Wall clock time and date at job start Wed Apr 1 2020 02:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31344 * 1 3 3 Si 1.86802 * 120.00077 * 2 1 4 4 H 1.48492 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.46971 * 300.00110 * 3 2 1 6 6 H 1.48504 * 109.46950 * 59.99940 * 3 2 1 7 7 C 1.39027 * 120.00023 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00016 * 197.62164 * 7 2 1 9 9 N 1.36872 * 119.99959 * 17.62777 * 7 2 1 10 10 C 1.38243 * 125.62354 * 218.38081 * 9 7 2 11 11 C 1.46715 * 125.44900 * 359.96049 * 10 9 7 12 12 O 1.21589 * 120.00348 * 185.34818 * 11 10 9 13 13 O 1.34865 * 119.99690 * 5.34213 * 11 10 9 14 14 C 1.45204 * 116.99909 * 184.18804 * 13 11 10 15 15 C 1.53000 * 109.47088 * 175.28263 * 14 13 11 16 16 C 1.53004 * 109.47260 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.47146 * 180.02562 * 16 15 14 18 18 O 1.43750 * 109.63097 * 294.36546 * 17 16 15 19 19 C 1.44785 * 104.81787 * 215.81028 * 18 17 16 20 20 C 1.54908 * 101.71944 * 36.10366 * 19 18 17 21 21 O 1.43366 * 109.62909 * 175.00267 * 17 16 15 22 22 C 1.36213 * 109.10671 * 179.97438 * 10 9 7 23 23 C 1.41659 * 107.74150 * 359.97438 * 22 10 9 24 24 C 1.40041 * 133.33740 * 179.97438 * 23 22 10 25 25 C 1.36563 * 119.83291 * 180.02562 * 24 23 22 26 26 C 1.38864 * 120.60036 * 359.97438 * 25 24 23 27 27 C 1.37843 * 120.63817 * 0.27555 * 26 25 24 28 28 C 1.37831 * 125.61921 * 38.37785 * 9 7 2 29 29 H 0.96999 * 120.00260 * 4.94359 * 1 2 3 30 30 H 1.08991 * 109.47474 * 295.28705 * 14 13 11 31 31 H 1.08999 * 109.46750 * 55.29009 * 14 13 11 32 32 H 1.08999 * 109.47517 * 300.00810 * 15 14 13 33 33 H 1.09002 * 109.46996 * 60.00288 * 15 14 13 34 34 H 1.08996 * 109.46711 * 300.00452 * 16 15 14 35 35 H 1.08999 * 109.46644 * 60.00706 * 16 15 14 36 36 H 1.08998 * 109.62676 * 54.60762 * 17 16 15 37 37 H 1.09002 * 110.97454 * 277.99841 * 19 18 17 38 38 H 1.09001 * 111.01141 * 154.22857 * 19 18 17 39 39 H 1.09002 * 110.69684 * 206.04313 * 20 19 18 40 40 H 1.08993 * 110.84555 * 82.90881 * 20 19 18 41 41 H 1.07997 * 126.13150 * 179.97438 * 22 10 9 42 42 H 1.08002 * 120.08871 * 0.02562 * 24 23 22 43 43 H 1.07996 * 119.70166 * 180.02562 * 25 24 23 44 44 H 1.08004 * 119.68583 * 180.02562 * 26 25 24 45 45 H 1.08004 * 120.09661 * 179.70531 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 3.7074 1.3463 0.0006 5 1 1.8887 2.3964 -1.2124 6 1 1.8887 2.3964 1.2125 7 6 2.0086 -1.2040 0.0005 8 1 3.0506 -1.2258 0.2837 9 7 1.3724 -2.3617 -0.3579 10 6 1.5601 -3.5988 0.2298 11 6 2.4760 -3.8832 1.3401 12 8 2.6360 -5.0276 1.7184 13 8 3.1405 -2.8752 1.9412 14 6 4.0994 -3.2384 2.9692 15 6 4.8327 -1.9841 3.4486 16 6 5.8428 -2.3666 4.5324 17 6 6.5756 -1.1122 5.0122 18 8 7.3727 -0.5792 3.9413 19 6 8.5630 -0.0654 4.5859 20 6 8.7823 -1.1032 5.7148 21 8 7.4382 -1.4476 6.1072 22 6 0.7591 -4.5116 -0.3870 23 6 0.0360 -3.8362 -1.4008 24 6 -0.9168 -4.2501 -2.3399 25 6 -1.4495 -3.3440 -3.2118 26 6 -1.0555 -2.0129 -3.1764 27 6 -0.1156 -1.5825 -2.2646 28 6 0.4389 -2.4862 -1.3643 29 1 -0.4850 0.8369 -0.0724 30 1 3.5764 -3.6966 3.8085 31 1 4.8201 -3.9464 2.5600 32 1 5.3558 -1.5258 2.6093 33 1 4.1121 -1.2760 3.8579 34 1 5.3192 -2.8246 5.3715 35 1 6.5635 -3.0748 4.1235 36 1 5.8502 -0.3646 5.3331 37 1 8.3856 0.9280 4.9981 38 1 9.4071 -0.0545 3.8964 39 1 9.3246 -0.6569 6.5484 40 1 9.3103 -1.9795 5.3388 41 1 0.6879 -5.5620 -0.1464 42 1 -1.2296 -5.2832 -2.3746 43 1 -2.1844 -3.6654 -3.9349 44 1 -1.4867 -1.3087 -3.8726 45 1 0.1880 -0.5462 -2.2479 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001346422488.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:51 Heat of formation + Delta-G solvation = -137.141045 kcal Electronic energy + Delta-G solvation = -29751.161472 eV Core-core repulsion = 25505.553443 eV Total energy + Delta-G solvation = -4245.608029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.26866 -41.37345 -40.94716 -37.80483 -37.58946 -36.06807 -35.46631 -35.37188 -32.50726 -31.26473 -30.73314 -29.96358 -28.34495 -26.77676 -25.47008 -24.30150 -23.59793 -22.76122 -22.35312 -22.04081 -20.99654 -19.76609 -18.80424 -18.27274 -17.82747 -17.82015 -17.42045 -17.20145 -16.87369 -16.47877 -16.34680 -15.88583 -15.56666 -15.12016 -14.99287 -14.75074 -14.65422 -14.57127 -14.30232 -13.93580 -13.76656 -13.64215 -13.60189 -13.51410 -13.22395 -13.01270 -12.87440 -12.49958 -12.38889 -12.36332 -12.16365 -12.08097 -11.96880 -11.73471 -11.50231 -11.47557 -11.21628 -10.94632 -10.67830 -10.44708 -9.00866 -8.71764 -8.34715 -6.37901 -0.08580 1.08005 1.16872 1.36291 1.39292 1.51342 1.66110 2.11116 2.29152 2.45194 2.75595 2.86650 2.95899 3.34390 3.61462 3.73522 3.77721 3.88209 4.00112 4.05800 4.13427 4.19374 4.21579 4.35532 4.40961 4.42848 4.49934 4.53990 4.60489 4.71685 4.73278 4.75210 4.80405 4.92751 4.95996 5.07741 5.10450 5.17762 5.19795 5.32437 5.37267 5.43813 5.73338 5.89273 5.95019 6.02254 6.15483 6.28953 6.56506 6.70812 6.98877 7.43056 8.37650 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.014191 B = 0.002861 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.557805 B = 9784.346438 C =11414.657134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.021 3.979 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.262 1.262 6 H -0.269 1.269 7 C -0.364 4.364 8 H 0.110 0.890 9 N -0.258 5.258 10 C -0.053 4.053 11 C 0.546 3.454 12 O -0.538 6.538 13 O -0.345 6.345 14 C 0.061 3.939 15 C -0.105 4.105 16 C -0.119 4.119 17 C 0.233 3.767 18 O -0.399 6.399 19 C 0.009 3.991 20 C 0.016 3.984 21 O -0.402 6.402 22 C -0.163 4.163 23 C -0.154 4.154 24 C -0.087 4.087 25 C -0.151 4.151 26 C -0.132 4.132 27 C -0.086 4.086 28 C 0.065 3.935 29 H 0.286 0.714 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.082 0.918 41 H 0.151 0.849 42 H 0.138 0.862 43 H 0.150 0.850 44 H 0.139 0.861 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.841 2.010 5.852 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.189 4.189 3 Si 0.810 3.190 4 H -0.180 1.180 5 H -0.187 1.187 6 H -0.194 1.194 7 C -0.491 4.491 8 H 0.128 0.872 9 N 0.080 4.920 10 C -0.166 4.166 11 C 0.394 3.606 12 O -0.431 6.431 13 O -0.261 6.261 14 C -0.013 4.013 15 C -0.142 4.142 16 C -0.157 4.157 17 C 0.139 3.861 18 O -0.320 6.320 19 C -0.067 4.067 20 C -0.060 4.060 21 O -0.323 6.323 22 C -0.191 4.191 23 C -0.158 4.158 24 C -0.105 4.105 25 C -0.169 4.169 26 C -0.153 4.153 27 C -0.105 4.105 28 C -0.050 4.050 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.100 0.900 41 H 0.168 0.832 42 H 0.156 0.844 43 H 0.167 0.833 44 H 0.157 0.843 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.831 2.055 6.222 13.524 hybrid contribution 0.330 0.708 0.403 0.879 sum 12.160 2.763 6.625 14.121 Atomic orbital electron populations 1.70093 1.07810 1.30626 1.39424 1.26445 0.95972 1.03208 0.93265 0.84953 0.79178 0.76024 0.78869 1.17999 1.18668 1.19438 1.20169 0.96298 0.83532 1.49126 0.87226 1.40320 1.26898 1.05538 1.19291 1.19537 1.07209 0.89094 1.00719 1.19957 0.77688 0.82637 0.80284 1.90745 1.65084 1.22398 1.64824 1.86834 1.51535 1.37378 1.50340 1.23238 0.90042 0.98879 0.89113 1.21324 0.97620 0.96112 0.99175 1.21815 0.97746 0.97350 0.98801 1.24060 0.89999 0.94307 0.77777 1.89286 1.33254 1.78151 1.31316 1.24660 0.88258 0.98117 0.95624 1.24435 0.83765 0.98589 0.99166 1.88872 1.18514 1.86374 1.38559 1.20603 1.00072 0.98628 0.99802 1.18362 1.03233 0.92775 1.01429 1.20490 0.95531 1.00286 0.94221 1.20779 1.02398 0.92800 1.00943 1.21057 0.97875 0.97058 0.99279 1.20209 0.98159 0.97365 0.94814 1.18666 0.97877 0.95254 0.93219 0.90390 0.90719 0.91111 0.91098 0.90605 0.88465 0.90355 0.89212 0.89448 0.85410 0.85734 0.89984 0.83168 0.84383 0.83277 0.84319 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.49 10.88 21.67 0.24 -44.26 16 2 C 0.02 1.04 4.44 84.96 0.38 1.41 16 3 Si 0.99 38.65 29.59 68.60 2.03 40.68 16 4 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 5 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.36 -19.32 8.73 84.10 0.73 -18.58 16 8 H 0.11 5.75 6.88 -2.91 -0.02 5.73 16 9 N -0.26 -13.97 2.83 -331.41 -0.94 -14.91 16 10 C -0.05 -2.74 6.76 39.88 0.27 -2.47 16 11 C 0.55 26.28 7.90 70.04 0.55 26.83 16 12 O -0.54 -25.71 16.62 19.54 0.32 -25.38 16 13 O -0.34 -15.23 8.03 -57.79 -0.46 -15.69 16 14 C 0.06 2.03 5.50 71.98 0.40 2.42 16 15 C -0.10 -2.93 5.50 30.60 0.17 -2.76 16 16 C -0.12 -2.67 5.30 30.60 0.16 -2.51 16 17 C 0.23 5.08 4.01 71.98 0.29 5.37 16 18 O -0.40 -9.18 10.92 -126.22 -1.38 -10.55 16 19 C 0.01 0.13 7.95 72.63 0.58 0.70 16 20 C 0.02 0.21 8.07 72.63 0.59 0.80 16 21 O -0.40 -8.26 11.22 -126.22 -1.42 -9.68 16 22 C -0.16 -7.82 10.55 22.64 0.24 -7.58 16 23 C -0.15 -7.29 6.16 -21.34 -0.13 -7.42 16 24 C -0.09 -3.33 10.06 22.32 0.22 -3.11 16 25 C -0.15 -5.23 9.97 22.03 0.22 -5.01 16 26 C -0.13 -5.07 10.02 22.33 0.22 -4.85 16 27 C -0.09 -4.04 8.55 22.38 0.19 -3.85 16 28 C 0.07 3.39 6.08 39.06 0.24 3.63 16 29 H 0.29 13.73 8.31 -92.71 -0.77 12.95 16 30 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.07 2.26 8.09 -2.39 -0.02 2.24 16 32 H 0.07 2.16 7.85 -2.39 -0.02 2.14 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.10 1.95 8.14 -2.39 -0.02 1.94 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.15 6.41 8.06 -2.91 -0.02 6.39 16 42 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 43 H 0.15 3.85 8.06 -2.91 -0.02 3.83 16 44 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 45 H 0.10 4.89 6.44 -2.91 -0.02 4.87 16 Total: -1.00 -68.34 380.05 4.72 -63.63 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: 1.00 Total: 33.14 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 5.32 Total: -16.97 kcal Atomic # 7 Polarization: -58.46 SS G_CDS: -0.70 Total: -59.17 kcal Atomic # 8 Polarization: -58.37 SS G_CDS: -2.93 Total: -61.31 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -68.34 4.72 -63.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346422488.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.514 kcal (2) G-P(sol) polarization free energy of solvation -68.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds