Wall clock time and date at job start Wed Apr 1 2020 02:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00209 * 2 1 4 4 H 1.48491 * 109.47104 * 270.00161 * 3 2 1 5 5 H 1.48508 * 109.46726 * 29.99797 * 3 2 1 6 6 H 1.48497 * 109.47325 * 149.99589 * 3 2 1 7 7 C 1.37876 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00227 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00032 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.40223 * 66.45988 * 9 7 2 11 11 O 1.42097 * 106.40146 * 293.54134 * 9 7 2 12 12 N 1.65604 * 107.21895 * 180.02562 * 9 7 2 13 13 C 1.46930 * 120.59611 * 89.99926 * 12 9 7 14 14 C 1.53238 * 108.74768 * 126.11496 * 13 12 9 15 15 C 1.52817 * 109.32811 * 54.20149 * 14 13 12 16 16 C 1.53958 * 109.67859 * 178.48296 * 15 14 13 17 17 C 1.54860 * 104.06759 * 242.61708 * 16 15 14 18 18 H 1.09005 * 110.90661 * 262.58607 * 17 16 15 19 19 O 1.42901 * 110.90568 * 139.02778 * 17 16 15 20 20 C 1.42895 * 114.00313 * 152.92220 * 19 17 16 21 21 C 1.53003 * 109.47298 * 180.02562 * 20 19 17 22 22 C 1.53001 * 117.51964 * 116.28202 * 21 20 19 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 20 24 24 C 1.55004 * 102.13448 * 20.80795 * 17 16 15 25 25 O 1.43520 * 109.82927 * 60.50033 * 15 14 13 26 26 C 1.52803 * 110.24283 * 299.32308 * 15 14 13 27 27 C 1.46920 * 120.59888 * 270.02197 * 12 9 7 28 28 H 0.97005 * 119.99984 * 0.02562 * 1 2 3 29 29 H 1.08992 * 109.59247 * 6.33821 * 13 12 9 30 30 H 1.09003 * 109.70964 * 245.96100 * 13 12 9 31 31 H 1.09003 * 109.49553 * 294.24374 * 14 13 12 32 32 H 1.09000 * 109.51686 * 174.17209 * 14 13 12 33 33 H 1.08999 * 110.53350 * 123.96433 * 16 15 14 34 34 H 1.09005 * 110.49959 * 1.25218 * 16 15 14 35 35 H 1.08999 * 109.47440 * 59.99511 * 20 19 17 36 36 H 1.09005 * 109.46905 * 299.99670 * 20 19 17 37 37 H 1.09002 * 115.54973 * 330.57985 * 21 20 19 38 38 H 1.09001 * 117.49733 * 214.97413 * 22 21 20 39 39 H 1.08995 * 117.49577 * 359.97438 * 22 21 20 40 40 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 41 41 H 1.09004 * 117.51638 * 107.47550 * 23 22 21 42 42 H 1.09007 * 110.61558 * 81.64014 * 24 17 16 43 43 H 1.09002 * 110.61102 * 204.45728 * 24 17 16 44 44 H 1.08991 * 109.49822 * 180.62070 * 26 15 14 45 45 H 1.09010 * 109.49454 * 300.70632 * 26 15 14 46 46 H 1.09003 * 109.58895 * 353.65705 * 27 12 9 47 47 H 1.08996 * 109.58614 * 113.94642 * 27 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1673 -0.6494 1.2510 11 8 4.1682 -0.6499 -1.2484 12 7 4.2567 -2.7759 0.0011 13 6 4.4785 -3.4900 -1.2638 14 6 5.8903 -4.0856 -1.2520 15 6 6.0677 -4.9417 0.0014 16 6 7.4710 -5.5750 0.0024 17 6 7.1965 -7.0982 -0.0513 18 1 7.2414 -7.5369 0.9456 19 8 8.1114 -7.7503 -0.9343 20 6 8.3554 -9.1205 -0.6103 21 6 9.3443 -9.7141 -1.6157 22 6 10.6992 -10.1832 -1.0818 23 6 9.6482 -11.2098 -1.5087 24 6 5.7531 -7.1495 -0.6138 25 8 5.1105 -6.0110 0.0001 26 6 5.8888 -4.0867 1.2552 27 6 4.4771 -3.4907 1.2656 28 1 -0.4850 0.8401 -0.0004 29 1 4.3822 -2.7948 -2.0977 30 1 3.7453 -4.2898 -1.3679 31 1 6.6249 -3.2803 -1.2495 32 1 6.0319 -4.7044 -2.1381 33 1 8.0069 -5.3156 0.9154 34 1 8.0338 -5.2573 -0.8753 35 1 7.4183 -9.6758 -0.6506 36 1 8.7745 -9.1874 0.3937 37 1 9.3209 -9.2753 -2.6132 38 1 11.5672 -10.0529 -1.7281 39 1 10.8865 -10.0685 -0.0142 40 1 9.1439 -11.7709 -0.7219 41 1 9.8244 -11.7551 -2.4360 42 1 5.7602 -7.0471 -1.6990 43 1 5.2596 -8.0761 -0.3204 44 1 6.0285 -4.7063 2.1410 45 1 6.6236 -3.2815 1.2544 46 1 4.3799 -2.7959 2.0999 47 1 3.7418 -4.2889 1.3671 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:46 Heat of formation + Delta-G solvation = -165.158379 kcal Electronic energy + Delta-G solvation = -29269.645024 eV Core-core repulsion = 25158.266024 eV Total energy + Delta-G solvation = -4111.379001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.46311 -39.29384 -37.93051 -37.75238 -36.98294 -36.48907 -35.19052 -33.27218 -32.10845 -31.48030 -28.55344 -27.83018 -27.42040 -24.54716 -23.88661 -23.24844 -22.29351 -21.51275 -21.15947 -20.57121 -19.20106 -18.74616 -18.21629 -17.28314 -16.97722 -16.81461 -16.60528 -16.31982 -16.05877 -15.70311 -15.43826 -15.33096 -15.17276 -15.07405 -14.87893 -14.47054 -14.28392 -13.94232 -13.71308 -13.62042 -13.36988 -13.19257 -12.89007 -12.73986 -12.65997 -12.58652 -12.50589 -12.39718 -12.36268 -12.11159 -11.99484 -11.81537 -11.63682 -11.39798 -11.34496 -11.23915 -11.18169 -11.11545 -10.60118 -10.29518 -9.76384 -8.97378 -7.52981 0.11163 1.03236 1.12994 1.20052 1.87946 2.35734 2.40143 2.44092 2.88276 3.08313 3.37568 3.49469 3.65295 3.73842 3.82171 3.85967 3.97761 4.00765 4.05159 4.09771 4.23169 4.28887 4.35094 4.35987 4.46096 4.49089 4.55570 4.62664 4.70807 4.73895 4.78758 4.80403 4.81697 4.85319 4.90394 5.00159 5.02951 5.10810 5.13330 5.24347 5.25271 5.27271 5.31891 5.42483 5.89038 5.96678 6.00806 6.28403 6.52625 8.20813 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.036727 B = 0.002298 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.201455 B =12179.471182 C =12288.974590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.104 3.896 3 Si 0.827 3.173 4 H -0.239 1.239 5 H -0.218 1.218 6 H -0.227 1.227 7 C -1.040 5.040 8 H 0.099 0.901 9 S 2.697 3.303 10 O -1.023 7.023 11 O -1.026 7.026 12 N -0.996 5.996 13 C 0.121 3.879 14 C -0.139 4.139 15 C 0.111 3.889 16 C -0.139 4.139 17 C 0.064 3.936 18 H 0.093 0.907 19 O -0.385 6.385 20 C 0.088 3.912 21 C -0.170 4.170 22 C -0.179 4.179 23 C -0.166 4.166 24 C 0.021 3.979 25 O -0.369 6.369 26 C -0.119 4.119 27 C 0.117 3.883 28 H 0.291 0.709 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.064 0.936 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.148 -21.322 0.047 28.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.112 4.112 3 Si 0.644 3.356 4 H -0.162 1.162 5 H -0.140 1.140 6 H -0.149 1.149 7 C -1.172 5.172 8 H 0.118 0.882 9 S 2.798 3.202 10 O -1.013 7.013 11 O -1.017 7.017 12 N -0.835 5.835 13 C -0.005 4.005 14 C -0.178 4.178 15 C 0.071 3.929 16 C -0.176 4.176 17 C 0.006 3.994 18 H 0.111 0.889 19 O -0.304 6.304 20 C 0.012 3.988 21 C -0.188 4.188 22 C -0.216 4.216 23 C -0.203 4.203 24 C -0.056 4.056 25 O -0.289 6.289 26 C -0.158 4.158 27 C -0.008 4.008 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.123 0.877 41 H 0.123 0.877 42 H 0.083 0.917 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.393 -20.388 -0.016 28.138 hybrid contribution -1.059 0.399 -0.144 1.140 sum 18.334 -19.988 -0.160 27.124 Atomic orbital electron populations 1.70027 1.07527 1.30461 1.40562 1.25252 0.95711 1.01640 0.88609 0.87458 0.82928 0.82563 0.82651 1.16208 1.14012 1.14939 1.31132 1.18505 1.01373 1.66176 0.88243 1.00571 0.75550 0.71717 0.72327 1.93407 1.84929 1.77253 1.45735 1.93352 1.84914 1.77426 1.45979 1.57296 1.83733 1.30033 1.12477 1.21388 0.98002 0.96583 0.84490 1.22345 0.96477 0.99958 0.99044 1.21819 0.88210 0.87904 0.94948 1.23028 0.96020 0.93364 1.05210 1.23648 0.88574 0.93208 0.93962 0.88864 1.87909 1.63895 1.24779 1.53825 1.22207 0.97925 0.81480 0.97143 1.22149 0.98151 0.97909 1.00612 1.23156 0.92771 1.03577 1.02128 1.23069 1.02501 0.90550 1.04129 1.24119 0.92870 0.90290 0.98295 1.88961 1.37390 1.21598 1.80943 1.22061 0.96420 0.99347 0.97968 1.21458 0.98232 0.96690 0.84391 0.89860 0.90298 0.91130 0.90312 0.88933 0.88022 0.89173 0.92017 0.92102 0.87879 0.88304 0.88169 0.87708 0.87692 0.91731 0.87607 0.87660 0.89809 0.89982 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.02 13.96 21.45 0.30 -50.72 16 2 C 0.10 6.18 5.47 84.65 0.46 6.65 16 3 Si 0.83 42.10 26.54 68.60 1.82 43.92 16 4 H -0.24 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.22 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.23 -11.79 5.61 99.48 0.56 -11.23 16 7 C -1.04 -60.96 10.29 67.73 0.70 -60.26 16 8 H 0.10 6.06 8.06 -2.91 -0.02 6.03 16 9 S 2.70 138.37 4.22 -56.49 -0.24 138.13 16 10 O -1.02 -54.98 14.61 -128.00 -1.87 -56.85 16 11 O -1.03 -55.38 15.42 -128.00 -1.97 -57.35 16 12 N -1.00 -40.13 3.28 -512.92 -1.68 -41.82 16 13 C 0.12 4.19 6.26 86.38 0.54 4.74 16 14 C -0.14 -3.70 4.82 30.61 0.15 -3.55 16 15 C 0.11 2.59 0.71 -10.60 -0.01 2.58 16 16 C -0.14 -2.46 6.04 31.55 0.19 -2.27 16 17 C 0.06 1.04 3.60 31.92 0.11 1.15 16 18 H 0.09 1.22 7.86 -2.38 -0.02 1.20 16 19 O -0.38 -6.68 10.11 -148.98 -1.51 -8.18 16 20 C 0.09 1.13 6.08 71.98 0.44 1.57 16 21 C -0.17 -2.11 6.06 -10.79 -0.07 -2.17 16 22 C -0.18 -1.81 10.18 30.59 0.31 -1.50 16 23 C -0.17 -1.47 10.25 30.60 0.31 -1.16 16 24 C 0.02 0.39 7.40 72.67 0.54 0.93 16 25 O -0.37 -9.14 9.79 -148.98 -1.46 -10.60 16 26 C -0.12 -2.98 4.88 30.61 0.15 -2.83 16 27 C 0.12 3.97 6.26 86.38 0.54 4.52 16 28 H 0.29 15.57 8.31 -92.70 -0.77 14.80 16 29 H 0.08 2.93 6.91 -2.39 -0.02 2.92 16 30 H 0.07 2.37 7.88 -2.39 -0.02 2.35 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.10 1.48 7.69 -2.39 -0.02 1.46 16 34 H 0.09 1.63 7.62 -2.38 -0.02 1.62 16 35 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.06 0.65 7.85 -2.38 -0.02 0.63 16 37 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.10 0.90 8.03 -2.39 -0.02 0.88 16 40 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 43 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 46 H 0.08 2.94 6.92 -2.39 -0.02 2.93 16 47 H 0.07 2.36 7.89 -2.39 -0.02 2.34 16 Total: -1.00 -72.27 380.60 -1.44 -73.71 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.80 Total: 21.35 kcal Atomic # 6 Polarization: -55.97 SS G_CDS: 4.37 Total: -51.60 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -1.39 Total: -92.54 kcal Atomic # 8 Polarization: -126.17 SS G_CDS: -6.81 Total: -132.98 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 1.82 Total: 43.92 kcal Atomic # 16 Polarization: 138.37 SS G_CDS: -0.24 Total: 138.13 kcal Total: -72.27 -1.44 -73.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.450 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds