Wall clock time and date at job start Wed Apr 1 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47516 * 240.00682 * 3 2 1 5 5 H 1.48504 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47532 * 120.00541 * 3 2 1 7 7 C 1.37881 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99776 * 175.00254 * 7 2 1 9 9 C 1.50696 * 119.99718 * 355.00024 * 7 2 1 10 10 O 1.42896 * 110.64520 * 305.18652 * 9 7 2 11 11 C 1.55156 * 110.71779 * 182.04306 * 9 7 2 12 12 C 1.54910 * 101.58279 * 206.13320 * 11 9 7 13 13 N 1.47422 * 104.82997 * 37.01339 * 12 11 9 14 14 S 1.65599 * 125.64694 * 155.90720 * 13 12 11 15 15 O 1.42104 * 104.27849 * 206.04306 * 14 13 12 16 16 O 1.42099 * 104.28091 * 333.90293 * 14 13 12 17 17 C 1.81398 * 104.45073 * 89.97772 * 14 13 12 18 18 C 1.52999 * 109.47254 * 179.97438 * 17 14 13 19 19 H 1.09000 * 109.82496 * 305.56028 * 18 17 14 20 20 C 1.54464 * 109.82992 * 184.57384 * 18 17 14 21 21 C 1.55468 * 102.35727 * 219.13078 * 20 18 17 22 22 C 1.54083 * 100.79867 * 33.20377 * 21 20 18 23 23 C 1.52891 * 115.01907 * 94.63151 * 22 21 20 24 24 C 1.53941 * 86.80701 * 91.88403 * 23 22 21 25 25 C 1.52869 * 115.04299 * 194.74583 * 22 21 20 26 26 O 1.42645 * 106.36326 * 324.72190 * 22 21 20 27 27 C 1.47316 * 108.73807 * 335.71384 * 13 12 11 28 28 H 0.97001 * 120.00216 * 185.07854 * 1 2 3 29 29 H 0.96699 * 114.00057 * 295.70773 * 10 9 7 30 30 H 1.08993 * 111.00796 * 324.21064 * 11 9 7 31 31 H 1.09007 * 111.00269 * 88.02440 * 11 9 7 32 32 H 1.09004 * 110.36691 * 155.84744 * 12 11 9 33 33 H 1.09000 * 110.37164 * 278.17397 * 12 11 9 34 34 H 1.09005 * 109.47158 * 299.99901 * 17 14 13 35 35 H 1.09002 * 109.47228 * 59.99321 * 17 14 13 36 36 H 1.08991 * 110.82595 * 337.35169 * 20 18 17 37 37 H 1.09005 * 110.82379 * 100.91949 * 20 18 17 38 38 H 1.08994 * 111.15443 * 275.31687 * 21 20 18 39 39 H 1.09000 * 111.18503 * 151.10685 * 21 20 18 40 40 H 1.09000 * 113.65572 * 206.36697 * 23 22 21 41 41 H 1.08998 * 113.65199 * 337.40215 * 23 22 21 42 42 H 1.09005 * 113.58713 * 270.16941 * 24 23 22 43 43 H 1.09005 * 113.58817 * 139.35509 * 24 23 22 44 44 H 1.09005 * 113.65549 * 22.61989 * 25 22 21 45 45 H 1.09004 * 113.65795 * 153.56175 * 25 22 21 46 46 H 1.09000 * 110.06756 * 241.87253 * 27 13 12 47 47 H 1.09004 * 109.85296 * 120.60991 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1957 -0.0820 9 6 1.2553 -2.4967 0.1126 10 8 0.4213 -2.4990 1.2729 11 6 2.2399 -3.6954 0.1419 12 6 1.3563 -4.8375 -0.4191 13 7 0.5281 -4.1983 -1.4578 14 16 -0.1719 -4.9705 -2.7447 15 8 -0.3052 -3.9567 -3.7315 16 8 0.6561 -6.1039 -2.9660 17 6 -1.8015 -5.4821 -2.1338 18 6 -2.5556 -6.2152 -3.2450 19 1 -2.5975 -5.5908 -4.1374 20 6 -3.9866 -6.5536 -2.7721 21 6 -4.2069 -7.9727 -3.3676 22 6 -2.7777 -8.5434 -3.2902 23 6 -2.4778 -9.3684 -2.0384 24 6 -2.9156 -10.6007 -2.8505 25 6 -2.5404 -9.8080 -4.1155 26 8 -1.8951 -7.4527 -3.5472 27 6 0.4219 -2.7596 -1.1594 28 1 -0.4850 -0.8367 0.0744 29 1 0.9079 -2.4521 2.1072 30 1 3.0981 -3.5120 -0.5045 31 1 2.5603 -3.9131 1.1608 32 1 1.9783 -5.6181 -0.8571 33 1 0.7255 -5.2507 0.3679 34 1 -1.6768 -6.1470 -1.2790 35 1 -2.3683 -4.6021 -1.8298 36 1 -4.0395 -6.5775 -1.6837 37 1 -4.7075 -5.8456 -3.1809 38 1 -4.5528 -7.9168 -4.3997 39 1 -4.8963 -8.5542 -2.7554 40 1 -1.4231 -9.3779 -1.7633 41 1 -3.1342 -9.1424 -1.1981 42 1 -3.9807 -10.8187 -2.7722 43 1 -2.2901 -11.4777 -2.6837 44 1 -3.2468 -9.9338 -4.9361 45 1 -1.5035 -9.9403 -4.4249 46 1 -0.6194 -2.4901 -0.9826 47 1 0.8212 -2.1786 -1.9908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364870086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:08 Heat of formation + Delta-G solvation = -143.041925 kcal Electronic energy + Delta-G solvation = -30002.638910 eV Core-core repulsion = 25892.218951 eV Total energy + Delta-G solvation = -4110.419959 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84485 -38.28527 -37.00402 -36.71551 -35.54992 -34.48784 -32.71111 -32.32323 -30.85925 -29.52894 -27.74946 -26.10339 -25.61613 -24.51615 -23.04111 -21.95760 -21.45490 -20.03093 -19.26321 -18.46048 -17.67003 -17.15375 -17.01407 -16.44287 -16.25858 -15.60409 -15.44739 -15.02721 -14.65835 -14.62925 -13.86226 -13.78863 -13.41587 -13.25173 -13.08237 -12.74810 -12.65263 -12.46589 -12.41074 -12.12775 -12.07774 -11.98516 -11.95383 -11.71949 -11.65797 -11.44181 -11.36607 -11.34529 -10.89914 -10.82216 -10.76160 -10.63198 -10.56864 -10.36140 -10.14890 -10.10807 -9.71722 -9.39199 -8.53995 -8.38538 -8.14823 -6.39385 -4.25185 0.54230 3.03694 3.37551 3.41195 3.42528 3.61319 4.01465 4.08178 4.24513 4.27604 4.36157 4.44370 4.47074 4.50219 4.65410 4.75264 4.88207 5.01935 5.09405 5.23211 5.25530 5.29307 5.36922 5.41209 5.47903 5.51851 5.54430 5.56043 5.60607 5.71456 5.74097 5.80325 5.86327 5.94850 5.99571 6.05421 6.26184 6.51738 6.64306 6.72525 6.80908 6.88313 6.95937 7.26705 7.92023 8.26852 8.79540 8.95649 9.58304 10.98249 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.002892 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.621917 B = 9680.795324 C = 9886.790391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.037 3.963 3 Si 1.066 2.934 4 H -0.287 1.287 5 H -0.282 1.282 6 H -0.287 1.287 7 C -0.636 4.636 8 H 0.056 0.944 9 C 0.235 3.765 10 O -0.573 6.573 11 C -0.146 4.146 12 C 0.121 3.879 13 N -1.012 6.012 14 S 2.628 3.372 15 O -0.955 6.955 16 O -0.948 6.948 17 C -0.651 4.651 18 C 0.090 3.910 19 H 0.096 0.904 20 C -0.141 4.141 21 C -0.131 4.131 22 C 0.080 3.920 23 C -0.152 4.152 24 C -0.139 4.139 25 C -0.129 4.129 26 O -0.352 6.352 27 C 0.140 3.860 28 H 0.285 0.715 29 H 0.361 0.639 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.093 0.907 46 H 0.057 0.943 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.547 -17.906 -2.927 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.173 4.173 3 Si 0.894 3.106 4 H -0.213 1.213 5 H -0.207 1.207 6 H -0.214 1.214 7 C -0.674 4.674 8 H 0.075 0.925 9 C 0.194 3.806 10 O -0.378 6.378 11 C -0.185 4.185 12 C -0.004 4.004 13 N -0.851 5.851 14 S 2.721 3.279 15 O -0.945 6.945 16 O -0.938 6.938 17 C -0.778 4.778 18 C 0.030 3.970 19 H 0.114 0.886 20 C -0.179 4.179 21 C -0.169 4.169 22 C 0.040 3.960 23 C -0.190 4.190 24 C -0.176 4.176 25 C -0.166 4.166 26 O -0.271 6.271 27 C 0.016 3.984 28 H 0.098 0.902 29 H 0.207 0.793 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.075 0.925 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.696 -16.506 -4.458 19.182 hybrid contribution -0.057 -1.542 1.226 1.971 sum -8.753 -18.048 -3.231 20.317 Atomic orbital electron populations 1.70674 1.06891 1.32735 1.42156 1.25806 0.96495 1.02494 0.92455 0.83597 0.74991 0.75391 0.76611 1.21339 1.20734 1.21385 1.22266 0.94771 0.91278 1.59060 0.92537 1.19769 0.85827 0.92478 0.82485 1.86354 1.38547 1.96953 1.15984 1.23362 0.98881 0.95943 1.00306 1.21958 0.92841 0.96180 0.89467 1.58747 1.63691 1.18685 1.43990 1.04501 0.76260 0.73696 0.73459 1.93582 1.87064 1.57573 1.56320 1.93551 1.63510 1.52827 1.83916 1.31134 1.25726 1.11030 1.09906 1.22382 0.92152 0.86878 0.95558 0.88642 1.23156 0.95394 0.97111 1.02286 1.22953 0.95713 0.95713 1.02483 1.23209 0.89120 0.86845 0.96806 1.23384 1.02951 0.95661 0.96977 1.22723 1.01406 0.97160 0.96338 1.23072 1.03182 0.93246 0.97105 1.88475 1.38814 1.13352 1.86484 1.22225 1.00373 0.76791 0.99009 0.90185 0.79284 0.90690 0.91244 0.91071 0.92517 0.84757 0.84042 0.89745 0.89266 0.89734 0.89458 0.88831 0.91090 0.90015 0.90645 0.90741 0.88832 0.92483 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.35 55.43 0.74 -24.93 16 2 C 0.04 1.00 5.30 -17.82 -0.09 0.91 16 3 Si 1.07 24.21 29.91 -169.99 -5.08 19.12 16 4 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 7 C -0.64 -16.76 8.09 -34.44 -0.28 -17.03 16 8 H 0.06 1.48 7.75 -52.49 -0.41 1.08 16 9 C 0.24 5.50 0.68 -89.94 -0.06 5.44 16 10 O -0.57 -13.10 11.60 -35.23 -0.41 -13.50 16 11 C -0.15 -2.85 6.21 -24.58 -0.15 -3.01 16 12 C 0.12 2.17 7.07 -2.53 -0.02 2.15 16 13 N -1.01 -19.94 3.63 -111.20 -0.40 -20.34 16 14 S 2.63 48.17 5.53 -107.50 -0.59 47.57 16 15 O -0.95 -20.50 17.61 -57.54 -1.01 -21.51 16 16 O -0.95 -19.07 16.89 -58.95 -1.00 -20.06 16 17 C -0.65 -8.90 5.73 37.16 0.21 -8.68 16 18 C 0.09 1.14 3.52 -25.96 -0.09 1.05 16 19 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 20 C -0.14 -1.31 6.55 -24.65 -0.16 -1.47 16 21 C -0.13 -1.08 6.21 -24.85 -0.15 -1.24 16 22 C 0.08 0.84 1.44 -90.19 -0.13 0.71 16 23 C -0.15 -1.44 7.58 -26.30 -0.20 -1.64 16 24 C -0.14 -1.04 7.90 -25.76 -0.20 -1.24 16 25 C -0.13 -1.16 7.64 -26.31 -0.20 -1.36 16 26 O -0.35 -4.97 10.27 -35.28 -0.36 -5.33 16 27 C 0.14 3.26 5.41 -2.90 -0.02 3.25 16 28 H 0.29 8.19 4.95 -40.82 -0.20 7.99 16 29 H 0.36 7.18 9.09 45.56 0.41 7.59 16 30 H 0.07 1.51 8.01 -51.93 -0.42 1.09 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 1.19 7.67 -51.93 -0.40 0.80 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.13 1.65 8.14 -51.92 -0.42 1.22 16 35 H 0.14 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.56 8.04 -51.93 -0.42 0.15 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.56 8.11 -51.93 -0.42 0.14 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.34 7.05 -51.93 -0.37 0.98 16 47 H 0.08 2.07 7.81 -51.93 -0.41 1.67 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -34.14 383.46 -10.79 -44.92 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -6.89 Total: 10.46 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -1.55 Total: -22.17 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.34 Total: -45.27 kcal Atomic # 8 Polarization: -57.63 SS G_CDS: -2.78 Total: -60.41 kcal Atomic # 14 Polarization: 24.21 SS G_CDS: -5.08 Total: 19.12 kcal Atomic # 16 Polarization: 48.17 SS G_CDS: -0.59 Total: 47.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.14 -10.79 -44.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364870086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.118 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds