Wall clock time and date at job start Wed Apr 1 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86797 * 120.00093 * 2 1 4 4 H 1.48500 * 109.47516 * 240.00682 * 3 2 1 5 5 H 1.48504 * 109.47017 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47532 * 120.00541 * 3 2 1 7 7 C 1.37881 * 120.00127 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99776 * 175.00254 * 7 2 1 9 9 C 1.50696 * 119.99718 * 355.00024 * 7 2 1 10 10 O 1.42896 * 110.64520 * 305.18652 * 9 7 2 11 11 C 1.55156 * 110.71779 * 182.04306 * 9 7 2 12 12 C 1.54910 * 101.58279 * 206.13320 * 11 9 7 13 13 N 1.47422 * 104.82997 * 37.01339 * 12 11 9 14 14 S 1.65599 * 125.64694 * 155.90720 * 13 12 11 15 15 O 1.42104 * 104.27849 * 206.04306 * 14 13 12 16 16 O 1.42099 * 104.28091 * 333.90293 * 14 13 12 17 17 C 1.81398 * 104.45073 * 89.97772 * 14 13 12 18 18 C 1.52999 * 109.47254 * 179.97438 * 17 14 13 19 19 H 1.09000 * 109.82496 * 305.56028 * 18 17 14 20 20 C 1.54464 * 109.82992 * 184.57384 * 18 17 14 21 21 C 1.55468 * 102.35727 * 219.13078 * 20 18 17 22 22 C 1.54083 * 100.79867 * 33.20377 * 21 20 18 23 23 C 1.52891 * 115.01907 * 94.63151 * 22 21 20 24 24 C 1.53941 * 86.80701 * 91.88403 * 23 22 21 25 25 C 1.52869 * 115.04299 * 194.74583 * 22 21 20 26 26 O 1.42645 * 106.36326 * 324.72190 * 22 21 20 27 27 C 1.47316 * 108.73807 * 335.71384 * 13 12 11 28 28 H 0.97001 * 120.00216 * 185.07854 * 1 2 3 29 29 H 0.96699 * 114.00057 * 295.70773 * 10 9 7 30 30 H 1.08993 * 111.00796 * 324.21064 * 11 9 7 31 31 H 1.09007 * 111.00269 * 88.02440 * 11 9 7 32 32 H 1.09004 * 110.36691 * 155.84744 * 12 11 9 33 33 H 1.09000 * 110.37164 * 278.17397 * 12 11 9 34 34 H 1.09005 * 109.47158 * 299.99901 * 17 14 13 35 35 H 1.09002 * 109.47228 * 59.99321 * 17 14 13 36 36 H 1.08991 * 110.82595 * 337.35169 * 20 18 17 37 37 H 1.09005 * 110.82379 * 100.91949 * 20 18 17 38 38 H 1.08994 * 111.15443 * 275.31687 * 21 20 18 39 39 H 1.09000 * 111.18503 * 151.10685 * 21 20 18 40 40 H 1.09000 * 113.65572 * 206.36697 * 23 22 21 41 41 H 1.08998 * 113.65199 * 337.40215 * 23 22 21 42 42 H 1.09005 * 113.58713 * 270.16941 * 24 23 22 43 43 H 1.09005 * 113.58817 * 139.35509 * 24 23 22 44 44 H 1.09005 * 113.65549 * 22.61989 * 25 22 21 45 45 H 1.09004 * 113.65795 * 153.56175 * 25 22 21 46 46 H 1.09000 * 110.06756 * 241.87253 * 27 13 12 47 47 H 1.09004 * 109.85296 * 120.60991 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0814 -1.1957 -0.0820 9 6 1.2553 -2.4967 0.1126 10 8 0.4213 -2.4990 1.2729 11 6 2.2399 -3.6954 0.1419 12 6 1.3563 -4.8375 -0.4191 13 7 0.5281 -4.1983 -1.4578 14 16 -0.1719 -4.9705 -2.7447 15 8 -0.3052 -3.9567 -3.7315 16 8 0.6561 -6.1039 -2.9660 17 6 -1.8015 -5.4821 -2.1338 18 6 -2.5556 -6.2152 -3.2450 19 1 -2.5975 -5.5908 -4.1374 20 6 -3.9866 -6.5536 -2.7721 21 6 -4.2069 -7.9727 -3.3676 22 6 -2.7777 -8.5434 -3.2902 23 6 -2.4778 -9.3684 -2.0384 24 6 -2.9156 -10.6007 -2.8505 25 6 -2.5404 -9.8080 -4.1155 26 8 -1.8951 -7.4527 -3.5472 27 6 0.4219 -2.7596 -1.1594 28 1 -0.4850 -0.8367 0.0744 29 1 0.9079 -2.4521 2.1072 30 1 3.0981 -3.5120 -0.5045 31 1 2.5603 -3.9131 1.1608 32 1 1.9783 -5.6181 -0.8571 33 1 0.7255 -5.2507 0.3679 34 1 -1.6768 -6.1470 -1.2790 35 1 -2.3683 -4.6021 -1.8298 36 1 -4.0395 -6.5775 -1.6837 37 1 -4.7075 -5.8456 -3.1809 38 1 -4.5528 -7.9168 -4.3997 39 1 -4.8963 -8.5542 -2.7554 40 1 -1.4231 -9.3779 -1.7633 41 1 -3.1342 -9.1424 -1.1981 42 1 -3.9807 -10.8187 -2.7722 43 1 -2.2901 -11.4777 -2.6837 44 1 -3.2468 -9.9338 -4.9361 45 1 -1.5035 -9.9403 -4.4249 46 1 -0.6194 -2.4901 -0.9826 47 1 0.8212 -2.1786 -1.9908 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364870086.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:07 Heat of formation + Delta-G solvation = -169.198695 kcal Electronic energy + Delta-G solvation = -30003.773152 eV Core-core repulsion = 25892.218951 eV Total energy + Delta-G solvation = -4111.554202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 345.149 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.62069 -40.00611 -38.28769 -37.79881 -37.11606 -36.22456 -34.33581 -33.59982 -31.75560 -31.16388 -29.51700 -26.81519 -26.60588 -26.33796 -23.72736 -23.41581 -22.45138 -21.84147 -20.10404 -19.89974 -19.50522 -18.66455 -18.14181 -17.58131 -17.25769 -17.09545 -16.78012 -16.21177 -16.10670 -15.66177 -15.59886 -15.00052 -14.76562 -14.60300 -14.34636 -14.13846 -13.87510 -13.76338 -13.69404 -13.45077 -13.34427 -13.26570 -13.20824 -13.01143 -12.85723 -12.76700 -12.61042 -12.42253 -12.24193 -12.14383 -12.04133 -11.95303 -11.91069 -11.61693 -11.59173 -11.22480 -11.19523 -10.55436 -10.54744 -10.07856 -9.97188 -8.51732 -6.38304 -0.89189 1.53705 1.57333 1.62861 1.82143 2.53174 2.58790 2.72604 2.98114 3.20543 3.23003 3.39534 3.56901 3.58383 3.61965 3.74817 3.82472 3.84331 3.89435 4.11913 4.13734 4.22117 4.28684 4.35118 4.44320 4.48244 4.55403 4.67663 4.77355 4.81210 4.83589 4.84596 4.91214 4.95861 4.99878 5.04039 5.11267 5.12586 5.19107 5.25609 5.32933 5.41693 5.47520 5.94227 5.99386 6.18064 6.67777 7.20403 7.54830 8.85423 Molecular weight = 345.15amu Principal moments of inertia in cm(-1) A = 0.023433 B = 0.002892 C = 0.002831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.621917 B = 9680.795324 C = 9886.790391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.010 4.010 3 Si 1.108 2.892 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.646 4.646 8 H 0.051 0.949 9 C 0.224 3.776 10 O -0.578 6.578 11 C -0.141 4.141 12 C 0.119 3.881 13 N -1.017 6.017 14 S 2.621 3.379 15 O -0.998 6.998 16 O -0.972 6.972 17 C -0.618 4.618 18 C 0.075 3.925 19 H 0.091 0.909 20 C -0.136 4.136 21 C -0.123 4.123 22 C 0.060 3.940 23 C -0.158 4.158 24 C -0.125 4.125 25 C -0.135 4.135 26 O -0.384 6.384 27 C 0.152 3.848 28 H 0.276 0.724 29 H 0.373 0.627 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.160 0.840 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.105 0.895 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 -19.649 -1.752 22.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.213 4.213 3 Si 0.931 3.069 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.685 4.685 8 H 0.069 0.931 9 C 0.183 3.817 10 O -0.384 6.384 11 C -0.180 4.180 12 C -0.006 4.006 13 N -0.855 5.855 14 S 2.720 3.280 15 O -0.989 6.989 16 O -0.962 6.962 17 C -0.751 4.751 18 C 0.016 3.984 19 H 0.109 0.891 20 C -0.175 4.175 21 C -0.160 4.160 22 C 0.021 3.979 23 C -0.195 4.195 24 C -0.162 4.162 25 C -0.172 4.172 26 O -0.304 6.304 27 C 0.026 3.974 28 H 0.088 0.912 29 H 0.221 0.779 30 H 0.082 0.918 31 H 0.115 0.885 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.174 0.826 35 H 0.178 0.822 36 H 0.113 0.887 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.108 0.892 45 H 0.092 0.908 46 H 0.066 0.934 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.230 -18.259 -3.279 21.184 hybrid contribution 0.433 -1.112 0.823 1.449 sum -9.797 -19.370 -2.457 21.846 Atomic orbital electron populations 1.70772 1.07764 1.32268 1.44683 1.27042 0.96605 1.05863 0.91799 0.83051 0.74229 0.71956 0.77677 1.20536 1.21227 1.19186 1.22635 0.94822 0.92930 1.58077 0.93068 1.19752 0.86541 0.92798 0.82569 1.86312 1.38748 1.96968 1.16416 1.23300 0.97880 0.94875 1.01920 1.22131 0.93044 0.95659 0.89750 1.58657 1.65244 1.17271 1.44353 1.04479 0.77896 0.72722 0.72888 1.93524 1.88100 1.59008 1.58283 1.93513 1.65749 1.52779 1.84206 1.30860 1.20977 1.12334 1.10948 1.22626 0.94099 0.86662 0.95029 0.89089 1.23205 0.92954 0.98237 1.03076 1.22991 0.94543 0.94931 1.03534 1.23661 0.90133 0.86366 0.97716 1.23395 1.02110 0.96686 0.97340 1.22722 1.02812 0.96349 0.94293 1.23118 1.02563 0.93219 0.98347 1.88465 1.40638 1.14513 1.86782 1.21752 0.99389 0.78479 0.97793 0.91199 0.77920 0.91848 0.88497 0.89914 0.89816 0.82559 0.82198 0.88700 0.87464 0.88914 0.86909 0.90910 0.89683 0.87692 0.90198 0.89240 0.90759 0.93447 0.93876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 13.35 21.45 0.29 -53.66 16 2 C -0.01 -0.53 5.30 84.66 0.45 -0.08 16 3 Si 1.11 48.98 29.91 68.60 2.05 51.03 16 4 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 7 C -0.65 -34.48 8.09 25.60 0.21 -34.27 16 8 H 0.05 2.71 7.75 -2.91 -0.02 2.69 16 9 C 0.22 10.53 0.68 -10.35 -0.01 10.52 16 10 O -0.58 -26.07 11.60 -148.98 -1.73 -27.79 16 11 C -0.14 -5.39 6.21 31.99 0.20 -5.19 16 12 C 0.12 4.11 7.07 86.86 0.61 4.73 16 13 N -1.02 -40.32 3.63 -505.71 -1.83 -42.15 16 14 S 2.62 97.47 5.53 -56.49 -0.31 97.16 16 15 O -1.00 -44.79 17.61 -127.65 -2.25 -47.04 16 16 O -0.97 -39.75 16.89 -126.31 -2.13 -41.88 16 17 C -0.62 -15.95 5.73 71.98 0.41 -15.54 16 18 C 0.08 1.80 3.52 31.09 0.11 1.91 16 19 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 20 C -0.14 -2.08 6.55 31.94 0.21 -1.87 16 21 C -0.12 -1.59 6.21 31.81 0.20 -1.39 16 22 C 0.06 1.14 1.44 -10.51 -0.02 1.13 16 23 C -0.16 -2.65 7.58 30.88 0.23 -2.42 16 24 C -0.12 -1.53 7.90 31.22 0.25 -1.28 16 25 C -0.13 -2.22 7.64 30.87 0.24 -1.99 16 26 O -0.38 -10.54 10.27 -148.93 -1.53 -12.07 16 27 C 0.15 7.24 5.41 86.67 0.47 7.71 16 28 H 0.28 16.23 4.95 -92.71 -0.46 15.77 16 29 H 0.37 14.42 9.09 -74.06 -0.67 13.75 16 30 H 0.06 2.54 8.01 -2.39 -0.02 2.53 16 31 H 0.10 3.13 8.14 -2.38 -0.02 3.12 16 32 H 0.08 2.68 7.67 -2.38 -0.02 2.66 16 33 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.16 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.16 3.61 8.14 -2.39 -0.02 3.59 16 36 H 0.09 1.27 7.85 -2.39 -0.02 1.25 16 37 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 39 H 0.11 0.91 8.04 -2.39 -0.02 0.89 16 40 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.08 1.15 8.11 -2.39 -0.02 1.14 16 42 H 0.10 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 44 H 0.09 1.16 8.11 -2.38 -0.02 1.14 16 45 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.05 2.31 7.05 -2.39 -0.02 2.29 16 47 H 0.04 2.33 7.81 -2.38 -0.02 2.32 16 Total: -1.00 -76.47 383.46 -3.28 -79.75 By element: Atomic # 1 Polarization: 34.08 SS G_CDS: 0.60 Total: 34.68 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 3.56 Total: -38.03 kcal Atomic # 7 Polarization: -94.26 SS G_CDS: -1.55 Total: -95.81 kcal Atomic # 8 Polarization: -121.15 SS G_CDS: -7.64 Total: -128.79 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.03 kcal Atomic # 16 Polarization: 97.47 SS G_CDS: -0.31 Total: 97.16 kcal Total: -76.47 -3.28 -79.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364870086.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.444 kcal (2) G-P(sol) polarization free energy of solvation -76.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds