Wall clock time and date at job start Wed Apr 1 2020 02:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99630 * 2 1 4 4 H 1.48500 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47416 * 300.00587 * 3 2 1 6 6 H 1.48509 * 109.47028 * 60.00301 * 3 2 1 7 7 C 1.37866 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00447 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91882 * 297.55468 * 9 7 2 11 11 C 1.55165 * 111.00281 * 61.45698 * 9 7 2 12 12 C 1.54327 * 102.94078 * 153.57654 * 11 9 7 13 13 N 1.47022 * 107.27336 * 337.80587 * 12 11 9 14 14 S 1.65597 * 125.64521 * 178.90565 * 13 12 11 15 15 O 1.42110 * 104.27280 * 206.09739 * 14 13 12 16 16 O 1.42100 * 104.27744 * 333.95092 * 14 13 12 17 17 C 1.81393 * 104.45073 * 90.02745 * 14 13 12 18 18 C 1.52993 * 109.47369 * 179.97438 * 17 14 13 19 19 H 1.09004 * 110.29762 * 307.14706 * 18 17 14 20 20 C 1.54546 * 110.33655 * 185.00075 * 18 17 14 21 21 C 1.54721 * 104.07354 * 217.44557 * 20 18 17 22 22 C 1.53550 * 103.75036 * 0.69785 * 21 20 18 23 23 C 1.52817 * 115.46340 * 253.19573 * 22 21 20 24 24 C 1.53953 * 86.78963 * 217.66191 * 23 22 21 25 25 C 1.52808 * 115.48527 * 152.49429 * 22 21 20 26 26 O 1.43349 * 106.13339 * 22.82306 * 22 21 20 27 27 C 1.47425 * 108.70334 * 358.94217 * 13 12 11 28 28 H 0.97003 * 120.00526 * 359.97438 * 1 2 3 29 29 H 0.96702 * 113.99787 * 62.44258 * 10 9 7 30 30 H 1.08993 * 110.71917 * 35.21385 * 11 9 7 31 31 H 1.09002 * 110.71751 * 271.93956 * 11 9 7 32 32 H 1.08997 * 109.87800 * 97.22770 * 12 11 9 33 33 H 1.08998 * 109.87662 * 218.38556 * 12 11 9 34 34 H 1.09002 * 109.47327 * 300.00127 * 17 14 13 35 35 H 1.09005 * 109.47646 * 59.99546 * 17 14 13 36 36 H 1.09011 * 110.50840 * 336.09237 * 20 18 17 37 37 H 1.08999 * 110.51674 * 98.66137 * 20 18 17 38 38 H 1.09004 * 110.56925 * 119.26081 * 21 20 18 39 39 H 1.08997 * 110.57066 * 242.13091 * 21 20 18 40 40 H 1.09001 * 113.66203 * 332.13821 * 23 22 21 41 41 H 1.08999 * 113.66033 * 103.18820 * 23 22 21 42 42 H 1.09004 * 113.58831 * 270.11352 * 24 23 22 43 43 H 1.09008 * 113.58620 * 139.30979 * 24 23 22 44 44 H 1.09010 * 113.65566 * 256.79186 * 25 22 21 45 45 H 1.08991 * 113.66332 * 27.83757 * 25 22 21 46 46 H 1.08997 * 110.36855 * 142.96531 * 27 13 12 47 47 H 1.08999 * 110.36490 * 265.17846 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4618 -2.6325 1.1832 11 6 0.3732 -2.6344 -1.2727 12 6 0.2581 -4.1629 -1.4522 13 7 1.3942 -4.7722 -0.7455 14 16 1.6975 -6.3957 -0.6252 15 8 2.4465 -6.5242 0.5756 16 8 0.4193 -7.0019 -0.7596 17 6 2.7345 -6.7705 -2.0654 18 6 3.0869 -8.2593 -2.0667 19 1 3.5176 -8.5468 -1.1075 20 6 4.0719 -8.5772 -3.2143 21 6 3.6198 -9.9662 -3.7243 22 6 2.4127 -10.3053 -2.8379 23 6 2.6567 -11.3792 -1.7784 24 6 1.2282 -11.8719 -2.0732 25 6 1.3756 -11.2346 -3.4669 26 8 1.9122 -9.0535 -2.3506 27 6 2.2183 -3.6985 -0.1611 28 1 -0.4851 0.8400 0.0004 29 1 -0.2246 -1.9577 1.2763 30 1 0.8672 -2.1814 -2.1322 31 1 -0.6090 -2.1898 -1.1125 32 1 -0.6789 -4.5170 -1.0224 33 1 0.3014 -4.4160 -2.5115 34 1 2.1916 -6.5245 -2.9780 35 1 3.6500 -6.1809 -2.0174 36 1 3.9878 -7.8334 -4.0068 37 1 5.0944 -8.6201 -2.8392 38 1 3.3225 -9.9115 -4.7716 39 1 4.4133 -10.7010 -3.5882 40 1 3.4316 -12.0954 -2.0517 41 1 2.7828 -10.9801 -0.7720 42 1 0.4666 -11.3970 -1.4546 43 1 1.1377 -12.9579 -2.0975 44 1 0.4779 -10.7199 -3.8097 45 1 1.7900 -11.9101 -4.2152 46 1 2.6073 -4.0047 0.8100 47 1 3.0371 -3.4405 -0.8328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364870085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:05 Heat of formation + Delta-G solvation = -138.734099 kcal Electronic energy + Delta-G solvation = -29700.921987 eV Core-core repulsion = 25590.688829 eV Total energy + Delta-G solvation = -4110.233158 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85047 -38.00578 -36.81717 -36.72284 -35.54635 -34.21032 -32.68486 -32.19046 -31.08269 -29.18601 -28.24128 -26.25725 -25.68233 -24.82688 -22.70019 -21.67903 -21.24335 -19.81242 -19.60750 -18.49773 -17.50746 -17.11148 -16.69286 -16.32038 -16.08321 -15.53986 -15.22577 -14.98925 -14.92075 -14.45464 -14.12469 -13.94260 -13.34167 -13.30382 -12.91354 -12.90184 -12.72264 -12.56502 -12.40226 -12.22512 -11.94657 -11.91061 -11.75734 -11.69612 -11.55708 -11.31802 -11.26999 -11.11894 -11.01778 -10.83298 -10.77211 -10.48473 -10.44868 -10.43936 -10.34805 -9.97491 -9.86293 -9.34522 -8.67786 -8.30457 -8.15352 -6.26081 -4.34588 0.50908 3.04362 3.18970 3.25906 3.28375 3.31972 4.00393 4.13852 4.20538 4.26046 4.34667 4.36857 4.52827 4.57438 4.64329 4.78161 4.82244 4.99706 5.02032 5.06008 5.26230 5.33938 5.43088 5.46752 5.48699 5.50664 5.61602 5.66531 5.74278 5.79187 5.81907 5.95679 5.98106 6.02147 6.04304 6.29290 6.43793 6.63204 6.65823 6.82823 6.96916 7.08068 7.36267 7.41847 7.75700 8.06257 8.67980 9.33940 9.45504 10.81171 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027217 B = 0.002651 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.514574 B =10561.137370 C =10873.471001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.902 3.098 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.535 4.535 8 H 0.065 0.935 9 C 0.252 3.748 10 O -0.581 6.581 11 C -0.132 4.132 12 C 0.121 3.879 13 N -1.006 6.006 14 S 2.627 3.373 15 O -0.956 6.956 16 O -0.943 6.943 17 C -0.638 4.638 18 C 0.085 3.915 19 H 0.084 0.916 20 C -0.142 4.142 21 C -0.139 4.139 22 C 0.076 3.924 23 C -0.159 4.159 24 C -0.137 4.137 25 C -0.128 4.128 26 O -0.337 6.337 27 C 0.128 3.872 28 H 0.267 0.733 29 H 0.380 0.620 30 H 0.066 0.934 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.262 -18.606 -9.704 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.210 3.790 10 O -0.389 6.389 11 C -0.172 4.172 12 C -0.004 4.004 13 N -0.845 5.845 14 S 2.720 3.280 15 O -0.947 6.947 16 O -0.934 6.934 17 C -0.765 4.765 18 C 0.026 3.974 19 H 0.102 0.898 20 C -0.180 4.180 21 C -0.177 4.177 22 C 0.036 3.964 23 C -0.197 4.197 24 C -0.175 4.175 25 C -0.165 4.165 26 O -0.256 6.256 27 C 0.003 3.997 28 H 0.077 0.923 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.103 0.897 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.112 0.888 46 H 0.094 0.906 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.988 -19.611 -8.916 22.359 hybrid contribution 0.656 1.724 -0.877 2.042 sum 6.643 -17.887 -9.794 21.448 Atomic orbital electron populations 1.69737 1.05949 1.27466 1.50097 1.24998 0.95008 0.99484 0.93596 0.86385 0.80101 0.82897 0.77663 1.19647 1.20928 1.20819 1.21506 0.93694 0.90255 1.51919 0.91696 1.19590 0.86973 0.90335 0.82079 1.86150 1.51468 1.56920 1.44407 1.23171 1.02986 0.90150 1.00913 1.21825 0.88077 0.96634 0.93854 1.58489 1.36110 1.22470 1.67449 1.04484 0.75318 0.72268 0.75949 1.93571 1.74636 1.85364 1.41089 1.93571 1.37413 1.75384 1.87009 1.30870 1.18173 1.02325 1.25115 1.22591 0.86965 0.88166 0.99679 0.89825 1.22968 0.99399 0.97609 0.98067 1.22780 0.97566 0.96901 1.00409 1.22706 0.94135 0.85186 0.94325 1.23394 0.98146 0.98135 1.00030 1.22864 0.97211 1.00435 0.96959 1.22919 0.99217 0.97012 0.97353 1.89113 1.27088 1.24511 1.84900 1.22193 0.93458 0.86770 0.97260 0.92305 0.77044 0.91539 0.89674 0.91979 0.93489 0.84213 0.83790 0.89955 0.89901 0.90164 0.90102 0.89054 0.90595 0.89388 0.91194 0.90106 0.88789 0.90614 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.97 10.76 55.43 0.60 -22.37 16 2 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 3 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -13.69 8.27 -34.45 -0.28 -13.98 16 8 H 0.06 1.63 7.79 -52.48 -0.41 1.22 16 9 C 0.25 6.07 0.87 -89.62 -0.08 5.99 16 10 O -0.58 -15.08 13.16 -35.23 -0.46 -15.55 16 11 C -0.13 -2.88 5.38 -24.89 -0.13 -3.02 16 12 C 0.12 2.33 6.89 -3.06 -0.02 2.31 16 13 N -1.01 -19.37 3.62 -111.42 -0.40 -19.77 16 14 S 2.63 46.41 5.57 -107.50 -0.60 45.81 16 15 O -0.96 -19.38 17.28 -57.54 -0.99 -20.37 16 16 O -0.94 -19.24 17.39 -57.65 -1.00 -20.24 16 17 C -0.64 -7.94 5.79 37.15 0.21 -7.72 16 18 C 0.09 1.02 3.25 -25.92 -0.08 0.93 16 19 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 20 C -0.14 -1.25 6.65 -25.01 -0.17 -1.41 16 21 C -0.14 -1.11 6.48 -25.54 -0.17 -1.27 16 22 C 0.08 0.78 1.13 -90.54 -0.10 0.68 16 23 C -0.16 -1.43 7.57 -26.33 -0.20 -1.63 16 24 C -0.14 -1.23 8.09 -25.75 -0.21 -1.44 16 25 C -0.13 -1.12 7.61 -26.33 -0.20 -1.32 16 26 O -0.34 -4.63 10.82 -35.23 -0.38 -5.01 16 27 C 0.13 2.69 6.25 -2.53 -0.02 2.68 16 28 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.38 9.79 7.57 45.56 0.34 10.14 16 30 H 0.07 1.42 8.03 -51.93 -0.42 1.00 16 31 H 0.08 1.96 7.55 -51.93 -0.39 1.57 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.14 1.57 8.14 -51.92 -0.42 1.15 16 35 H 0.14 1.43 8.14 -51.92 -0.42 1.01 16 36 H 0.08 0.68 7.87 -51.92 -0.41 0.27 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 39 H 0.08 0.50 7.84 -51.93 -0.41 0.09 16 40 H 0.09 0.61 7.97 -51.93 -0.41 0.20 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 44 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.08 1.67 7.67 -51.93 -0.40 1.27 16 47 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 LS Contribution 385.27 15.07 5.81 5.81 Total: -1.00 -31.96 385.27 -11.13 -43.09 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -7.12 Total: 11.16 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -1.54 Total: -17.47 kcal Atomic # 7 Polarization: -42.34 SS G_CDS: 0.19 Total: -42.14 kcal Atomic # 8 Polarization: -58.32 SS G_CDS: -2.84 Total: -61.17 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 46.41 SS G_CDS: -0.60 Total: 45.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.96 -11.13 -43.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364870085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.645 kcal (2) G-P(sol) polarization free energy of solvation -31.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds