Wall clock time and date at job start Wed Apr 1 2020 02:47:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86801 * 120.00306 * 2 1
4 4 H 1.48506 * 109.46823 * 239.99853 * 3 2 1
5 5 H 1.48502 * 109.46866 * 359.97438 * 3 2 1
6 6 H 1.48495 * 109.47507 * 119.99351 * 3 2 1
7 7 C 1.37882 * 119.99654 * 179.97438 * 2 1 3
8 8 H 1.08010 * 119.99796 * 172.23872 * 7 2 1
9 9 C 1.50693 * 120.00193 * 352.23210 * 7 2 1
10 10 C 1.53006 * 115.54826 * 84.78858 * 9 7 2
11 11 S 1.81397 * 109.47099 * 65.18985 * 10 9 7
12 12 O 1.42097 * 110.54446 * 62.05424 * 11 10 9
13 13 O 1.42100 * 110.54082 * 285.29932 * 11 10 9
14 14 N 1.65597 * 104.44802 * 173.67747 * 11 10 9
15 15 C 1.47156 * 120.99227 * 269.97431 * 14 11 10
16 16 C 1.53297 * 108.42208 * 129.45364 * 15 14 11
17 17 O 1.42983 * 109.21286 * 52.34490 * 16 15 14
18 18 C 1.42852 * 114.16992 * 297.57713 * 17 16 15
19 19 C 1.53071 * 109.58776 * 302.34806 * 18 17 16
20 20 C 1.53116 * 109.21152 * 296.73008 * 19 18 17
21 21 O 1.42905 * 109.39210 * 302.62268 * 20 19 18
22 22 C 1.42904 * 114.20036 * 61.08753 * 21 20 19
23 23 C 1.53059 * 109.60177 * 182.49753 * 18 17 16
24 24 C 1.47177 * 120.99496 * 90.00106 * 14 11 10
25 25 C 1.53003 * 117.50231 * 230.45529 * 9 7 2
26 26 C 1.52999 * 117.50155 * 299.11519 * 9 7 2
27 27 H 0.97001 * 119.99692 * 5.03951 * 1 2 3
28 28 H 1.08999 * 109.46578 * 305.19212 * 10 9 7
29 29 H 1.09003 * 109.47106 * 185.19173 * 10 9 7
30 30 H 1.09000 * 109.67752 * 249.18958 * 15 14 11
31 31 H 1.08998 * 109.67221 * 9.72580 * 15 14 11
32 32 H 1.08990 * 109.51376 * 172.26600 * 16 15 14
33 33 H 1.09004 * 109.51121 * 292.37428 * 16 15 14
34 34 H 1.09006 * 109.51850 * 56.66297 * 19 18 17
35 35 H 1.08997 * 109.52466 * 176.78724 * 19 18 17
36 36 H 1.09001 * 109.48212 * 62.52552 * 20 19 18
37 37 H 1.08991 * 109.48295 * 182.57260 * 20 19 18
38 38 H 1.09000 * 109.48370 * 178.87613 * 22 21 20
39 39 H 1.08998 * 109.49436 * 58.83405 * 22 21 20
40 40 H 1.09003 * 109.52354 * 183.14009 * 23 18 17
41 41 H 1.09006 * 109.52327 * 303.26559 * 23 18 17
42 42 H 1.08997 * 109.68701 * 110.65513 * 24 14 11
43 43 H 1.09001 * 109.71554 * 350.10984 * 24 14 11
44 44 H 1.08999 * 117.50143 * 215.00662 * 25 9 7
45 45 H 1.09002 * 117.49821 * 0.02562 * 25 9 7
46 46 H 1.09001 * 117.49550 * 359.97438 * 26 9 7
47 47 H 1.09001 * 117.49612 * 144.97298 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6962 -1.2125
5 1 1.2842 2.7464 -0.0006
6 1 3.1029 1.6965 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0771 -1.1985 -0.1258
9 6 1.2613 -2.4931 0.1775
10 6 0.6669 -3.0924 -1.0987
11 16 2.0072 -3.5642 -2.2263
12 8 2.8286 -4.5615 -1.6350
13 8 2.5758 -2.4126 -2.8344
14 7 1.2443 -4.3479 -3.4697
15 6 1.0246 -5.8024 -3.4273
16 6 -0.4516 -6.0785 -3.7350
17 8 -0.8101 -5.4185 -4.9516
18 6 -0.6951 -3.9955 -4.9009
19 6 -1.5675 -3.4502 -3.7676
20 6 -3.0358 -3.7664 -4.0652
21 8 -3.3956 -3.2040 -5.3287
22 6 -2.6449 -3.7146 -6.4323
23 6 -1.1612 -3.3950 -6.2294
24 6 0.7663 -3.6108 -4.6505
25 6 1.7803 -3.4650 1.2392
26 6 0.4825 -2.6897 1.4797
27 1 -0.4850 0.8368 -0.0738
28 1 0.0275 -2.3544 -1.5829
29 1 0.0776 -3.9738 -0.8458
30 1 1.6524 -6.2903 -4.1730
31 1 1.2699 -6.1818 -2.4354
32 1 -0.6062 -7.1519 -3.8439
33 1 -1.0699 -5.7023 -2.9199
34 1 -1.2774 -3.9186 -2.8270
35 1 -1.4352 -2.3708 -3.6930
36 1 -3.1759 -4.8469 -4.0962
37 1 -3.6650 -3.3403 -3.2840
38 1 -2.9937 -3.2508 -7.3550
39 1 -2.7789 -4.7945 -6.4949
40 1 -1.0207 -2.3143 -6.2099
41 1 -0.5804 -3.8231 -7.0465
42 1 1.3698 -3.8765 -5.5184
43 1 0.8375 -2.5385 -4.4682
44 1 1.6982 -4.5313 1.0285
45 1 2.6590 -3.1646 1.8099
46 1 0.5080 -1.8797 2.2085
47 1 -0.4536 -3.2457 1.4271
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001365137414.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 02:47:55
Heat of formation + Delta-G solvation = -129.989181 kcal
Electronic energy + Delta-G solvation = -31371.955651 eV
Core-core repulsion = 27262.101701 eV
Total energy + Delta-G solvation = -4109.853950 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 345.149 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-40.64086 -37.91405 -36.82944 -36.42153 -35.23906 -34.66592 -33.39922 -32.09009
-31.25943 -29.36166 -28.26344 -26.47013 -25.49900 -24.19172 -23.54743 -21.99607
-21.27118 -19.73312 -19.47507 -18.47565 -17.33456 -16.68955 -16.50031 -16.39962
-16.09520 -15.46845 -15.28247 -15.10951 -15.00761 -14.72872 -14.46698 -14.28322
-14.08612 -13.80209 -13.19934 -12.82550 -12.62933 -12.50657 -12.32589 -12.05211
-11.92016 -11.88029 -11.66575 -11.44668 -11.37091 -11.18939 -11.15214 -11.07659
-10.94450 -10.67328 -10.57242 -10.51781 -10.35186 -10.17585 -10.11103 -9.74787
-9.57544 -9.02403 -8.69012 -8.60747 -8.13154 -6.18446 -4.29346 0.90799
3.15178 3.29604 3.31979 3.38270 3.54625 3.82928 4.33617 4.41763
4.51847 4.56853 4.63300 4.75961 4.85779 4.90803 4.99067 5.08348
5.13708 5.15822 5.17653 5.29617 5.31824 5.41116 5.48703 5.55427
5.57410 5.61041 5.65956 5.75083 5.82125 5.87450 5.90734 5.97436
6.07575 6.14695 6.22437 6.31165 6.53810 6.63668 6.66597 6.92747
7.06068 7.14089 7.17883 7.33458 7.75775 8.14855 8.75767 9.42109
10.88995
Molecular weight = 345.15amu
Principal moments of inertia in cm(-1)
A = 0.012528 B = 0.004729 C = 0.004160
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2234.479132 B = 5919.351258 C = 6729.960429
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.873 5.873
2 C 0.084 3.916
3 Si 0.890 3.110
4 H -0.270 1.270
5 H -0.285 1.285
6 H -0.273 1.273
7 C -0.518 4.518
8 H 0.067 0.933
9 C 0.044 3.956
10 C -0.552 4.552
11 S 2.603 3.397
12 O -0.969 6.969
13 O -0.945 6.945
14 N -1.012 6.012
15 C 0.089 3.911
16 C 0.043 3.957
17 O -0.367 6.367
18 C 0.106 3.894
19 C -0.189 4.189
20 C 0.069 3.931
21 O -0.383 6.383
22 C 0.066 3.934
23 C -0.141 4.141
24 C 0.104 3.896
25 C -0.208 4.208
26 C -0.139 4.139
27 H 0.264 0.736
28 H 0.134 0.866
29 H 0.095 0.905
30 H 0.075 0.925
31 H 0.097 0.903
32 H 0.104 0.896
33 H 0.059 0.941
34 H 0.083 0.917
35 H 0.090 0.910
36 H 0.052 0.948
37 H 0.095 0.905
38 H 0.092 0.908
39 H 0.057 0.943
40 H 0.090 0.910
41 H 0.083 0.917
42 H 0.076 0.924
43 H 0.101 0.899
44 H 0.074 0.926
45 H 0.086 0.914
46 H 0.086 0.914
47 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.112 -10.805 -10.190 16.061
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.508 5.508
2 C -0.122 4.122
3 Si 0.716 3.284
4 H -0.195 1.195
5 H -0.210 1.210
6 H -0.198 1.198
7 C -0.555 4.555
8 H 0.085 0.915
9 C 0.041 3.959
10 C -0.685 4.685
11 S 2.701 3.299
12 O -0.959 6.959
13 O -0.935 6.935
14 N -0.848 5.848
15 C -0.037 4.037
16 C -0.036 4.036
17 O -0.286 6.286
18 C 0.065 3.935
19 C -0.227 4.227
20 C -0.008 4.008
21 O -0.302 6.302
22 C -0.011 4.011
23 C -0.179 4.179
24 C -0.022 4.022
25 C -0.246 4.246
26 C -0.179 4.179
27 H 0.074 0.926
28 H 0.153 0.847
29 H 0.114 0.886
30 H 0.094 0.906
31 H 0.115 0.885
32 H 0.122 0.878
33 H 0.077 0.923
34 H 0.102 0.898
35 H 0.109 0.891
36 H 0.071 0.929
37 H 0.113 0.887
38 H 0.110 0.890
39 H 0.075 0.925
40 H 0.109 0.891
41 H 0.102 0.898
42 H 0.094 0.906
43 H 0.119 0.881
44 H 0.092 0.908
45 H 0.105 0.895
46 H 0.105 0.895
47 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -5.514 -10.502 -10.296 15.707
hybrid contribution 0.037 0.796 0.492 0.937
sum -5.477 -9.706 -9.803 14.843
Atomic orbital electron populations
1.69957 1.05998 1.27368 1.47497 1.24939 0.94815 0.99183 0.93238
0.86668 0.79963 0.82435 0.79301 1.19477 1.21047 1.19838 1.20468
0.93629 0.88597 1.52833 0.91480 1.18272 0.99032 0.94343 0.84217
1.30076 1.16455 1.08260 1.13741 1.05437 0.76828 0.73516 0.74080
1.93489 1.64885 1.59596 1.77950 1.93538 1.75057 1.50382 1.74508
1.58318 1.77517 1.15299 1.33687 1.21984 0.96958 0.80947 1.03810
1.23024 0.94567 0.97894 0.88071 1.87913 1.87839 1.17957 1.34873
1.21761 0.94180 0.81684 0.95913 1.22882 0.96508 1.03737 0.99539
1.22477 0.94514 0.97977 0.85794 1.87914 1.60536 1.66428 1.15339
1.22492 0.89982 0.99011 0.89617 1.22170 0.97863 1.01846 0.95989
1.21966 0.93654 0.97689 0.88883 1.23198 0.98753 0.95954 1.06654
1.22549 0.92491 1.01004 1.01829 0.92612 0.84739 0.88632 0.90642
0.88479 0.87847 0.92261 0.89815 0.89118 0.92935 0.88687 0.88964
0.92481 0.89147 0.89801 0.90592 0.88052 0.90764 0.89500 0.89541
0.91558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -23.43 12.98 55.43 0.72 -22.71 16
2 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16
3 Si 0.89 21.09 29.55 -169.99 -5.02 16.07 16
4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16
5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16
6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16
7 C -0.52 -13.93 8.19 -34.44 -0.28 -14.21 16
8 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16
9 C 0.04 1.04 1.32 -155.66 -0.21 0.83 16
10 C -0.55 -11.15 5.29 37.16 0.20 -10.96 16
11 S 2.60 52.10 5.15 -107.50 -0.55 51.54 16
12 O -0.97 -20.90 16.81 -57.54 -0.97 -21.87 16
13 O -0.94 -22.26 16.49 -57.54 -0.95 -23.21 16
14 N -1.01 -15.45 2.86 -113.11 -0.32 -15.77 16
15 C 0.09 1.10 6.50 -3.53 -0.02 1.07 16
16 C 0.04 0.44 6.61 37.31 0.25 0.69 16
17 O -0.37 -4.30 9.22 -35.23 -0.32 -4.63 16
18 C 0.11 1.28 0.68 -90.46 -0.06 1.22 16
19 C -0.19 -2.42 4.45 -26.63 -0.12 -2.54 16
20 C 0.07 0.82 6.71 37.22 0.25 1.07 16
21 O -0.38 -4.88 10.76 -35.23 -0.38 -5.26 16
22 C 0.07 0.67 6.70 37.22 0.25 0.92 16
23 C -0.14 -1.46 5.15 -26.64 -0.14 -1.59 16
24 C 0.10 1.45 5.16 -3.58 -0.02 1.43 16
25 C -0.21 -4.46 9.96 -26.69 -0.27 -4.73 16
26 C -0.14 -3.09 9.49 -26.69 -0.25 -3.34 16
27 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16
28 H 0.13 2.82 8.11 -51.92 -0.42 2.40 16
29 H 0.10 1.61 8.09 -51.92 -0.42 1.18 16
30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
31 H 0.10 1.16 7.22 -51.93 -0.38 0.79 16
32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.06 0.60 6.20 -51.93 -0.32 0.28 16
34 H 0.08 1.08 5.27 -51.93 -0.27 0.80 16
35 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16
36 H 0.05 0.58 7.84 -51.93 -0.41 0.17 16
37 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16
38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16
39 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16
40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16
41 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16
42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16
43 H 0.10 1.51 7.23 -51.93 -0.38 1.14 16
44 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16
45 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16
46 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16
47 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16
LS Contribution 378.38 15.07 5.70 5.70
Total: -1.00 -32.29 378.38 -10.24 -42.53
By element:
Atomic # 1 Polarization: 13.22 SS G_CDS: -7.62 Total: 5.60 kcal
Atomic # 6 Polarization: -27.48 SS G_CDS: -0.52 Total: -28.00 kcal
Atomic # 7 Polarization: -38.88 SS G_CDS: 0.40 Total: -38.49 kcal
Atomic # 8 Polarization: -52.34 SS G_CDS: -2.62 Total: -54.96 kcal
Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal
Atomic # 16 Polarization: 52.10 SS G_CDS: -0.55 Total: 51.54 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -32.29 -10.24 -42.53 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001365137414.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -87.456 kcal
(2) G-P(sol) polarization free energy of solvation -32.295 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.751 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.533 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.989 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds