Wall clock time and date at job start Wed Apr 1 2020 03:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00284 * 2 1 4 4 H 1.48506 * 109.47167 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47384 * 119.99770 * 3 2 1 7 7 C 1.37883 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99857 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.91880 * 62.44345 * 9 7 2 11 11 C 1.55160 * 111.00167 * 298.54009 * 9 7 2 12 12 C 1.54316 * 102.94268 * 206.42765 * 11 9 7 13 13 N 1.47026 * 107.27365 * 22.19228 * 12 11 9 14 14 S 1.65595 * 125.65010 * 180.79414 * 13 12 11 15 15 O 1.42100 * 104.27641 * 206.09668 * 14 13 12 16 16 O 1.42093 * 104.27849 * 333.95380 * 14 13 12 17 17 C 1.81400 * 104.44977 * 90.02716 * 14 13 12 18 18 C 1.53000 * 109.47211 * 180.02562 * 17 14 13 19 19 H 1.09003 * 110.54792 * 305.69681 * 18 17 14 20 20 C 1.55001 * 110.61881 * 182.82210 * 18 17 14 21 21 C 1.54983 * 102.01043 * 204.59266 * 20 18 17 22 22 C 1.54098 * 104.25392 * 20.66443 * 21 20 18 23 23 H 1.09003 * 110.00691 * 242.67202 * 22 21 20 24 24 C 1.52993 * 109.87950 * 121.59023 * 22 21 20 25 25 C 1.53004 * 117.49883 * 249.46200 * 24 22 21 26 26 C 1.53003 * 117.50140 * 180.80090 * 24 22 21 27 27 O 1.43745 * 107.29264 * 2.16376 * 22 21 20 28 28 C 1.47425 * 108.70074 * 1.05989 * 13 12 11 29 29 H 0.96995 * 119.99479 * 359.97438 * 1 2 3 30 30 H 0.96705 * 113.99952 * 297.55453 * 10 9 7 31 31 H 1.08997 * 110.71793 * 88.06095 * 11 9 7 32 32 H 1.09003 * 110.87062 * 324.86438 * 11 9 7 33 33 H 1.09004 * 109.88447 * 262.78098 * 12 11 9 34 34 H 1.08996 * 110.01243 * 141.68527 * 12 11 9 35 35 H 1.09006 * 109.47075 * 300.00002 * 17 14 13 36 36 H 1.08995 * 109.47196 * 59.99964 * 17 14 13 37 37 H 1.08994 * 110.90313 * 322.67043 * 20 18 17 38 38 H 1.08996 * 110.90873 * 86.27145 * 20 18 17 39 39 H 1.09003 * 110.34028 * 262.02252 * 21 20 18 40 40 H 1.08998 * 110.68720 * 139.47580 * 21 20 18 41 41 H 1.09006 * 115.55165 * 35.13088 * 24 22 21 42 42 H 1.08995 * 117.49704 * 359.97438 * 25 24 22 43 43 H 1.09007 * 117.49855 * 145.02207 * 25 24 22 44 44 H 1.09005 * 117.50023 * 214.97540 * 26 24 22 45 45 H 1.08993 * 117.49836 * 0.02562 * 26 24 22 46 46 H 1.09001 * 110.36478 * 94.71036 * 28 13 12 47 47 H 1.08998 * 110.36859 * 217.03414 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4616 -2.6325 -1.1831 11 6 0.3731 -2.6344 1.2727 12 6 0.2578 -4.1628 1.4523 13 7 1.3939 -4.7723 0.7455 14 16 1.7009 -6.3955 0.6311 15 8 3.1073 -6.4738 0.4440 16 8 1.0832 -6.9511 1.7838 17 6 0.8288 -6.9162 -0.8719 18 6 1.0380 -8.4162 -1.0891 19 1 2.1011 -8.6569 -1.0988 20 6 0.3622 -8.8765 -2.4059 21 6 0.1160 -10.3821 -2.1329 22 6 0.1585 -10.5012 -0.5971 23 1 0.9846 -11.1452 -0.2957 24 6 -1.1630 -11.0757 -0.0830 25 6 -2.0812 -10.1395 0.7053 26 6 -1.3167 -11.2506 1.4292 27 8 0.3536 -9.1777 -0.0712 28 6 2.2180 -3.6987 0.1611 29 1 -0.4849 0.8400 0.0004 30 1 -0.2247 -1.9576 -1.2763 31 1 -0.6090 -2.1897 1.1125 32 1 0.8644 -2.1809 2.1336 33 1 -0.6792 -4.5169 1.0224 34 1 0.2997 -4.4182 2.5110 35 1 -0.2361 -6.7101 -0.7640 36 1 1.2203 -6.3668 -1.7279 37 1 -0.5801 -8.3518 -2.5635 38 1 1.0304 -8.7369 -3.2556 39 1 0.9055 -10.9831 -2.5841 40 1 -0.8590 -10.6879 -2.5124 41 1 -1.6343 -11.8190 -0.7261 42 1 -1.7436 -9.1144 0.8580 43 1 -3.1567 -10.2672 0.5811 44 1 -1.8894 -12.1088 1.7810 45 1 -0.4764 -10.9560 2.0578 46 1 3.0358 -3.4394 0.8335 47 1 2.6070 -4.0049 -0.8100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364869786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:23 Heat of formation + Delta-G solvation = -138.109792 kcal Electronic energy + Delta-G solvation = -29777.386320 eV Core-core repulsion = 25667.180234 eV Total energy + Delta-G solvation = -4110.206086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.12201 -38.04094 -36.73822 -36.71992 -35.57642 -34.24801 -32.54745 -32.22613 -31.81524 -29.20515 -28.26518 -26.97440 -24.85188 -22.88986 -22.36922 -21.77756 -21.28065 -20.54794 -19.82568 -18.49990 -17.52695 -16.95945 -16.88642 -16.33236 -15.92281 -15.83761 -15.44573 -14.95630 -14.84592 -14.45279 -14.16930 -13.91174 -13.55655 -13.32038 -12.94826 -12.76115 -12.40295 -12.33769 -12.11643 -11.91733 -11.89035 -11.78586 -11.74233 -11.67246 -11.62507 -11.49227 -11.33710 -11.07247 -10.99878 -10.77183 -10.62560 -10.52148 -10.41187 -10.27342 -10.22724 -10.00039 -9.82134 -9.38780 -8.69301 -8.31022 -8.21913 -6.28128 -4.35956 0.54897 3.04584 3.21977 3.26837 3.30447 3.35538 3.65199 4.03960 4.21955 4.26034 4.38768 4.42564 4.58027 4.64912 4.78538 4.82626 4.91996 4.97954 4.99154 5.12588 5.21810 5.24479 5.42267 5.48718 5.58368 5.59661 5.61883 5.74818 5.81168 5.83300 5.86253 5.94386 6.03460 6.04132 6.22007 6.22262 6.36839 6.62557 6.65657 6.81387 6.97391 7.06273 7.35290 7.39157 7.73896 8.03787 8.66401 9.29344 9.37836 10.79176 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022600 B = 0.002779 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.646200 B =10072.264460 C =10158.918424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.902 3.098 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.064 0.936 9 C 0.249 3.751 10 O -0.585 6.585 11 C -0.132 4.132 12 C 0.122 3.878 13 N -1.007 6.007 14 S 2.628 3.372 15 O -0.961 6.961 16 O -0.947 6.947 17 C -0.631 4.631 18 C 0.085 3.915 19 H 0.084 0.916 20 C -0.139 4.139 21 C -0.149 4.149 22 C 0.104 3.896 23 H 0.076 0.924 24 C -0.165 4.165 25 C -0.165 4.165 26 C -0.176 4.176 27 O -0.360 6.360 28 C 0.136 3.864 29 H 0.268 0.732 30 H 0.381 0.619 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.140 0.860 36 H 0.146 0.854 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.075 0.925 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.435 -18.369 -3.380 18.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.394 6.394 11 C -0.172 4.172 12 C -0.003 4.003 13 N -0.846 5.846 14 S 2.722 3.278 15 O -0.952 6.952 16 O -0.937 6.937 17 C -0.759 4.759 18 C 0.026 3.974 19 H 0.102 0.898 20 C -0.178 4.178 21 C -0.187 4.187 22 C 0.046 3.954 23 H 0.093 0.907 24 C -0.183 4.183 25 C -0.202 4.202 26 C -0.213 4.213 27 O -0.280 6.280 28 C 0.012 3.988 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.101 0.899 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.117 0.883 46 H 0.093 0.907 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.737 -19.296 -2.663 19.670 hybrid contribution -0.407 1.508 -0.737 1.727 sum -3.144 -17.789 -3.400 18.381 Atomic orbital electron populations 1.69709 1.05945 1.27681 1.50076 1.24986 0.95010 0.99474 0.93506 0.86492 0.79545 0.82152 0.78857 1.20062 1.21200 1.20047 1.21444 0.93728 0.90285 1.52046 0.91734 1.19637 0.86980 0.90651 0.81941 1.86076 1.51589 1.57050 1.44693 1.23153 1.02863 0.90200 1.00970 1.21815 0.86919 0.96557 0.95008 1.58520 1.37331 1.21989 1.66722 1.04425 0.74767 0.72213 0.76440 1.93564 1.28503 1.85770 1.87338 1.93566 1.78549 1.77240 1.44332 1.30752 1.17207 1.02560 1.25334 1.22690 0.97186 0.88652 0.88861 0.89804 1.23129 1.02080 0.95364 0.97208 1.23016 1.03349 0.96849 0.95465 1.22220 0.96101 0.84688 0.92390 0.90655 1.22498 0.97479 1.03439 0.94876 1.22931 0.96878 0.97446 1.02973 1.22969 1.03673 1.00859 0.93786 1.89005 1.78135 1.22527 1.38287 1.22131 0.93452 0.86536 0.96683 0.92222 0.76939 0.89731 0.91411 0.93034 0.92462 0.84165 0.83574 0.89745 0.89630 0.90413 0.89941 0.87001 0.87224 0.89223 0.89061 0.88315 0.90697 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.56 10.76 55.43 0.60 -21.97 16 2 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.54 -13.62 8.27 -34.44 -0.28 -13.90 16 8 H 0.06 1.63 7.79 -52.48 -0.41 1.22 16 9 C 0.25 5.78 0.87 -89.62 -0.08 5.70 16 10 O -0.59 -13.79 13.16 -35.23 -0.46 -14.25 16 11 C -0.13 -2.85 5.38 -24.90 -0.13 -2.98 16 12 C 0.12 2.32 6.89 -3.07 -0.02 2.29 16 13 N -1.01 -19.15 3.62 -111.42 -0.40 -19.56 16 14 S 2.63 45.71 5.57 -107.50 -0.60 45.11 16 15 O -0.96 -18.85 17.60 -57.54 -1.01 -19.86 16 16 O -0.95 -18.53 17.37 -57.73 -1.00 -19.53 16 17 C -0.63 -8.42 5.93 37.16 0.22 -8.20 16 18 C 0.09 1.03 3.29 -25.67 -0.08 0.95 16 19 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.14 -1.30 6.60 -24.63 -0.16 -1.46 16 21 C -0.15 -1.20 6.64 -25.11 -0.17 -1.37 16 22 C 0.10 1.06 3.79 -26.16 -0.10 0.96 16 23 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 24 C -0.16 -1.56 5.54 -90.62 -0.50 -2.06 16 25 C -0.17 -1.77 9.88 -26.69 -0.26 -2.04 16 26 C -0.18 -1.76 10.22 -26.69 -0.27 -2.04 16 27 O -0.36 -4.83 8.95 -35.23 -0.32 -5.15 16 28 C 0.14 2.86 6.06 -2.53 -0.02 2.85 16 29 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 30 H 0.38 9.10 7.57 45.56 0.34 9.44 16 31 H 0.08 1.89 7.55 -51.93 -0.39 1.50 16 32 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 33 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.14 1.77 8.14 -51.92 -0.42 1.34 16 36 H 0.15 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.58 7.59 -51.93 -0.39 0.19 16 41 H 0.11 0.84 7.98 -51.93 -0.41 0.43 16 42 H 0.11 1.43 7.07 -51.93 -0.37 1.06 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.56 8.03 -51.93 -0.42 1.15 16 47 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -30.07 388.22 -11.42 -41.49 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -7.09 Total: 12.54 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.96 Total: -19.55 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.19 Total: -41.52 kcal Atomic # 8 Polarization: -56.00 SS G_CDS: -2.79 Total: -58.80 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 45.71 SS G_CDS: -0.60 Total: 45.11 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.07 -11.42 -41.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364869786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.619 kcal (2) G-P(sol) polarization free energy of solvation -30.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds