Wall clock time and date at job start Wed Apr 1 2020 03:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86792 * 120.00169 * 2 1 4 4 H 1.48499 * 109.47348 * 270.00200 * 3 2 1 5 5 H 1.48500 * 109.47102 * 30.00252 * 3 2 1 6 6 H 1.48500 * 109.47113 * 150.00147 * 3 2 1 7 7 C 1.37875 * 119.99473 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00810 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99815 * 179.97438 * 7 2 1 10 10 O 1.42106 * 106.39924 * 66.45844 * 9 7 2 11 11 O 1.42100 * 106.40378 * 293.54182 * 9 7 2 12 12 N 1.65601 * 107.22095 * 179.97438 * 9 7 2 13 13 C 1.47322 * 125.92959 * 97.64253 * 12 9 7 14 14 C 1.54440 * 107.17870 * 178.76490 * 13 12 9 15 15 C 1.55830 * 102.74447 * 337.35936 * 14 13 12 16 16 H 1.09010 * 112.69719 * 157.11606 * 15 14 13 17 17 O 1.42828 * 106.63980 * 280.85959 * 15 14 13 18 18 C 1.42554 * 115.62167 * 164.34940 * 17 15 14 19 19 H 1.09004 * 109.61370 * 57.04805 * 18 17 15 20 20 C 1.52993 * 109.61186 * 177.57443 * 18 17 15 21 21 O 1.42906 * 109.47261 * 294.99857 * 20 18 17 22 22 C 1.42905 * 113.99906 * 180.02562 * 21 20 18 23 23 C 1.52994 * 109.46905 * 180.02562 * 22 21 20 24 24 C 1.53007 * 117.49872 * 243.74725 * 23 22 21 25 25 C 1.53002 * 117.49723 * 175.08940 * 23 22 21 26 26 C 1.53333 * 108.60085 * 297.30976 * 18 17 15 27 27 C 1.53063 * 108.17699 * 60.75688 * 26 18 17 28 28 C 1.46633 * 125.93296 * 277.64456 * 12 9 7 29 29 H 1.09007 * 109.09587 * 88.10505 * 28 12 9 30 30 H 0.97005 * 119.99994 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.89755 * 59.37306 * 13 12 9 32 32 H 1.09000 * 110.04243 * 298.23348 * 13 12 9 33 33 H 1.08996 * 110.75316 * 219.04844 * 14 13 12 34 34 H 1.08998 * 110.75884 * 95.67630 * 14 13 12 35 35 H 1.09002 * 109.47552 * 55.00279 * 20 18 17 36 36 H 1.09008 * 109.47200 * 175.00216 * 20 18 17 37 37 H 1.08998 * 109.47187 * 300.00722 * 22 21 20 38 38 H 1.09002 * 109.47037 * 60.00147 * 22 21 20 39 39 H 1.08994 * 115.55220 * 29.42105 * 23 22 21 40 40 H 1.08996 * 117.49554 * 359.97438 * 24 23 22 41 41 H 1.08999 * 117.50010 * 145.02260 * 24 23 22 42 42 H 1.08999 * 117.50086 * 214.97864 * 25 23 22 43 43 H 1.08997 * 117.50294 * 359.97438 * 25 23 22 44 44 H 1.08991 * 109.72098 * 301.08226 * 26 18 17 45 45 H 1.08997 * 109.75665 * 180.44828 * 26 18 17 46 46 H 1.08994 * 109.26310 * 183.00642 * 27 26 18 47 47 H 1.09007 * 109.23212 * 63.54465 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7664 -1.1942 -0.0012 10 8 4.1682 -0.6500 1.2485 11 8 4.1673 -0.6495 -1.2510 12 7 4.2566 -2.7760 -0.0011 13 6 4.6636 -3.5550 -1.1834 14 6 5.0636 -4.9618 -0.6871 15 6 5.4111 -4.7118 0.8112 16 1 5.3325 -5.6143 1.4175 17 8 6.7247 -4.1516 0.8385 18 6 7.1041 -3.5292 2.0636 19 1 7.0173 -4.2458 2.8803 20 6 8.5479 -3.0332 1.9620 21 8 9.4267 -4.1511 1.8197 22 6 10.8070 -3.7959 1.7165 23 6 11.6502 -5.0639 1.5682 24 6 12.6460 -5.3846 2.6847 25 6 13.1510 -4.8900 1.3269 26 6 6.1686 -2.3415 2.3190 27 6 4.7380 -2.8751 2.4269 28 6 4.3609 -3.6444 1.1758 29 1 3.4009 -4.1321 1.3454 30 1 -0.4850 0.8401 0.0004 31 1 5.5147 -3.0766 -1.6679 32 1 3.8326 -3.6315 -1.8845 33 1 5.9347 -5.3294 -1.2295 34 1 4.2284 -5.6560 -0.7794 35 1 8.6476 -2.3800 1.0951 36 1 8.8066 -2.4804 2.8652 37 1 10.9539 -3.1582 0.8448 38 1 11.1122 -3.2591 2.6147 39 1 11.1556 -5.9027 1.0786 40 1 12.7007 -4.6921 3.5245 41 1 12.8068 -6.4346 2.9293 42 1 13.6439 -5.6147 0.6789 43 1 13.5376 -3.8723 1.2734 44 1 6.2363 -1.6353 1.4916 45 1 6.4475 -1.8461 3.2490 46 1 4.0510 -2.0388 2.5555 47 1 4.6655 -3.5359 3.2908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952214.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:17 Heat of formation + Delta-G solvation = -157.557674 kcal Electronic energy + Delta-G solvation = -29990.772666 eV Core-core repulsion = 25879.723257 eV Total energy + Delta-G solvation = -4111.049409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.25177 -39.36678 -37.83423 -37.74657 -36.79074 -36.51196 -35.22125 -34.58227 -31.59166 -30.79940 -28.63115 -28.46558 -26.87486 -24.49405 -23.41286 -23.22738 -22.45417 -21.60976 -21.37075 -20.38470 -19.20376 -18.43114 -17.88916 -17.71855 -17.39287 -17.03022 -16.63582 -16.44534 -16.18075 -15.80499 -15.54464 -15.41308 -15.11662 -14.99175 -14.82429 -14.59479 -13.89259 -13.80036 -13.52387 -13.46392 -13.44137 -13.20714 -12.88997 -12.83273 -12.68704 -12.53896 -12.44327 -12.38087 -12.36817 -12.01799 -11.81394 -11.69817 -11.55886 -11.38351 -11.31546 -11.19014 -11.15568 -11.07230 -10.43868 -10.28399 -9.66535 -8.99896 -7.55193 0.08230 1.01039 1.10290 1.17619 1.85416 2.38293 2.45835 2.49288 2.70232 2.95739 3.35899 3.53350 3.61712 3.79361 3.93323 3.98290 3.99915 4.03337 4.11914 4.21194 4.24432 4.28902 4.32124 4.35240 4.42578 4.50161 4.56573 4.60353 4.67747 4.72818 4.78856 4.81169 4.85827 4.91385 5.02464 5.02955 5.11580 5.15718 5.22595 5.25354 5.26145 5.33706 5.42695 5.54803 5.78034 5.98626 6.24050 6.45700 6.50337 8.18044 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.021140 B = 0.002967 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.169101 B = 9434.613028 C = 9878.095464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.108 3.892 3 Si 0.824 3.176 4 H -0.246 1.246 5 H -0.218 1.218 6 H -0.222 1.222 7 C -1.038 5.038 8 H 0.101 0.899 9 S 2.713 3.287 10 O -1.003 7.003 11 O -1.036 7.036 12 N -1.004 6.004 13 C 0.115 3.885 14 C -0.109 4.109 15 C 0.089 3.911 16 H 0.124 0.876 17 O -0.381 6.381 18 C 0.097 3.903 19 H 0.083 0.917 20 C 0.072 3.928 21 O -0.393 6.393 22 C 0.088 3.912 23 C -0.170 4.170 24 C -0.174 4.174 25 C -0.167 4.167 26 C -0.134 4.134 27 C -0.156 4.156 28 C 0.116 3.884 29 H 0.082 0.918 30 H 0.291 0.709 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.113 0.887 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.060 0.940 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.102 0.898 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.721 -12.149 6.075 23.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.109 4.109 3 Si 0.641 3.359 4 H -0.169 1.169 5 H -0.140 1.140 6 H -0.144 1.144 7 C -1.171 5.171 8 H 0.119 0.881 9 S 2.815 3.185 10 O -0.993 6.993 11 O -1.027 7.027 12 N -0.843 5.843 13 C -0.010 4.010 14 C -0.148 4.148 15 C 0.030 3.970 16 H 0.141 0.859 17 O -0.301 6.301 18 C 0.039 3.961 19 H 0.101 0.899 20 C -0.005 4.005 21 O -0.313 6.313 22 C 0.012 3.988 23 C -0.188 4.188 24 C -0.211 4.211 25 C -0.204 4.204 26 C -0.172 4.172 27 C -0.194 4.194 28 C 0.010 3.990 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.062 0.938 36 H 0.102 0.898 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.120 0.880 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 20.126 -11.412 5.896 23.876 hybrid contribution -1.236 1.107 -0.185 1.670 sum 18.890 -10.304 5.711 22.263 Atomic orbital electron populations 1.70017 1.07458 1.30451 1.40535 1.25172 0.95636 1.01439 0.88625 0.87507 0.83239 0.82794 0.82377 1.16934 1.14001 1.14421 1.31099 1.18362 1.01399 1.66206 0.88077 1.00133 0.75389 0.70618 0.72367 1.93409 1.84518 1.77056 1.44289 1.93348 1.85236 1.77288 1.46791 1.58039 1.82535 1.29071 1.14640 1.21850 0.99064 0.92905 0.87140 1.22901 1.03282 0.94661 0.93908 1.23581 0.81030 0.94321 0.98102 0.85916 1.87773 1.31333 1.75261 1.35691 1.22146 0.91901 0.94084 0.87941 0.89875 1.22535 0.88049 0.88680 1.01227 1.87885 1.16649 1.32090 1.94666 1.22125 0.80661 0.95699 1.00347 1.22109 0.91587 0.99477 1.05640 1.23168 1.02506 1.02933 0.92473 1.23082 0.94024 1.03491 0.99755 1.22009 0.95045 0.97469 1.02679 1.21947 0.98227 1.01820 0.97373 1.21746 1.00336 0.91757 0.85175 0.89998 0.89849 0.92764 0.91807 0.87918 0.86894 0.93770 0.89788 0.93149 0.92138 0.87919 0.88155 0.87909 0.87485 0.87959 0.93893 0.89289 0.89885 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.18 13.96 21.45 0.30 -49.88 16 2 C 0.11 6.30 5.47 84.65 0.46 6.76 16 3 Si 0.82 41.65 26.54 68.60 1.82 43.47 16 4 H -0.25 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.22 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.22 -11.32 5.61 99.48 0.56 -10.77 16 7 C -1.04 -59.69 10.29 67.73 0.70 -59.00 16 8 H 0.10 5.99 8.06 -2.91 -0.02 5.96 16 9 S 2.71 138.16 4.27 -56.49 -0.24 137.92 16 10 O -1.00 -51.14 10.68 -128.00 -1.37 -52.51 16 11 O -1.04 -57.71 16.35 -128.00 -2.09 -59.80 16 12 N -1.00 -40.20 3.48 -488.92 -1.70 -41.90 16 13 C 0.12 3.90 6.85 86.71 0.59 4.49 16 14 C -0.11 -2.58 6.54 32.06 0.21 -2.37 16 15 C 0.09 2.23 4.10 31.95 0.13 2.36 16 16 H 0.12 2.25 8.14 -2.38 -0.02 2.23 16 17 O -0.38 -11.12 9.66 -144.41 -1.39 -12.52 16 18 C 0.10 2.55 2.92 30.70 0.09 2.64 16 19 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 20 C 0.07 1.73 5.62 71.98 0.40 2.14 16 21 O -0.39 -9.73 10.31 -144.41 -1.49 -11.22 16 22 C 0.09 1.69 6.22 71.98 0.45 2.13 16 23 C -0.17 -2.87 6.05 -10.79 -0.07 -2.93 16 24 C -0.17 -2.25 10.18 30.62 0.31 -1.94 16 25 C -0.17 -2.06 10.25 30.62 0.31 -1.75 16 26 C -0.13 -4.15 4.93 30.73 0.15 -4.00 16 27 C -0.16 -4.99 4.89 30.17 0.15 -4.84 16 28 C 0.12 3.72 3.14 44.90 0.14 3.86 16 29 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.29 15.37 8.31 -92.70 -0.77 14.60 16 31 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.10 2.15 8.13 -2.39 -0.02 2.13 16 34 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 0.98 7.88 -2.39 -0.02 0.96 16 39 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.10 1.17 8.03 -2.39 -0.02 1.15 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.04 1.62 6.78 -2.39 -0.02 1.61 16 45 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.08 3.29 5.56 -2.39 -0.01 3.28 16 47 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 Total: -1.00 -72.76 377.37 -1.33 -74.09 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.80 Total: 24.78 kcal Atomic # 6 Polarization: -56.46 SS G_CDS: 4.04 Total: -52.43 kcal Atomic # 7 Polarization: -90.38 SS G_CDS: -1.40 Total: -91.78 kcal Atomic # 8 Polarization: -129.70 SS G_CDS: -6.34 Total: -136.04 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.82 Total: 43.47 kcal Atomic # 16 Polarization: 138.16 SS G_CDS: -0.24 Total: 137.92 kcal Total: -72.76 -1.33 -74.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952214.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.470 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds