Wall clock time and date at job start Wed Apr 1 2020 02:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48492 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46971 * 300.00110 * 3 2 1 6 6 H 1.48504 * 109.46950 * 59.99940 * 3 2 1 7 7 C 1.39027 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 197.62164 * 7 2 1 9 9 N 1.36872 * 119.99959 * 17.62777 * 7 2 1 10 10 C 1.38243 * 125.62354 * 218.38081 * 9 7 2 11 11 C 1.46715 * 125.44900 * 359.96049 * 10 9 7 12 12 O 1.21589 * 120.00348 * 185.34818 * 11 10 9 13 13 O 1.34865 * 119.99690 * 5.34213 * 11 10 9 14 14 C 1.45204 * 116.99909 * 184.18804 * 13 11 10 15 15 C 1.53000 * 109.47088 * 175.28263 * 14 13 11 16 16 C 1.53004 * 109.47260 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47146 * 180.02562 * 16 15 14 18 18 O 1.43750 * 109.63097 * 294.36546 * 17 16 15 19 19 C 1.44785 * 104.81787 * 215.81028 * 18 17 16 20 20 C 1.54908 * 101.71944 * 36.10366 * 19 18 17 21 21 O 1.43366 * 109.62909 * 175.00267 * 17 16 15 22 22 C 1.36213 * 109.10671 * 179.97438 * 10 9 7 23 23 C 1.41659 * 107.74150 * 359.97438 * 22 10 9 24 24 C 1.40041 * 133.33740 * 179.97438 * 23 22 10 25 25 C 1.36563 * 119.83291 * 180.02562 * 24 23 22 26 26 C 1.38864 * 120.60036 * 359.97438 * 25 24 23 27 27 C 1.37843 * 120.63817 * 0.27555 * 26 25 24 28 28 C 1.37831 * 125.61921 * 38.37785 * 9 7 2 29 29 H 0.96999 * 120.00260 * 4.94359 * 1 2 3 30 30 H 1.08991 * 109.47474 * 295.28705 * 14 13 11 31 31 H 1.08999 * 109.46750 * 55.29009 * 14 13 11 32 32 H 1.08999 * 109.47517 * 300.00810 * 15 14 13 33 33 H 1.09002 * 109.46996 * 60.00288 * 15 14 13 34 34 H 1.08996 * 109.46711 * 300.00452 * 16 15 14 35 35 H 1.08999 * 109.46644 * 60.00706 * 16 15 14 36 36 H 1.08998 * 109.62676 * 54.60762 * 17 16 15 37 37 H 1.09002 * 110.97454 * 277.99841 * 19 18 17 38 38 H 1.09001 * 111.01141 * 154.22857 * 19 18 17 39 39 H 1.09002 * 110.69684 * 206.04313 * 20 19 18 40 40 H 1.08993 * 110.84555 * 82.90881 * 20 19 18 41 41 H 1.07997 * 126.13150 * 179.97438 * 22 10 9 42 42 H 1.08002 * 120.08871 * 0.02562 * 24 23 22 43 43 H 1.07996 * 119.70166 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.68583 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.09661 * 179.70531 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7074 1.3463 0.0006 5 1 1.8887 2.3964 -1.2124 6 1 1.8887 2.3964 1.2125 7 6 2.0086 -1.2040 0.0005 8 1 3.0506 -1.2258 0.2837 9 7 1.3724 -2.3617 -0.3579 10 6 1.5601 -3.5988 0.2298 11 6 2.4760 -3.8832 1.3401 12 8 2.6360 -5.0276 1.7184 13 8 3.1405 -2.8752 1.9412 14 6 4.0994 -3.2384 2.9692 15 6 4.8327 -1.9841 3.4486 16 6 5.8428 -2.3666 4.5324 17 6 6.5756 -1.1122 5.0122 18 8 7.3727 -0.5792 3.9413 19 6 8.5630 -0.0654 4.5859 20 6 8.7823 -1.1032 5.7148 21 8 7.4382 -1.4476 6.1072 22 6 0.7591 -4.5116 -0.3870 23 6 0.0360 -3.8362 -1.4008 24 6 -0.9168 -4.2501 -2.3399 25 6 -1.4495 -3.3440 -3.2118 26 6 -1.0555 -2.0129 -3.1764 27 6 -0.1156 -1.5825 -2.2646 28 6 0.4389 -2.4862 -1.3643 29 1 -0.4850 0.8369 -0.0724 30 1 3.5764 -3.6966 3.8085 31 1 4.8201 -3.9464 2.5600 32 1 5.3558 -1.5258 2.6093 33 1 4.1121 -1.2760 3.8579 34 1 5.3192 -2.8246 5.3715 35 1 6.5635 -3.0748 4.1235 36 1 5.8502 -0.3646 5.3331 37 1 8.3856 0.9280 4.9981 38 1 9.4071 -0.0545 3.8964 39 1 9.3246 -0.6569 6.5484 40 1 9.3103 -1.9795 5.3388 41 1 0.6879 -5.5620 -0.1464 42 1 -1.2296 -5.2832 -2.3746 43 1 -2.1844 -3.6654 -3.9349 44 1 -1.4867 -1.3087 -3.8726 45 1 0.1880 -0.5462 -2.2479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346422488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:52 Heat of formation + Delta-G solvation = -121.663946 kcal Electronic energy + Delta-G solvation = -29750.490335 eV Core-core repulsion = 25505.553443 eV Total energy + Delta-G solvation = -4244.936892 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61680 -40.49266 -39.25286 -36.20507 -35.89686 -35.27485 -34.25690 -33.62218 -30.72259 -30.36323 -29.09317 -28.33023 -27.23373 -24.93463 -24.03450 -23.52906 -22.46153 -21.27334 -21.02414 -20.36631 -19.22389 -18.01132 -17.51368 -17.19487 -16.90430 -16.47904 -15.90599 -15.84883 -15.37601 -14.98660 -14.82245 -14.67328 -14.24093 -13.97700 -13.65178 -13.37766 -13.19757 -13.06176 -12.96478 -12.84162 -12.41222 -12.36355 -12.19566 -11.95858 -11.79922 -11.67238 -11.33464 -11.27930 -11.05092 -10.95178 -10.76782 -10.57380 -10.55413 -10.28042 -10.04642 -9.99551 -9.82674 -9.81974 -9.15927 -8.67368 -7.23253 -6.92219 -6.57593 -4.48014 1.66863 2.74414 2.92255 2.99329 3.02592 3.06067 3.08460 3.28154 3.75367 3.78836 4.09935 4.22849 4.51226 4.53380 4.64945 4.69012 4.76944 4.87456 5.01616 5.06848 5.11785 5.20247 5.33165 5.36913 5.49029 5.55553 5.61920 5.77035 5.79537 5.89373 5.95119 6.12822 6.15962 6.29515 6.39323 6.53180 6.64300 6.75968 6.84772 6.98631 7.02295 7.07787 7.13742 7.47778 7.56841 7.64866 7.89376 8.00851 8.35394 8.47306 8.80276 9.26247 10.17256 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.002861 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.557805 B = 9784.346438 C =11414.657134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.054 3.946 3 Si 0.925 3.075 4 H -0.259 1.259 5 H -0.272 1.272 6 H -0.274 1.274 7 C -0.339 4.339 8 H 0.117 0.883 9 N -0.237 5.237 10 C -0.021 4.021 11 C 0.546 3.454 12 O -0.529 6.529 13 O -0.332 6.332 14 C 0.067 3.933 15 C -0.116 4.116 16 C -0.127 4.127 17 C 0.233 3.767 18 O -0.372 6.372 19 C 0.015 3.985 20 C 0.021 3.979 21 O -0.386 6.386 22 C -0.162 4.162 23 C -0.132 4.132 24 C -0.085 4.085 25 C -0.157 4.157 26 C -0.148 4.148 27 C -0.051 4.051 28 C 0.092 3.908 29 H 0.282 0.718 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.133 0.867 42 H 0.105 0.895 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.812 1.749 6.405 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.159 4.159 3 Si 0.749 3.251 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.199 1.199 7 C -0.467 4.467 8 H 0.135 0.865 9 N 0.101 4.899 10 C -0.134 4.134 11 C 0.394 3.606 12 O -0.420 6.420 13 O -0.248 6.248 14 C -0.008 4.008 15 C -0.154 4.154 16 C -0.165 4.165 17 C 0.139 3.861 18 O -0.292 6.292 19 C -0.062 4.062 20 C -0.056 4.056 21 O -0.307 6.307 22 C -0.189 4.189 23 C -0.136 4.136 24 C -0.104 4.104 25 C -0.176 4.176 26 C -0.169 4.169 27 C -0.071 4.071 28 C -0.024 4.024 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.094 0.906 41 H 0.151 0.849 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 11.785 1.796 6.767 13.708 hybrid contribution 0.367 0.868 0.285 0.984 sum 12.151 2.664 7.052 14.300 Atomic orbital electron populations 1.70023 1.06453 1.29670 1.38404 1.25628 0.95342 1.00629 0.94302 0.85887 0.80467 0.80189 0.78565 1.18250 1.19691 1.19941 1.20018 0.96277 0.82715 1.47671 0.86508 1.40133 1.26000 1.05264 1.18489 1.19060 1.06052 0.88705 0.99590 1.20062 0.77688 0.82480 0.80396 1.90781 1.64563 1.22207 1.64407 1.86856 1.50967 1.37589 1.49391 1.22878 0.90619 0.97284 0.89977 1.21405 0.97560 0.97478 0.98913 1.21883 0.98343 0.96839 0.99439 1.24127 0.89719 0.94664 0.77635 1.89312 1.31783 1.77770 1.30360 1.24386 0.88959 0.97655 0.95167 1.24186 0.85009 0.98184 0.98210 1.88896 1.17043 1.86113 1.38663 1.20294 1.00552 0.97994 1.00073 1.17934 1.02039 0.93261 1.00357 1.20047 0.96839 0.98213 0.95298 1.20277 1.02562 0.93794 1.01007 1.20576 1.00063 0.95624 1.00645 1.20111 0.95885 0.97963 0.93105 1.18138 0.97613 0.93893 0.92793 0.90760 0.91646 0.91675 0.89845 0.90381 0.89521 0.90503 0.89403 0.90566 0.87310 0.88302 0.90576 0.84871 0.87674 0.87840 0.87610 0.86795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -20.81 10.88 55.50 0.60 -20.20 16 2 C 0.05 1.31 4.44 -17.47 -0.08 1.23 16 3 Si 0.93 18.52 29.59 -169.99 -5.03 13.49 16 4 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 5 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.34 -8.62 8.73 -15.01 -0.13 -8.75 16 8 H 0.12 2.90 6.88 -52.49 -0.36 2.54 16 9 N -0.24 -6.17 2.83 -56.10 -0.16 -6.33 16 10 C -0.02 -0.52 6.76 -82.28 -0.56 -1.07 16 11 C 0.55 12.66 7.90 34.15 0.27 12.93 16 12 O -0.53 -12.35 16.62 -19.33 -0.32 -12.67 16 13 O -0.33 -7.04 8.03 -40.95 -0.33 -7.36 16 14 C 0.07 1.09 5.50 37.16 0.20 1.29 16 15 C -0.12 -1.59 5.50 -26.73 -0.15 -1.74 16 16 C -0.13 -1.45 5.30 -26.73 -0.14 -1.59 16 17 C 0.23 2.61 4.01 37.16 0.15 2.76 16 18 O -0.37 -4.38 10.92 -59.04 -0.64 -5.02 16 19 C 0.01 0.11 7.95 38.16 0.30 0.42 16 20 C 0.02 0.15 8.07 38.16 0.31 0.46 16 21 O -0.39 -4.20 11.22 -59.04 -0.66 -4.86 16 22 C -0.16 -3.80 10.55 -39.01 -0.41 -4.22 16 23 C -0.13 -3.12 6.16 -106.90 -0.66 -3.78 16 24 C -0.09 -1.74 10.06 -39.51 -0.40 -2.14 16 25 C -0.16 -3.02 9.97 -39.95 -0.40 -3.42 16 26 C -0.15 -3.01 10.02 -39.49 -0.40 -3.41 16 27 C -0.05 -1.20 8.55 -39.41 -0.34 -1.54 16 28 C 0.09 2.32 6.08 -83.83 -0.51 1.81 16 29 H 0.28 6.62 8.31 -40.82 -0.34 6.28 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.02 8.09 -51.93 -0.42 0.60 16 32 H 0.08 1.23 7.85 -51.93 -0.41 0.82 16 33 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.13 2.83 8.06 -52.49 -0.42 2.41 16 42 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 44 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 45 H 0.11 2.71 6.44 -52.48 -0.34 2.37 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -30.56 380.05 -9.90 -40.46 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.16 Total: 7.51 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.93 Total: -10.74 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.44 Total: -26.54 kcal Atomic # 8 Polarization: -27.96 SS G_CDS: -1.96 Total: -29.92 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -5.03 Total: 13.49 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.56 -9.90 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346422488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.201 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds