.27 10.25 -26.69 -0.27 -1.54 16 26 C -0.13 -2.13 4.93 -26.53 -0.13 -2.26 16 27 C -0.15 -2.51 4.89 -27.39 -0.13 -2.64 16 28 C 0.13 2.19 3.14 -67.97 -0.21 1.97 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.09 1.04 8.13 -51.93 -0.42 0.62 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 37 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.05 0.43 7.88 -51.93 -0.41 0.02 16 39 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 0.66 8.03 -51.93 -0.42 0.25 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.47 6.78 -51.93 -0.35 1.12 16 45 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 46 H 0.12 2.34 5.56 -51.93 -0.29 2.05 16 47 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 377.37 15.07 5.69 5.69 Total: -1.00 -32.82 377.37 -10.37 -43.19 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.87 Total: 4.01 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -1.27 Total: -26.73 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.41 Total: -43.41 kcal Atomic # 8 Polarization: -63.03 SS G_CDS: -2.34 Total: -65.38 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.51 Total: 15.97 kcal Atomic # 16 Polarization: 67.12 SS G_CDS: -0.46 Total: 66.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.82 -10.37 -43.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.201 kcal (2) G-P(sol) polarization free energy of solvation -32.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds