Wall clock time and date at job start Wed Apr 1 2020 02:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00209 * 2 1 4 4 H 1.48491 * 109.47104 * 270.00161 * 3 2 1 5 5 H 1.48508 * 109.46726 * 29.99797 * 3 2 1 6 6 H 1.48497 * 109.47325 * 149.99589 * 3 2 1 7 7 C 1.37876 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00227 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00032 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40223 * 66.45988 * 9 7 2 11 11 O 1.42097 * 106.40146 * 293.54134 * 9 7 2 12 12 N 1.65604 * 107.21895 * 180.02562 * 9 7 2 13 13 C 1.46930 * 120.59611 * 89.99926 * 12 9 7 14 14 C 1.53238 * 108.74768 * 126.11496 * 13 12 9 15 15 C 1.52817 * 109.32811 * 54.20149 * 14 13 12 16 16 C 1.53958 * 109.67859 * 178.48296 * 15 14 13 17 17 C 1.54860 * 104.06759 * 242.61708 * 16 15 14 18 18 H 1.09005 * 110.90661 * 262.58607 * 17 16 15 19 19 O 1.42901 * 110.90568 * 139.02778 * 17 16 15 20 20 C 1.42895 * 114.00313 * 152.92220 * 19 17 16 21 21 C 1.53003 * 109.47298 * 180.02562 * 20 19 17 22 22 C 1.53001 * 117.51964 * 116.28202 * 21 20 19 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 20 24 24 C 1.55004 * 102.13448 * 20.80795 * 17 16 15 25 25 O 1.43520 * 109.82927 * 60.50033 * 15 14 13 26 26 C 1.52803 * 110.24283 * 299.32308 * 15 14 13 27 27 C 1.46920 * 120.59888 * 270.02197 * 12 9 7 28 28 H 0.97005 * 119.99984 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.59247 * 6.33821 * 13 12 9 30 30 H 1.09003 * 109.70964 * 245.96100 * 13 12 9 31 31 H 1.09003 * 109.49553 * 294.24374 * 14 13 12 32 32 H 1.09000 * 109.51686 * 174.17209 * 14 13 12 33 33 H 1.08999 * 110.53350 * 123.96433 * 16 15 14 34 34 H 1.09005 * 110.49959 * 1.25218 * 16 15 14 35 35 H 1.08999 * 109.47440 * 59.99511 * 20 19 17 36 36 H 1.09005 * 109.46905 * 299.99670 * 20 19 17 37 37 H 1.09002 * 115.54973 * 330.57985 * 21 20 19 38 38 H 1.09001 * 117.49733 * 214.97413 * 22 21 20 39 39 H 1.08995 * 117.49577 * 359.97438 * 22 21 20 40 40 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 41 41 H 1.09004 * 117.51638 * 107.47550 * 23 22 21 42 42 H 1.09007 * 110.61558 * 81.64014 * 24 17 16 43 43 H 1.09002 * 110.61102 * 204.45728 * 24 17 16 44 44 H 1.08991 * 109.49822 * 180.62070 * 26 15 14 45 45 H 1.09010 * 109.49454 * 300.70632 * 26 15 14 46 46 H 1.09003 * 109.58895 * 353.65705 * 27 12 9 47 47 H 1.08996 * 109.58614 * 113.94642 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1673 -0.6494 1.2510 11 8 4.1682 -0.6499 -1.2484 12 7 4.2567 -2.7759 0.0011 13 6 4.4785 -3.4900 -1.2638 14 6 5.8903 -4.0856 -1.2520 15 6 6.0677 -4.9417 0.0014 16 6 7.4710 -5.5750 0.0024 17 6 7.1965 -7.0982 -0.0513 18 1 7.2414 -7.5369 0.9456 19 8 8.1114 -7.7503 -0.9343 20 6 8.3554 -9.1205 -0.6103 21 6 9.3443 -9.7141 -1.6157 22 6 10.6992 -10.1832 -1.0818 23 6 9.6482 -11.2098 -1.5087 24 6 5.7531 -7.1495 -0.6138 25 8 5.1105 -6.0110 0.0001 26 6 5.8888 -4.0867 1.2552 27 6 4.4771 -3.4907 1.2656 28 1 -0.4850 0.8401 -0.0004 29 1 4.3822 -2.7948 -2.0977 30 1 3.7453 -4.2898 -1.3679 31 1 6.6249 -3.2803 -1.2495 32 1 6.0319 -4.7044 -2.1381 33 1 8.0069 -5.3156 0.9154 34 1 8.0338 -5.2573 -0.8753 35 1 7.4183 -9.6758 -0.6506 36 1 8.7745 -9.1874 0.3937 37 1 9.3209 -9.2753 -2.6132 38 1 11.5672 -10.0529 -1.7281 39 1 10.8865 -10.0685 -0.0142 40 1 9.1439 -11.7709 -0.7219 41 1 9.8244 -11.7551 -2.4360 42 1 5.7602 -7.0471 -1.6990 43 1 5.2596 -8.0761 -0.3204 44 1 6.0285 -4.7063 2.1410 45 1 6.6236 -3.2815 1.2544 46 1 4.3799 -2.7959 2.0999 47 1 3.7418 -4.2889 1.3671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192952353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:47 Heat of formation + Delta-G solvation = -141.301004 kcal Electronic energy + Delta-G solvation = -29268.610491 eV Core-core repulsion = 25158.266024 eV Total energy + Delta-G solvation = -4110.344467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.52698 -38.62321 -37.06132 -36.03450 -35.66596 -34.38548 -32.97869 -32.21166 -30.85975 -30.53977 -27.23648 -26.44076 -26.31728 -23.30262 -22.84277 -22.72147 -21.52519 -20.93185 -19.85412 -18.68177 -17.56345 -17.43880 -16.77172 -16.27523 -15.84861 -15.52348 -15.31333 -15.12412 -15.08626 -14.56466 -14.41817 -14.11586 -13.60824 -13.51487 -13.44852 -13.26721 -12.95610 -12.72294 -12.71332 -12.31053 -12.00379 -11.85808 -11.72008 -11.57871 -11.46493 -11.33962 -11.19739 -10.98759 -10.89043 -10.85578 -10.78701 -10.59898 -10.51615 -10.36633 -10.14431 -9.79526 -9.73816 -9.45622 -9.16991 -9.06226 -8.17115 -6.75814 -5.28357 2.07040 2.98749 3.09516 3.20257 3.29295 3.39691 3.87643 3.98482 4.21204 4.28151 4.34563 4.43552 4.52832 4.59760 4.63160 4.67112 4.83934 4.85910 4.99547 5.03481 5.05821 5.17623 5.21456 5.36656 5.42041 5.42777 5.47337 5.50951 5.60218 5.64066 5.64483 5.67807 5.69295 5.76486 5.79997 5.90549 5.98578 6.09244 6.15935 6.29420 6.40426 6.51693 6.77720 6.80085 6.99889 7.45521 7.53501 8.28627 8.75640 10.36788 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.036727 B = 0.002298 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.201455 B =12179.471182 C =12288.974590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.151 3.849 3 Si 0.801 3.199 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.014 5.014 8 H 0.121 0.879 9 S 2.676 3.324 10 O -1.008 7.008 11 O -1.010 7.010 12 N -1.000 6.000 13 C 0.129 3.871 14 C -0.142 4.142 15 C 0.111 3.889 16 C -0.144 4.144 17 C 0.057 3.943 18 H 0.077 0.923 19 O -0.370 6.370 20 C 0.091 3.909 21 C -0.154 4.154 22 C -0.178 4.178 23 C -0.174 4.174 24 C 0.026 3.974 25 O -0.350 6.350 26 C -0.123 4.123 27 C 0.127 3.873 28 H 0.280 0.720 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.079 0.921 46 H 0.093 0.907 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.121 -19.995 -0.473 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.068 4.068 3 Si 0.621 3.379 4 H -0.171 1.171 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.139 0.861 9 S 2.780 3.220 10 O -0.998 6.998 11 O -1.001 7.001 12 N -0.836 5.836 13 C 0.003 3.997 14 C -0.181 4.181 15 C 0.071 3.929 16 C -0.182 4.182 17 C -0.001 4.001 18 H 0.095 0.905 19 O -0.289 6.289 20 C 0.015 3.985 21 C -0.172 4.172 22 C -0.215 4.215 23 C -0.211 4.211 24 C -0.052 4.052 25 O -0.269 6.269 26 C -0.162 4.162 27 C 0.001 3.999 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.133 0.867 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.109 0.891 44 H 0.095 0.905 45 H 0.098 0.902 46 H 0.112 0.888 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.402 -19.064 -0.536 25.818 hybrid contribution -0.403 0.145 0.051 0.431 sum 16.999 -18.919 -0.486 25.439 Atomic orbital electron populations 1.69999 1.06582 1.28927 1.39854 1.24456 0.94793 0.98805 0.88699 0.87872 0.83611 0.84585 0.81791 1.17064 1.17949 1.14171 1.30571 1.15838 1.02092 1.66358 0.86096 1.01364 0.77220 0.70305 0.73141 1.93440 1.85357 1.75794 1.45224 1.93385 1.85325 1.75945 1.45402 1.57601 1.84367 1.31325 1.10294 1.21171 0.95260 0.97045 0.86235 1.22336 0.99214 0.99467 0.97130 1.21856 0.86645 0.88005 0.96351 1.23095 0.97811 0.92944 1.04330 1.23719 0.89409 0.93641 0.93348 0.90472 1.87924 1.63950 1.23583 1.53417 1.22072 0.97372 0.82492 0.96566 1.22147 0.97308 0.96674 1.01080 1.23077 0.93004 1.03603 1.01779 1.22983 1.03269 0.91305 1.03581 1.23967 0.92017 0.90619 0.98583 1.88979 1.36489 1.20770 1.80663 1.22038 0.99269 0.98771 0.96097 1.21194 0.95307 0.97104 0.86265 0.90990 0.88902 0.91481 0.90524 0.90819 0.89686 0.89110 0.92746 0.93085 0.86743 0.88553 0.88667 0.88634 0.88328 0.91239 0.89150 0.90514 0.90244 0.88840 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.24 13.96 55.43 0.77 -23.47 16 2 C 0.15 4.44 5.47 -17.82 -0.10 4.34 16 3 Si 0.80 20.90 26.54 -169.99 -4.51 16.39 16 4 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.26 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.22 -5.81 5.61 56.52 0.32 -5.49 16 7 C -1.01 -28.94 10.29 30.60 0.31 -28.63 16 8 H 0.12 3.52 8.06 -52.49 -0.42 3.10 16 9 S 2.68 68.00 4.22 -107.50 -0.45 67.55 16 10 O -1.01 -27.02 14.61 -57.17 -0.84 -27.86 16 11 O -1.01 -27.10 15.42 -57.17 -0.88 -27.98 16 12 N -1.00 -20.12 3.28 -113.47 -0.37 -20.50 16 13 C 0.13 2.25 6.26 -3.68 -0.02 2.23 16 14 C -0.14 -2.00 4.82 -26.70 -0.13 -2.12 16 15 C 0.11 1.42 0.71 -90.32 -0.06 1.36 16 16 C -0.14 -1.49 6.04 -25.25 -0.15 -1.65 16 17 C 0.06 0.54 3.60 -24.69 -0.09 0.46 16 18 H 0.08 0.65 7.86 -51.93 -0.41 0.24 16 19 O -0.37 -3.65 10.11 -35.23 -0.36 -4.00 16 20 C 0.09 0.69 6.08 37.16 0.23 0.92 16 21 C -0.15 -1.08 6.06 -90.61 -0.55 -1.63 16 22 C -0.18 -1.06 10.18 -26.73 -0.27 -1.33 16 23 C -0.17 -0.95 10.25 -26.73 -0.27 -1.22 16 24 C 0.03 0.27 7.40 38.22 0.28 0.55 16 25 O -0.35 -4.69 9.79 -35.23 -0.34 -5.03 16 26 C -0.12 -1.67 4.88 -26.71 -0.13 -1.80 16 27 C 0.13 2.20 6.26 -3.69 -0.02 2.17 16 28 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.09 1.70 6.91 -51.93 -0.36 1.34 16 30 H 0.07 1.12 7.88 -51.93 -0.41 0.72 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 34 H 0.09 0.95 7.62 -51.93 -0.40 0.55 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.34 7.85 -51.93 -0.41 -0.06 16 37 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 46 H 0.09 1.68 6.92 -51.93 -0.36 1.32 16 47 H 0.07 1.14 7.89 -51.93 -0.41 0.73 16 LS Contribution 380.60 15.07 5.74 5.74 Total: -1.00 -33.52 380.60 -10.08 -43.61 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.86 Total: 1.92 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -0.98 Total: -26.36 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.40 Total: -43.96 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -2.42 Total: -64.87 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.51 Total: 16.39 kcal Atomic # 16 Polarization: 68.00 SS G_CDS: -0.45 Total: 67.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.52 -10.08 -43.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.695 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds