Wall clock time and date at job start Wed Apr 1 2020 03:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00284 * 2 1 4 4 H 1.48506 * 109.47167 * 239.99916 * 3 2 1 5 5 H 1.48503 * 109.46827 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47384 * 119.99770 * 3 2 1 7 7 C 1.37883 * 119.99909 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99857 * 0.02562 * 7 2 1 10 10 O 1.42896 * 110.91880 * 62.44345 * 9 7 2 11 11 C 1.55160 * 111.00167 * 298.54009 * 9 7 2 12 12 C 1.54316 * 102.94268 * 206.42765 * 11 9 7 13 13 N 1.47026 * 107.27365 * 22.19228 * 12 11 9 14 14 S 1.65595 * 125.65010 * 180.79414 * 13 12 11 15 15 O 1.42100 * 104.27641 * 206.09668 * 14 13 12 16 16 O 1.42093 * 104.27849 * 333.95380 * 14 13 12 17 17 C 1.81400 * 104.44977 * 90.02716 * 14 13 12 18 18 C 1.53000 * 109.47211 * 180.02562 * 17 14 13 19 19 H 1.09003 * 110.54792 * 305.69681 * 18 17 14 20 20 C 1.55001 * 110.61881 * 182.82210 * 18 17 14 21 21 C 1.54983 * 102.01043 * 204.59266 * 20 18 17 22 22 C 1.54098 * 104.25392 * 20.66443 * 21 20 18 23 23 H 1.09003 * 110.00691 * 242.67202 * 22 21 20 24 24 C 1.52993 * 109.87950 * 121.59023 * 22 21 20 25 25 C 1.53004 * 117.49883 * 249.46200 * 24 22 21 26 26 C 1.53003 * 117.50140 * 180.80090 * 24 22 21 27 27 O 1.43745 * 107.29264 * 2.16376 * 22 21 20 28 28 C 1.47425 * 108.70074 * 1.05989 * 13 12 11 29 29 H 0.96995 * 119.99479 * 359.97438 * 1 2 3 30 30 H 0.96705 * 113.99952 * 297.55453 * 10 9 7 31 31 H 1.08997 * 110.71793 * 88.06095 * 11 9 7 32 32 H 1.09003 * 110.87062 * 324.86438 * 11 9 7 33 33 H 1.09004 * 109.88447 * 262.78098 * 12 11 9 34 34 H 1.08996 * 110.01243 * 141.68527 * 12 11 9 35 35 H 1.09006 * 109.47075 * 300.00002 * 17 14 13 36 36 H 1.08995 * 109.47196 * 59.99964 * 17 14 13 37 37 H 1.08994 * 110.90313 * 322.67043 * 20 18 17 38 38 H 1.08996 * 110.90873 * 86.27145 * 20 18 17 39 39 H 1.09003 * 110.34028 * 262.02252 * 21 20 18 40 40 H 1.08998 * 110.68720 * 139.47580 * 21 20 18 41 41 H 1.09006 * 115.55165 * 35.13088 * 24 22 21 42 42 H 1.08995 * 117.49704 * 359.97438 * 25 24 22 43 43 H 1.09007 * 117.49855 * 145.02207 * 25 24 22 44 44 H 1.09005 * 117.50023 * 214.97540 * 26 24 22 45 45 H 1.08993 * 117.49836 * 0.02562 * 26 24 22 46 46 H 1.09001 * 110.36478 * 94.71036 * 28 13 12 47 47 H 1.08998 * 110.36859 * 217.03414 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.4616 -2.6325 -1.1831 11 6 0.3731 -2.6344 1.2727 12 6 0.2578 -4.1628 1.4523 13 7 1.3939 -4.7723 0.7455 14 16 1.7009 -6.3955 0.6311 15 8 3.1073 -6.4738 0.4440 16 8 1.0832 -6.9511 1.7838 17 6 0.8288 -6.9162 -0.8719 18 6 1.0380 -8.4162 -1.0891 19 1 2.1011 -8.6569 -1.0988 20 6 0.3622 -8.8765 -2.4059 21 6 0.1160 -10.3821 -2.1329 22 6 0.1585 -10.5012 -0.5971 23 1 0.9846 -11.1452 -0.2957 24 6 -1.1630 -11.0757 -0.0830 25 6 -2.0812 -10.1395 0.7053 26 6 -1.3167 -11.2506 1.4292 27 8 0.3536 -9.1777 -0.0712 28 6 2.2180 -3.6987 0.1611 29 1 -0.4849 0.8400 0.0004 30 1 -0.2247 -1.9576 -1.2763 31 1 -0.6090 -2.1897 1.1125 32 1 0.8644 -2.1809 2.1336 33 1 -0.6792 -4.5169 1.0224 34 1 0.2997 -4.4182 2.5110 35 1 -0.2361 -6.7101 -0.7640 36 1 1.2203 -6.3668 -1.7279 37 1 -0.5801 -8.3518 -2.5635 38 1 1.0304 -8.7369 -3.2556 39 1 0.9055 -10.9831 -2.5841 40 1 -0.8590 -10.6879 -2.5124 41 1 -1.6343 -11.8190 -0.7261 42 1 -1.7436 -9.1144 0.8580 43 1 -3.1567 -10.2672 0.5811 44 1 -1.8894 -12.1088 1.7810 45 1 -0.4764 -10.9560 2.0578 46 1 3.0358 -3.4394 0.8335 47 1 2.6070 -4.0049 -0.8100 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364869786.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:22 Heat of formation + Delta-G solvation = -159.512518 kcal Electronic energy + Delta-G solvation = -29778.314412 eV Core-core repulsion = 25667.180234 eV Total energy + Delta-G solvation = -4111.134178 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.93756 -39.74252 -38.21714 -37.51511 -37.05511 -35.99531 -34.14834 -33.41291 -32.67706 -30.89888 -29.97465 -27.85661 -26.69545 -23.75603 -23.19287 -23.02896 -22.35141 -21.61066 -21.30252 -19.96778 -19.15867 -18.54484 -17.98520 -17.46005 -17.01399 -16.86427 -16.80952 -16.56273 -16.09779 -15.82544 -15.68026 -15.08666 -14.62670 -14.55264 -14.43712 -14.09282 -13.87193 -13.63194 -13.39620 -13.26594 -13.18962 -13.15844 -13.10734 -12.90545 -12.74614 -12.71111 -12.56420 -12.43553 -12.30618 -12.29427 -12.16139 -11.83470 -11.72618 -11.64353 -11.19779 -11.11853 -10.99432 -10.63547 -10.59406 -10.08715 -9.84108 -8.19482 -6.33420 -0.81700 1.45804 1.47311 1.53691 1.62626 2.42183 2.50152 2.78145 2.89065 3.04139 3.08984 3.36166 3.57100 3.73024 3.75010 3.88283 3.89975 4.03262 4.10486 4.16829 4.22064 4.26393 4.31100 4.39504 4.48821 4.52593 4.58631 4.67494 4.72006 4.82185 4.83990 4.93598 4.95986 5.02951 5.09103 5.19336 5.20433 5.25334 5.27371 5.37069 5.41315 5.53109 5.59893 5.82440 5.85083 6.15336 6.70590 7.36758 7.45303 8.85862 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.022600 B = 0.002779 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.646200 B =10072.264460 C =10158.918424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.036 3.964 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.562 4.562 8 H 0.057 0.943 9 C 0.238 3.762 10 O -0.585 6.585 11 C -0.125 4.125 12 C 0.124 3.876 13 N -1.012 6.012 14 S 2.627 3.373 15 O -0.989 6.989 16 O -0.975 6.975 17 C -0.605 4.605 18 C 0.071 3.929 19 H 0.089 0.911 20 C -0.135 4.135 21 C -0.141 4.141 22 C 0.089 3.911 23 H 0.079 0.921 24 C -0.152 4.152 25 C -0.179 4.179 26 C -0.182 4.182 27 O -0.388 6.388 28 C 0.139 3.861 29 H 0.269 0.731 30 H 0.377 0.623 31 H 0.074 0.926 32 H 0.053 0.947 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.152 0.848 36 H 0.167 0.833 37 H 0.084 0.916 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.140 0.860 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.086 -19.873 -5.151 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.165 4.165 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.600 4.600 8 H 0.075 0.925 9 C 0.197 3.803 10 O -0.393 6.393 11 C -0.165 4.165 12 C -0.001 4.001 13 N -0.849 5.849 14 S 2.726 3.274 15 O -0.980 6.980 16 O -0.965 6.965 17 C -0.737 4.737 18 C 0.012 3.988 19 H 0.107 0.893 20 C -0.173 4.173 21 C -0.179 4.179 22 C 0.032 3.968 23 H 0.097 0.903 24 C -0.170 4.170 25 C -0.216 4.216 26 C -0.219 4.219 27 O -0.309 6.309 28 C 0.014 3.986 29 H 0.079 0.921 30 H 0.226 0.774 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.170 0.830 36 H 0.185 0.815 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.157 0.843 42 H 0.099 0.901 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.365 -20.785 -4.384 21.507 hybrid contribution -0.215 1.912 -0.191 1.934 sum -3.579 -18.873 -4.575 19.746 Atomic orbital electron populations 1.69778 1.06573 1.28234 1.49942 1.25585 0.95808 1.01886 0.93234 0.85646 0.78472 0.79078 0.78579 1.20050 1.20732 1.20063 1.21722 0.93729 0.91777 1.52783 0.92457 1.19739 0.87494 0.90820 0.82260 1.86058 1.51466 1.56765 1.45022 1.22970 1.01720 0.92020 0.99771 1.21776 0.87828 0.94747 0.95752 1.58476 1.37050 1.22199 1.67221 1.04331 0.74358 0.71334 0.77424 1.93522 1.30648 1.85805 1.88026 1.93528 1.78719 1.77208 1.47087 1.30503 1.16838 1.04114 1.22199 1.22940 0.97962 0.87398 0.90482 0.89302 1.23162 1.02181 0.96068 0.95936 1.23028 1.05037 0.96224 0.93568 1.22516 0.96623 0.83495 0.94179 0.90314 1.22664 0.96787 1.02955 0.94616 1.22890 0.97997 0.96212 1.04486 1.22998 1.03206 1.01282 0.94444 1.89001 1.78341 1.24070 1.39466 1.21963 0.93057 0.86503 0.97088 0.92128 0.77384 0.90762 0.92780 0.91141 0.91873 0.83036 0.81548 0.89690 0.87622 0.88419 0.88413 0.84276 0.90085 0.87617 0.87060 0.90455 0.91422 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.71 10.76 21.45 0.23 -45.48 16 2 C 0.04 1.83 5.29 84.66 0.45 2.27 16 3 Si 0.96 40.74 29.54 68.60 2.03 42.76 16 4 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 6 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.56 -28.79 8.27 25.60 0.21 -28.58 16 8 H 0.06 2.94 7.79 -2.91 -0.02 2.91 16 9 C 0.24 11.11 0.87 -10.15 -0.01 11.10 16 10 O -0.59 -27.42 13.16 -148.98 -1.96 -29.39 16 11 C -0.13 -5.47 5.38 31.78 0.17 -5.29 16 12 C 0.12 4.69 6.89 86.73 0.60 5.29 16 13 N -1.01 -38.38 3.62 -506.43 -1.83 -40.22 16 14 S 2.63 90.86 5.57 -56.49 -0.31 90.54 16 15 O -0.99 -38.95 17.60 -127.65 -2.25 -41.19 16 16 O -0.97 -38.67 17.37 -127.47 -2.21 -40.89 16 17 C -0.60 -15.05 5.93 71.98 0.43 -14.63 16 18 C 0.07 1.59 3.29 31.28 0.10 1.70 16 19 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 20 C -0.13 -2.05 6.60 31.96 0.21 -1.84 16 21 C -0.14 -1.77 6.64 31.64 0.21 -1.56 16 22 C 0.09 1.64 3.79 30.96 0.12 1.76 16 23 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 24 C -0.15 -2.55 5.54 -10.79 -0.06 -2.61 16 25 C -0.18 -3.67 9.88 30.62 0.30 -3.36 16 26 C -0.18 -3.49 10.22 30.62 0.31 -3.17 16 27 O -0.39 -10.05 8.95 -148.98 -1.33 -11.38 16 28 C 0.14 5.86 6.06 86.86 0.53 6.39 16 29 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 30 H 0.38 18.06 7.57 -74.05 -0.56 17.50 16 31 H 0.07 3.36 7.55 -2.39 -0.02 3.34 16 32 H 0.05 2.45 8.04 -2.39 -0.02 2.43 16 33 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.15 3.52 8.14 -2.39 -0.02 3.50 16 36 H 0.17 3.52 8.14 -2.39 -0.02 3.50 16 37 H 0.08 1.30 8.06 -2.39 -0.02 1.28 16 38 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.10 0.96 7.59 -2.39 -0.02 0.94 16 41 H 0.14 1.56 7.98 -2.38 -0.02 1.54 16 42 H 0.08 2.14 7.07 -2.39 -0.02 2.12 16 43 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 44 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 45 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.07 2.89 8.03 -2.39 -0.02 2.87 16 47 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -64.96 388.22 -3.67 -68.63 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: 0.40 Total: 39.15 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 3.57 Total: -32.54 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -1.60 Total: -85.69 kcal Atomic # 8 Polarization: -115.09 SS G_CDS: -7.75 Total: -122.85 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Atomic # 16 Polarization: 90.86 SS G_CDS: -0.31 Total: 90.54 kcal Total: -64.96 -3.67 -68.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364869786.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.885 kcal (2) G-P(sol) polarization free energy of solvation -64.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds