Wall clock time and date at job start Wed Apr 1 2020 02:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99630 * 2 1 4 4 H 1.48500 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47416 * 300.00587 * 3 2 1 6 6 H 1.48509 * 109.47028 * 60.00301 * 3 2 1 7 7 C 1.37866 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00447 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00194 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.91882 * 297.55468 * 9 7 2 11 11 C 1.55165 * 111.00281 * 61.45698 * 9 7 2 12 12 C 1.54327 * 102.94078 * 153.57654 * 11 9 7 13 13 N 1.47022 * 107.27336 * 337.80587 * 12 11 9 14 14 S 1.65597 * 125.64521 * 178.90565 * 13 12 11 15 15 O 1.42110 * 104.27280 * 206.09739 * 14 13 12 16 16 O 1.42100 * 104.27744 * 333.95092 * 14 13 12 17 17 C 1.81393 * 104.45073 * 90.02745 * 14 13 12 18 18 C 1.52993 * 109.47369 * 179.97438 * 17 14 13 19 19 H 1.09004 * 110.29762 * 307.14706 * 18 17 14 20 20 C 1.54546 * 110.33655 * 185.00075 * 18 17 14 21 21 C 1.54721 * 104.07354 * 217.44557 * 20 18 17 22 22 C 1.53550 * 103.75036 * 0.69785 * 21 20 18 23 23 C 1.52817 * 115.46340 * 253.19573 * 22 21 20 24 24 C 1.53953 * 86.78963 * 217.66191 * 23 22 21 25 25 C 1.52808 * 115.48527 * 152.49429 * 22 21 20 26 26 O 1.43349 * 106.13339 * 22.82306 * 22 21 20 27 27 C 1.47425 * 108.70334 * 358.94217 * 13 12 11 28 28 H 0.97003 * 120.00526 * 359.97438 * 1 2 3 29 29 H 0.96702 * 113.99787 * 62.44258 * 10 9 7 30 30 H 1.08993 * 110.71917 * 35.21385 * 11 9 7 31 31 H 1.09002 * 110.71751 * 271.93956 * 11 9 7 32 32 H 1.08997 * 109.87800 * 97.22770 * 12 11 9 33 33 H 1.08998 * 109.87662 * 218.38556 * 12 11 9 34 34 H 1.09002 * 109.47327 * 300.00127 * 17 14 13 35 35 H 1.09005 * 109.47646 * 59.99546 * 17 14 13 36 36 H 1.09011 * 110.50840 * 336.09237 * 20 18 17 37 37 H 1.08999 * 110.51674 * 98.66137 * 20 18 17 38 38 H 1.09004 * 110.56925 * 119.26081 * 21 20 18 39 39 H 1.08997 * 110.57066 * 242.13091 * 21 20 18 40 40 H 1.09001 * 113.66203 * 332.13821 * 23 22 21 41 41 H 1.08999 * 113.66033 * 103.18820 * 23 22 21 42 42 H 1.09004 * 113.58831 * 270.11352 * 24 23 22 43 43 H 1.09008 * 113.58620 * 139.30979 * 24 23 22 44 44 H 1.09010 * 113.65566 * 256.79186 * 25 22 21 45 45 H 1.08991 * 113.66332 * 27.83757 * 25 22 21 46 46 H 1.08997 * 110.36855 * 142.96531 * 27 13 12 47 47 H 1.08999 * 110.36490 * 265.17846 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8902 2.3966 -1.2124 6 1 1.8903 2.3965 1.2126 7 6 2.0045 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 8 0.4618 -2.6325 1.1832 11 6 0.3732 -2.6344 -1.2727 12 6 0.2581 -4.1629 -1.4522 13 7 1.3942 -4.7722 -0.7455 14 16 1.6975 -6.3957 -0.6252 15 8 2.4465 -6.5242 0.5756 16 8 0.4193 -7.0019 -0.7596 17 6 2.7345 -6.7705 -2.0654 18 6 3.0869 -8.2593 -2.0667 19 1 3.5176 -8.5468 -1.1075 20 6 4.0719 -8.5772 -3.2143 21 6 3.6198 -9.9662 -3.7243 22 6 2.4127 -10.3053 -2.8379 23 6 2.6567 -11.3792 -1.7784 24 6 1.2282 -11.8719 -2.0732 25 6 1.3756 -11.2346 -3.4669 26 8 1.9122 -9.0535 -2.3506 27 6 2.2183 -3.6985 -0.1611 28 1 -0.4851 0.8400 0.0004 29 1 -0.2246 -1.9577 1.2763 30 1 0.8672 -2.1814 -2.1322 31 1 -0.6090 -2.1898 -1.1125 32 1 -0.6789 -4.5170 -1.0224 33 1 0.3014 -4.4160 -2.5115 34 1 2.1916 -6.5245 -2.9780 35 1 3.6500 -6.1809 -2.0174 36 1 3.9878 -7.8334 -4.0068 37 1 5.0944 -8.6201 -2.8392 38 1 3.3225 -9.9115 -4.7716 39 1 4.4133 -10.7010 -3.5882 40 1 3.4316 -12.0954 -2.0517 41 1 2.7828 -10.9801 -0.7720 42 1 0.4666 -11.3970 -1.4546 43 1 1.1377 -12.9579 -2.0975 44 1 0.4779 -10.7199 -3.8097 45 1 1.7900 -11.9101 -4.2152 46 1 2.6073 -4.0047 0.8100 47 1 3.0371 -3.4405 -0.8328 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364870085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:04 Heat of formation + Delta-G solvation = -163.105961 kcal Electronic energy + Delta-G solvation = -29701.978830 eV Core-core repulsion = 25590.688829 eV Total energy + Delta-G solvation = -4111.290001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.59207 -39.73239 -38.22383 -37.58752 -37.04084 -36.03108 -34.16994 -33.49752 -31.91916 -30.90132 -29.96489 -26.99379 -26.70247 -26.38476 -23.54939 -23.00989 -22.17612 -21.63404 -20.32700 -19.95717 -19.14634 -18.67109 -17.89663 -17.48989 -16.92369 -16.86659 -16.74695 -16.22807 -16.00219 -15.88937 -15.76937 -15.07085 -14.65767 -14.49120 -14.14424 -14.00026 -13.81846 -13.64677 -13.55193 -13.42281 -13.25005 -13.22612 -13.14447 -13.12406 -13.07491 -12.78204 -12.67904 -12.57469 -12.23295 -12.14156 -11.95341 -11.86318 -11.81346 -11.50728 -11.44271 -11.17139 -11.10449 -10.63206 -10.61020 -10.08791 -9.82448 -8.18426 -6.33874 -0.84695 1.43950 1.48292 1.57808 1.63465 2.42415 2.47696 2.82322 3.04389 3.08738 3.29213 3.52851 3.54828 3.73906 3.75775 3.83191 3.88595 3.96434 4.06495 4.14320 4.24274 4.32684 4.40085 4.41770 4.51731 4.64164 4.68147 4.74396 4.77119 4.81014 4.93479 4.96324 4.99737 5.00928 5.09926 5.14041 5.23461 5.24530 5.26032 5.38693 5.43392 5.51103 5.61167 5.83216 5.89828 6.15503 6.72040 7.36449 7.44536 8.87596 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.027217 B = 0.002651 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.514574 B =10561.137370 C =10873.471001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.031 3.969 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.286 1.286 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.227 3.773 10 O -0.597 6.597 11 C -0.122 4.122 12 C 0.123 3.877 13 N -1.012 6.012 14 S 2.618 3.382 15 O -0.994 6.994 16 O -0.982 6.982 17 C -0.601 4.601 18 C 0.069 3.931 19 H 0.081 0.919 20 C -0.136 4.136 21 C -0.133 4.133 22 C 0.058 3.942 23 C -0.158 4.158 24 C -0.144 4.144 25 C -0.124 4.124 26 O -0.373 6.373 27 C 0.132 3.868 28 H 0.268 0.732 29 H 0.375 0.625 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.162 0.838 35 H 0.179 0.821 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.120 0.880 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.124 0.876 46 H 0.057 0.943 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.806 -19.642 -12.484 24.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.170 4.170 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.212 1.212 7 C -0.593 4.593 8 H 0.083 0.917 9 C 0.187 3.813 10 O -0.405 6.405 11 C -0.162 4.162 12 C -0.002 4.002 13 N -0.850 5.850 14 S 2.718 3.282 15 O -0.985 6.985 16 O -0.973 6.973 17 C -0.733 4.733 18 C 0.010 3.990 19 H 0.099 0.901 20 C -0.175 4.175 21 C -0.170 4.170 22 C 0.019 3.981 23 C -0.195 4.195 24 C -0.182 4.182 25 C -0.161 4.161 26 O -0.293 6.293 27 C 0.008 3.992 28 H 0.078 0.922 29 H 0.223 0.777 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.180 0.820 35 H 0.196 0.804 36 H 0.112 0.888 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.139 0.861 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.142 0.858 46 H 0.075 0.925 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.490 -20.634 -11.646 25.169 hybrid contribution -0.146 1.949 -0.004 1.954 sum 8.344 -18.686 -11.650 23.548 Atomic orbital electron populations 1.69833 1.06913 1.28094 1.50210 1.25688 0.95779 1.02274 0.93295 0.85447 0.79078 0.79225 0.77424 1.19178 1.20340 1.21223 1.21761 0.93857 0.91283 1.52363 0.91735 1.19964 0.87802 0.91400 0.82182 1.86150 1.51609 1.56818 1.45967 1.22965 1.01354 0.91983 0.99907 1.21789 0.87643 0.94717 0.96023 1.58407 1.36168 1.22501 1.67934 1.04542 0.75224 0.71320 0.77155 1.93517 1.74833 1.85433 1.44681 1.93520 1.40253 1.75546 1.87961 1.30558 1.17937 1.03777 1.21068 1.22869 0.87632 0.87207 1.01315 0.90132 1.23014 0.99317 0.98343 0.96850 1.22813 0.96982 0.96960 1.00294 1.23045 0.95523 0.84354 0.95196 1.23463 0.98714 0.98404 0.98913 1.22864 0.96764 1.01510 0.97048 1.22994 0.98508 0.97004 0.97558 1.89091 1.28574 1.26262 1.85385 1.22092 0.93597 0.86165 0.97394 0.92241 0.77651 0.91055 0.91734 0.93569 0.89497 0.82029 0.80355 0.88844 0.87804 0.89123 0.87800 0.86139 0.92454 0.92242 0.89177 0.91740 0.85787 0.92459 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.44 10.76 21.44 0.23 -47.21 16 2 C 0.03 1.55 5.29 84.65 0.45 2.00 16 3 Si 0.96 40.68 29.54 68.60 2.03 42.71 16 4 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 6 H -0.29 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.55 -28.43 8.27 25.60 0.21 -28.22 16 8 H 0.06 3.22 7.79 -2.91 -0.02 3.20 16 9 C 0.23 11.11 0.87 -10.14 -0.01 11.11 16 10 O -0.60 -32.22 13.16 -148.98 -1.96 -34.18 16 11 C -0.12 -5.36 5.38 31.79 0.17 -5.19 16 12 C 0.12 4.69 6.89 86.73 0.60 5.29 16 13 N -1.01 -38.66 3.62 -506.42 -1.83 -40.50 16 14 S 2.62 92.32 5.57 -56.49 -0.31 92.01 16 15 O -0.99 -41.23 17.28 -127.65 -2.21 -43.44 16 16 O -0.98 -41.16 17.39 -127.55 -2.22 -43.38 16 17 C -0.60 -13.20 5.79 71.98 0.42 -12.79 16 18 C 0.07 1.49 3.25 31.12 0.10 1.59 16 19 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 20 C -0.14 -1.81 6.65 31.71 0.21 -1.60 16 21 C -0.13 -1.58 6.48 31.37 0.20 -1.37 16 22 C 0.06 1.06 1.13 -10.74 -0.01 1.05 16 23 C -0.16 -2.56 7.57 30.85 0.23 -2.33 16 24 C -0.14 -2.49 8.09 31.23 0.25 -2.23 16 25 C -0.12 -1.94 7.61 30.85 0.23 -1.71 16 26 O -0.37 -9.86 10.82 -148.98 -1.61 -11.47 16 27 C 0.13 5.58 6.25 86.86 0.54 6.12 16 28 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 29 H 0.37 20.26 7.57 -74.06 -0.56 19.70 16 30 H 0.07 3.00 8.03 -2.39 -0.02 2.98 16 31 H 0.06 3.05 7.55 -2.39 -0.02 3.03 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.16 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.18 2.76 8.14 -2.39 -0.02 2.74 16 36 H 0.09 1.06 7.87 -2.38 -0.02 1.04 16 37 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.09 0.90 8.12 -2.38 -0.02 0.88 16 39 H 0.10 0.76 7.84 -2.39 -0.02 0.74 16 40 H 0.12 1.21 7.97 -2.39 -0.02 1.19 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 43 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 44 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 2.58 7.67 -2.39 -0.02 2.56 16 47 H 0.10 3.44 8.03 -2.39 -0.02 3.42 16 Total: -1.00 -72.37 385.27 -3.88 -76.25 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: 0.40 Total: 37.48 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 3.60 Total: -28.28 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -1.60 Total: -87.70 kcal Atomic # 8 Polarization: -124.47 SS G_CDS: -8.00 Total: -132.46 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 2.03 Total: 42.71 kcal Atomic # 16 Polarization: 92.32 SS G_CDS: -0.31 Total: 92.01 kcal Total: -72.37 -3.88 -76.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364870085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.857 kcal (2) G-P(sol) polarization free energy of solvation -72.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds