Wall clock time and date at job start Wed Apr 1 2020 02:48:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86808 * 119.99904 * 2 1
4 4 H 1.48497 * 109.46918 * 180.02562 * 3 2 1
5 5 H 1.48507 * 109.47081 * 299.99957 * 3 2 1
6 6 H 1.48499 * 109.46892 * 60.00073 * 3 2 1
7 7 C 1.37874 * 120.00403 * 180.02562 * 2 1 3
8 8 H 1.07994 * 120.00238 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99738 * 359.97438 * 7 2 1
10 10 O 1.42898 * 110.64370 * 298.31975 * 9 7 2
11 11 C 1.55160 * 110.71860 * 61.45728 * 9 7 2
12 12 C 1.54903 * 101.58296 * 153.86354 * 11 9 7
13 13 N 1.47429 * 104.83336 * 322.99013 * 12 11 9
14 14 S 1.65599 * 125.65121 * 204.09055 * 13 12 11
15 15 O 1.42105 * 104.27655 * 333.95302 * 14 13 12
16 16 O 1.42101 * 104.27764 * 206.09739 * 14 13 12
17 17 C 1.81395 * 104.44748 * 90.02608 * 14 13 12
18 18 C 1.52999 * 109.46986 * 180.02562 * 17 14 13
19 19 H 1.09002 * 110.24873 * 59.29539 * 18 17 14
20 20 C 1.55188 * 110.28234 * 181.30941 * 18 17 14
21 21 C 1.54120 * 100.71181 * 154.01431 * 20 18 17
22 22 C 1.52401 * 115.83376 * 96.46445 * 21 20 18
23 23 C 1.54037 * 86.64530 * 93.64238 * 22 21 20
24 24 C 1.52396 * 115.95407 * 198.23591 * 21 20 18
25 25 C 1.53077 * 103.84177 * 327.40070 * 21 20 18
26 26 O 1.43603 * 107.17247 * 19.90563 * 25 21 20
27 27 C 1.47022 * 108.69781 * 24.35678 * 13 12 11
28 28 H 0.96998 * 119.99906 * 0.02562 * 1 2 3
29 29 H 0.96693 * 114.00473 * 61.68318 * 10 9 7
30 30 H 1.09004 * 111.00455 * 35.78631 * 11 9 7
31 31 H 1.08998 * 111.04071 * 271.95463 * 11 9 7
32 32 H 1.09000 * 110.37146 * 204.15374 * 12 11 9
33 33 H 1.08998 * 110.36668 * 81.82950 * 12 11 9
34 34 H 1.09003 * 109.47393 * 299.99669 * 17 14 13
35 35 H 1.08994 * 109.47678 * 60.00285 * 17 14 13
36 36 H 1.08999 * 111.15760 * 271.96008 * 20 18 17
37 37 H 1.09008 * 111.15644 * 36.20403 * 20 18 17
38 38 H 1.09007 * 113.68195 * 208.07732 * 22 21 20
39 39 H 1.09002 * 113.68820 * 339.20319 * 22 21 20
40 40 H 1.09002 * 113.56873 * 269.77603 * 23 22 21
41 41 H 1.09001 * 113.57335 * 139.00925 * 23 22 21
42 42 H 1.09000 * 113.68654 * 20.90050 * 24 21 20
43 43 H 1.08995 * 113.68707 * 152.02876 * 24 21 20
44 44 H 1.08994 * 109.90100 * 260.52098 * 25 21 20
45 45 H 1.09005 * 109.90103 * 139.28765 * 25 21 20
46 46 H 1.09005 * 109.88113 * 118.13365 * 27 13 12
47 47 H 1.09009 * 109.88030 * 239.28945 * 27 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.7092 1.3464 -0.0006
5 1 1.8904 2.3965 -1.2126
6 1 1.8904 2.3965 1.2125
7 6 2.0046 -1.1940 -0.0005
8 1 3.0846 -1.1939 -0.0010
9 6 1.2512 -2.4991 -0.0005
10 8 0.4503 -2.6185 1.1769
11 6 0.3757 -2.6275 -1.2751
12 6 0.2711 -4.1655 -1.4270
13 7 1.5925 -4.6758 -1.0183
14 16 2.2559 -6.1198 -1.4844
15 8 1.1347 -6.9425 -1.7766
16 8 3.1523 -6.4496 -0.4322
17 6 3.1710 -5.7287 -3.0010
18 6 3.8370 -6.9979 -3.5363
19 1 3.0851 -7.7582 -3.7476
20 6 4.6531 -6.6780 -4.8170
21 6 5.7061 -7.8025 -4.7740
22 6 5.3954 -9.0359 -5.6135
23 6 6.2214 -8.3718 -6.7313
24 6 6.9504 -7.5841 -5.6264
25 6 5.9341 -8.0337 -3.2781
26 8 4.7958 -7.4956 -2.5875
27 6 2.2210 -3.6933 -0.1232
28 1 -0.4850 0.8400 -0.0004
29 1 -0.2277 -1.9345 1.2625
30 1 0.8729 -2.1827 -2.1371
31 1 -0.6073 -2.1824 -1.1211
32 1 0.0660 -4.4313 -2.4640
33 1 -0.5066 -4.5594 -0.7726
34 1 2.4828 -5.3366 -3.7498
35 1 3.9343 -4.9820 -2.7826
36 1 4.0310 -6.7534 -5.7089
37 1 5.1231 -5.6968 -4.7492
38 1 5.8401 -9.9526 -5.2262
39 1 4.3384 -9.1455 -5.8563
40 1 5.6290 -7.7432 -7.3962
41 1 6.8662 -9.0672 -7.2687
42 1 7.1299 -6.5391 -5.8794
43 1 7.8379 -8.0873 -5.2428
44 1 6.8399 -7.5195 -2.9570
45 1 6.0196 -9.1016 -3.0764
46 1 2.3890 -4.1392 0.8572
47 1 3.1675 -3.3578 -0.5472
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001364014481.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:48:27
Heat of formation + Delta-G solvation = -141.633973 kcal
Electronic energy + Delta-G solvation = -29594.669139 eV
Core-core repulsion = 25484.310233 eV
Total energy + Delta-G solvation = -4110.358906 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.95796 -38.03500 -37.45052 -36.71373 -35.53651 -34.26363 -32.55159 -32.19694
-29.72989 -29.11752 -28.27140 -26.86180 -26.21318 -24.82223 -22.81073 -22.00594
-21.32193 -19.78757 -19.10185 -18.39499 -17.47245 -17.21527 -16.84489 -16.30535
-15.88663 -15.60853 -15.43674 -14.98595 -14.94506 -14.55956 -14.14218 -14.02672
-13.57940 -13.31821 -13.15113 -12.96185 -12.62719 -12.61092 -12.23650 -12.13437
-12.04398 -11.98654 -11.73041 -11.66459 -11.58553 -11.48934 -11.33593 -11.06314
-11.00844 -10.85820 -10.68814 -10.58498 -10.46344 -10.44866 -10.26995 -10.09051
-9.80197 -9.31802 -8.67087 -8.34686 -8.15650 -6.27963 -4.35845 0.53745
3.06520 3.17645 3.27158 3.31151 3.38219 3.86634 3.97862 4.12753
4.24166 4.25614 4.37604 4.39369 4.61398 4.62918 4.78215 4.82166
4.99292 5.03995 5.16439 5.27662 5.30436 5.37489 5.41313 5.42389
5.47914 5.50480 5.56507 5.67646 5.72827 5.81797 5.85842 5.95554
5.96096 6.06062 6.26012 6.51175 6.64551 6.68176 6.82877 6.97302
7.05514 7.34740 7.40316 7.74025 8.05012 8.66756 9.32359 9.43727
10.79384
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.016412 B = 0.002904 C = 0.002653
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1705.612718 B = 9638.905665 C =10550.110784
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.894 5.894
2 C 0.072 3.928
3 Si 0.901 3.099
4 H -0.272 1.272
5 H -0.283 1.283
6 H -0.282 1.282
7 C -0.535 4.535
8 H 0.064 0.936
9 C 0.249 3.751
10 O -0.584 6.584
11 C -0.133 4.133
12 C 0.120 3.880
13 N -1.010 6.010
14 S 2.630 3.370
15 O -0.963 6.963
16 O -0.940 6.940
17 C -0.641 4.641
18 C 0.092 3.908
19 H 0.086 0.914
20 C -0.118 4.118
21 C -0.122 4.122
22 C -0.129 4.129
23 C -0.140 4.140
24 C -0.124 4.124
25 C 0.065 3.935
26 O -0.372 6.372
27 C 0.136 3.864
28 H 0.267 0.733
29 H 0.381 0.619
30 H 0.065 0.935
31 H 0.086 0.914
32 H 0.056 0.944
33 H 0.063 0.937
34 H 0.142 0.858
35 H 0.140 0.860
36 H 0.089 0.911
37 H 0.089 0.911
38 H 0.087 0.913
39 H 0.072 0.928
40 H 0.081 0.919
41 H 0.069 0.931
42 H 0.073 0.927
43 H 0.086 0.914
44 H 0.077 0.923
45 H 0.073 0.927
46 H 0.066 0.934
47 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.104 -12.899 -14.137 21.192
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.131 4.131
3 Si 0.729 3.271
4 H -0.196 1.196
5 H -0.209 1.209
6 H -0.208 1.208
7 C -0.573 4.573
8 H 0.083 0.917
9 C 0.208 3.792
10 O -0.393 6.393
11 C -0.173 4.173
12 C -0.005 4.005
13 N -0.849 5.849
14 S 2.723 3.277
15 O -0.953 6.953
16 O -0.930 6.930
17 C -0.768 4.768
18 C 0.032 3.968
19 H 0.104 0.896
20 C -0.157 4.157
21 C -0.122 4.122
22 C -0.166 4.166
23 C -0.177 4.177
24 C -0.161 4.161
25 C -0.011 4.011
26 O -0.292 6.292
27 C 0.011 3.989
28 H 0.077 0.923
29 H 0.231 0.769
30 H 0.084 0.916
31 H 0.104 0.896
32 H 0.074 0.926
33 H 0.082 0.918
34 H 0.160 0.840
35 H 0.159 0.841
36 H 0.107 0.893
37 H 0.107 0.893
38 H 0.105 0.895
39 H 0.091 0.909
40 H 0.099 0.901
41 H 0.088 0.912
42 H 0.092 0.908
43 H 0.104 0.896
44 H 0.095 0.905
45 H 0.091 0.909
46 H 0.084 0.916
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges 9.262 -14.200 -13.391 21.604
hybrid contribution 0.318 2.016 -0.942 2.248
sum 9.580 -12.184 -14.333 21.111
Atomic orbital electron populations
1.69716 1.05929 1.27460 1.50274 1.24997 0.95018 0.99473 0.93610
0.86389 0.80138 0.82889 0.77678 1.19639 1.20932 1.20785 1.21584
0.93670 0.90300 1.51756 0.91739 1.19481 0.86971 0.90452 0.82309
1.86143 1.51794 1.56429 1.44932 1.23308 1.02681 0.90550 1.00741
1.22120 0.83407 0.97153 0.97844 1.58573 1.27668 1.38274 1.60373
1.04398 0.74378 0.72698 0.76247 1.93553 1.49901 1.65454 1.86406
1.93581 1.67030 1.81670 1.50717 1.30904 1.14975 1.06374 1.24573
1.22568 0.92335 0.92684 0.89169 0.89613 1.22953 0.96307 0.98696
0.97698 1.22544 0.97578 0.97130 0.94962 1.22840 1.01016 0.96464
0.96280 1.22899 0.99023 0.99433 0.96358 1.22707 0.96107 1.01243
0.96054 1.23017 0.89384 0.99028 0.89686 1.88644 1.30012 1.79560
1.30978 1.21823 0.95928 0.88746 0.92390 0.92303 0.76878 0.91636
0.89558 0.92596 0.91838 0.84007 0.84149 0.89284 0.89273 0.89492
0.90890 0.90050 0.91237 0.90832 0.89564 0.90530 0.90853 0.91586
0.91551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -22.71 10.67 55.43 0.59 -22.12 16
2 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16
3 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16
4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16
5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16
6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16
7 C -0.53 -13.65 8.22 -34.44 -0.28 -13.93 16
8 H 0.06 1.63 7.57 -52.49 -0.40 1.23 16
9 C 0.25 5.96 0.85 -89.93 -0.08 5.88 16
10 O -0.58 -14.82 13.07 -35.23 -0.46 -15.28 16
11 C -0.13 -2.85 5.47 -24.58 -0.13 -2.98 16
12 C 0.12 2.27 6.88 -2.53 -0.02 2.25 16
13 N -1.01 -19.44 3.62 -111.41 -0.40 -19.84 16
14 S 2.63 46.25 5.49 -107.50 -0.59 45.66 16
15 O -0.96 -18.65 17.61 -57.54 -1.01 -19.66 16
16 O -0.94 -19.53 17.08 -60.32 -1.03 -20.56 16
17 C -0.64 -8.16 5.92 37.16 0.22 -7.94 16
18 C 0.09 1.10 3.47 -25.57 -0.09 1.01 16
19 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16
20 C -0.12 -1.06 5.78 -24.99 -0.14 -1.20 16
21 C -0.12 -0.99 0.94 -154.53 -0.15 -1.14 16
22 C -0.13 -0.88 7.32 -26.50 -0.19 -1.08 16
23 C -0.14 -0.83 7.96 -25.68 -0.20 -1.03 16
24 C -0.12 -0.81 7.41 -26.50 -0.20 -1.00 16
25 C 0.07 0.67 7.31 37.20 0.27 0.94 16
26 O -0.37 -5.24 10.33 -37.05 -0.38 -5.63 16
27 C 0.14 2.94 6.25 -3.06 -0.02 2.92 16
28 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16
29 H 0.38 9.61 7.46 45.56 0.34 9.95 16
30 H 0.06 1.38 8.04 -51.93 -0.42 0.96 16
31 H 0.09 1.93 7.54 -51.93 -0.39 1.54 16
32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
34 H 0.14 1.43 8.14 -51.92 -0.42 1.01 16
35 H 0.14 1.68 8.14 -51.93 -0.42 1.26 16
36 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16
37 H 0.09 0.78 8.05 -51.92 -0.42 0.36 16
38 H 0.09 0.54 8.03 -51.93 -0.42 0.12 16
39 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16
40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16
41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16
42 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16
43 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16
44 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16
45 H 0.07 0.66 7.87 -51.93 -0.41 0.25 16
46 H 0.07 1.50 8.07 -51.93 -0.42 1.08 16
47 H 0.07 1.33 7.66 -51.92 -0.40 0.93 16
LS Contribution 383.90 15.07 5.79 5.79
Total: -1.00 -31.47 383.90 -10.75 -42.22
By element:
Atomic # 1 Polarization: 17.29 SS G_CDS: -7.12 Total: 10.17 kcal
Atomic # 6 Polarization: -14.49 SS G_CDS: -1.11 Total: -15.59 kcal
Atomic # 7 Polarization: -42.15 SS G_CDS: 0.19 Total: -41.96 kcal
Atomic # 8 Polarization: -58.24 SS G_CDS: -2.89 Total: -61.13 kcal
Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal
Atomic # 16 Polarization: 46.25 SS G_CDS: -0.59 Total: 45.66 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -31.47 -10.75 -42.22 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001364014481.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -99.410 kcal
(2) G-P(sol) polarization free energy of solvation -31.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.879 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.224 kcal
(6) G-S(sol) free energy of system = (1) + (5) -141.634 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds